other hairpins
novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH (12 loci)
sblock9381 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.777 | no | no | 0.35/0.47 | 19/26/0.76 | 0.0 0.0 1.3 | 0.0 0.0 1.0 | 1 1 9 | 0 0 0 | 1 1 3 | 0 0 0 | 8 17 7 | -2 -12 -4 | 5arm_loop 5arm_loop 3arm_loop | 1 1 1 | nd nd nd | 0.40 0.76 0.33 | 3 13 3 | 17 | 3 | 0 | 9 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------AGGUAUG------------------------ | 12 | novel | ||
| seed | ---------------------------------------------GAACGAU------------------ | 2 | novel | ||
| seed | ---------GAGAAAG------------------------------------------------------ | 1 | novel | ||
| seed | -----------------------------------------GUAUGAA---------------------- | 1 | novel | ||
| seed | ------------------UAGACAU--------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| --------------------------------------TAGGTATGAACGATGTTCTCAG---------- | 22 | 1 | 1 | 4 | |
| --------------------------------------TAGGTATGAACGATGTTCTCA----------- | 21 | - | - | 3 | |
| --------------------------------------------TGAACGATGTTCTCAGCTC------- | 19 | - | - | 2 | |
| --------TGAGAAAGATTAGACATGGA------------------------------------------ | 20 | - | - | 1 | |
| ----------------------------------------GGTATGAACGATGTTCTCAG---------- | 20 | - | - | 1 | |
| --------------------------------------TAGGTATGAACGATGTTCTCAGCTC------- | 25 | 1 | - | - | |
| --------------------------------------TAGGTATGAACGATGTTCTCAGC--------- | 23 | - | - | 1 | |
| --------------------------------------TAGGTATGAACGATGTTCTCAGCTCC------ | 26 | - | - | 1 | |
| -----------------TTAGACATGGAAAAAGGCACA-------------------------------- | 21 | 1 | - | - | |
| rat | cttcaatttgagaaagattagacatggaaaaaggcacaTAGGTATGAACGATGTTCTCAGCTCcttggag | ||||
| ********************************************************************** | |||||
| rat | ((((((.(((((((..(((...((((................))))...))).)))))))....)))))) | 0.620 -8.59 | |||
| rat | chromosome:5:114519809:114519878:-1 | intergenic |
novel_cloningOK_nonpairedHIGH (12 loci)
block167235 [novel_cloningOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.330 | no | no | 0.65/0.75 | 18/23/0.75 | 0.0 | 0.0 | 5 | 0 | 2 | 0 | 6 | 8 | 3arm | 1 | nd | 0.32 | 3 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------CGCCCUC-------------------- | 11 | novel | |
| seed | ---------------------------------------------------UCCGCCC---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------------------------------------------------CCGCCCTCTGTGCCCACTCCTT------ | 22 | 5 | - | |
| ----------------------------------------------------CCGCCCTCTGTGCCCACTC--------- | 19 | 1 | 1 | |
| --------------------------------------------------CTCCGCCCTCTGTGCCCACTC--------- | 21 | - | 1 | |
| ----------------------------------------------------CCGCCCTCTGTGCCCACTCCT------- | 21 | - | 1 | |
| ----------------------------------------------------CCGCCCTCTGTGCCCACTCC-------- | 20 | 1 | - | |
| ----------------------------------------------------CCGCCCTCTGTGCCCACT---------- | 18 | - | 1 | |
| ----------------------------------------------------CCGCCCTCTGTGCCCACTCCTTT----- | 23 | 1 | - | |
| rat | gctccgcgcacttagagtggtgccagagcagggagctgtcggctcagtgcctCCGCCCTCTGTGCCCACTCCTTtgggag | |||
| ******************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016438 ENSRNOG00000001706 Kalrn | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016340 ENSRNOG00000001706 Kalrn | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049292 ENSRNOG00000001706 Kalrn | |||
| rat | .((((.((......((((((.(((((((..(((.((((......))))...)))...))))).))))))))...)))))) | 0.560 -30.90 | ||
| rat | chromosome:11:68324016:68324095:1 | Same_strand|Boundary_non-coding|ENSRNOT00000002324|ENSRNOG00000001706 ## Same_strand|Intronic_coding|ENSRNOT00000049292|ENSRNOG00000001706 ## ENSRNOG00000001706|protein_coding|Kalrn|Kalirin (EC 2.7.11.1) (Huntingtin-associated protein-interacting protein) (Protein Duo) (Serine/threonine kinase with Dbl- and pleckstrin homology domain) (PAM COOH-terminal interactor protein 10) (P-CIP10). [Source:UniProtKB/Swiss-Prot;Acc:P97924] |
block466783 [novel_cloningOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.333 | no | no | 0.40/0.44 | 18/20/0.85 | 0.0 | 0.0 | 8 | 0 | 5 | 0 | 13 | 8 | 3arm | 1 | nd | 0.35 | 2 | 13 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------------------------------------CUCUGAC------------------------- | 13 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------GCTCTGACTTTATTGCTCTA------------- | 20 | 6 | 2 | 1 | 1 | 1 | |
| ------------------------------------------------------------------------GCTCTGACTTTATTGCTC--------------- | 18 | - | - | 1 | - | - | |
| ------------------------------------------------------------------------GCTCTGACTTTATTGCTCT-------------- | 19 | - | 1 | - | - | - | |
| rat | gtaataactttagagagcttaaaatattcgttgcctgcttgccacatttgaaaaatatttataatttcacagGCTCTGACTTTATTGCTCTAtcaatgattttgc | ||||||
| ********************************************************************************************************* | |||||||
| rat | ((((.........(((((.((((....(((..(((((...........(((((...........))))))))))..))).))))..)))))..........)))) | 0.760 -15.81 | |||||
| rat | chromosome:15:99830459:99830563:-1 | intergenic |
block625347 [novel_cloningOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.047 | no | no | 0.16/0.20 | 19/20/0.73 | 0.0 | 0.0 | 7 | 0 | 5 | 0 | 12 | 11 | 3arm | 4 | 7 | 0.35 | 3 | 15 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------------AAAGGUU------------------------ | 15 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | |||
| -----------------------------------------------------------TAAAGGTTTTTTTTTTTTCC------------ | 20 | 7 | - | 2 | 1 | 1 | |
| -----------------------------------------------------------TAAAGGTTTTTTTTTTTTC------------- | 19 | 2 | 1 | 1 | - | - | |
| rat | ccattgtggtgacatagaaagaaccatgtacttatattgtctgtccaacagacactgacTAAAGGTTTTTTTTTTTTCCtctttaggtggc | ||||||
| ******************************************************************************************* | |||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>> | ENSRNOT00000003526 ENSRNOG00000002609 RGD1563548_predicted | ||||||
| rat | (((((..((.((...((((((((((...((.(((...((((((.....)))))).))).))..))))))))))...))..))...))))). | 0.440 -21.50 | |||||
| rat | chromosome:17:67083518:67083608:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000003526|ENSRNOG00000002609 ## ENSRNOG00000002609|protein_coding|RGD1563548_predicted| ## {Repeats: dust 67083532 67083543 0 class=dust} |
block997639 [novel_cloningOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.209 | no | no | 0.43/0.50 | 20/23/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 10 6 1 | 0 0 0 | 3 2 1 | 0 0 0 | 10 19 25 | 10 4 -3 | 5arm 5arm 5arm_loop | 1 1 1 | nd nd nd | 0.52 0.35 0.48 | 9 3 4 | 23 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------CCCAACU------------------------------------------------------------------ | 15 | novel | ||
| seed | --------------------CCACAGU--------------------------------------------------------- | 7 | novel | ||
| seed | --------------------------UACUUCU--------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------TCCCAACTCTCCACAGTACTTCT--------------------------------------------------- | 23 | 2 | 2 | 10 | |
| -------------------TCCACAGTACTTCTAGGAAG--------------------------------------------- | 20 | - | 1 | 6 | |
| ----------TCCCAACTCTCCACAGTACT------------------------------------------------------ | 20 | - | - | 1 | |
| -------------------------GTACTTCTAGGAAGGAACTCA-------------------------------------- | 21 | - | - | 1 | |
| rat | acaacccccaTCCCAACTCTCCACAGTACTTCTAGGAAGgaactcaatgctgtttaacccagaagctgtgtgcacgatgcttgt | ||||
| ************************************************************************************ | |||||
| rat | ........((((.........(((((..(((((.((...((((........))))..)).)))))))))).....))))..... | 0.440 -15.74 | |||
| rat | chromosome:1:128264348:128264431:1 | intergenic |
block1060762 [novel_cloningOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.557 | no | no | 0.37/0.43 | 19/22/0.81 | 0.0 | 0.2 | 13 | 0 | 2 | 0 | 15 | 15 | 3arm | 1 | nd | 0.37 | 3 | 16 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------GCAUAAA--------------------------- | 14 | novel | |
| seed | ---------------------------------------------------------------------CAUAAAA-------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------AUAAAAG------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------------------------------------------------TGCATAAAAGGACGACAATC--------------- | 20 | 1 | 10 | |
| -------------------------------------------------------------------TGCATAAAAGGACGACAAT---------------- | 19 | - | 3 | |
| --------------------------------------------------------------------GCATAAAAGGACGACAATCGA------------- | 21 | - | 1 | |
| ---------------------------------------------------------------------CATAAAAGGACGACAATCGAAC----------- | 22 | - | 1 | |
| rat | caaaggagcatttgtcttcttgttagaaggaatgaaattggaaagaagggccctgcctcccccttccTGCATAAAAGGACGACAATCgaacgcttttctttg | |||
| ****************************************************************************************************** | ||||
| rat | (((((((((..(((((.((((.(((..(((((.......((.....((....)).))......)))))...))).)))).)))))......))))..))))) | 0.400 -21.42 | ||
| rat | chromosome:20:5516176:5516277:-1 | intergenic |
block1656488 [novel_cloningOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.863 | no | no | 0.32/0.35 | 19/20/0.92 | 0.0 | 0.0 | 8 | 0 | 3 | 0 | 6 | 9 | 3arm | 1 | nd | 0.40 | 3 | 12 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------ACUGAAA------------------ | 12 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T3S2 | |||
| --------------------------------------------------TACTGAAAACACAAATACCC------ | 20 | 2 | 1 | 8 | |
| --------------------------------------------------TACTGAAAACACAAATACC------- | 19 | - | - | 1 | |
| rat | ttacttttatttttattttccctttattttattatgtgagagcattatggTACTGAAAACACAAATACCCggtgac | ||||
| **************************************************************************** | |||||
| rat | (((((..(((((...(((((....((((.....((((....))))...))))..)))))...)))))...))))). | 0.920 -8.40 | |||
| rat | chromosome:4:87458032:87458107:1 | intergenic |
block2255560 [novel_cloningOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.068 | no | no | 0.65/0.68 | 19/21/0.93 | 0.7 | 0.0 | 14 | 0 | 5 | 0 | 23 | 7 | 3arm | 1 | nd | 0.32 | 2 | 14 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------------------------------GACAGCC----------------------------------- | 8 | novel | ||||
| seed | -----------------------------------------------------------------------------UGACAGC------------------------------------ | 5 | novel | ||||
| seed | -------------------------------------------------------------------------------ACAGCCC---------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | |||
| -----------------------------------------------------------------------------TGACAGCCCTGGTGCCTCTG----------------------- | 20 | 1 | 1 | 3 | 1 | 2 | |
| ----------------------------------------------------------------------------CTGACAGCCCTGGTGCCTCTG----------------------- | 21 | 1 | - | 1 | - | 3 | |
| ------------------------------------------------------------------------------GACAGCCCTGGTGCCTCTG----------------------- | 19 | - | - | 1 | - | - | |
| rat | cctgctagcaggcagcttcctgtgagcccaagtgaacgggccagggctctatgctgctccctcgggcctgggccagCTGACAGCCCTGGTGCCTCTGcgggcctcgtgcctcctggcggg | ||||||
| ************************************************************************************************************************ | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056041 ENSRNOG00000007400 Srebf2 | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000009864 ENSRNOG00000007400 Srebf2 | ||||||
| ................................................................................................................................>> | ENSRNOT00000053670 ENSRNOG00000035547 rno-mir-33 | ||||||
| rat | ((((((((.(((((........(((((((.((.....(((((((((((....((((..(((........))).))))....))))))))).)).))..)))).)))))))).)))))))) | 0.490 -58.20 | |||||
| rat | chromosome:7:120573096:120573215:1 | Same_strand|Intronic_coding|ENSRNOT00000056041|ENSRNOG00000007400 ## ENSRNOG00000007400|protein_coding|Srebf2|sterol regulatory element binding factor 2 [Source:RefSeq_peptide;Acc:NP_001028866] |
block2058024 [novel_cloningOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.022 | no | no | 0.37/0.45 | 19/23/0.90 | 0.2 | 0.0 | 13 | 0 | 2 | 0 | 5 | 18 | 5arm | 1 | nd | 0.35 | 3 | 20 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------CCAGUGA--------------------------------------------------------------------------------------- | 11 | novel | |
| seed | -----------GAGAAUU---------------------------------------------------------------------------------- | 4 | novel | |
| seed | -------CAGUGAG-------------------------------------------------------------------------------------- | 3 | novel | |
| seed | -----UCCAGUG---------------------------------------------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| -----TCCAGTGAGAATTGATCAGGACA------------------------------------------------------------------------ | 23 | - | 10 | |
| ------CCAGTGAGAATTGATCAGGACA------------------------------------------------------------------------ | 22 | - | 3 | |
| ----TTCCAGTGAGAATTGATCAG---------------------------------------------------------------------------- | 20 | - | 2 | |
| ----------TGAGAATTGATCAGGACAT----------------------------------------------------------------------- | 19 | - | 2 | |
| ----------TGAGAATTGATCAGGACATG---------------------------------------------------------------------- | 20 | 1 | 1 | |
| -----TCCAGTGAGAATTGATCAGG--------------------------------------------------------------------------- | 20 | - | 1 | |
| rat | gctctTCCAGTGAGAATTGATCAGGACAtggccacgtgtgttttctaaacagacctacgcatggcttaaaagggttcttgagaagtatccaaagaagaga | |||
| **************************************************************************************************** | ||||
| rat | .((((((...((.(((((..(((((((..(((((.(((((...(((....)))..))))).))))).......)).)))))..))).))))..)))))). | 0.990 -28.50 | ||
| rat | chromosome:6:122585496:122585595:1 | intergenic |
block2551079 [novel_cloningOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.066 | no | no | 0.40/0.42 | 19/20/0.90 | 0.0 0.0 | 0.0 0.0 | 1 6 | 0 0 | 1 2 | 0 0 | 14 8 | 15 21 | 3arm 3arm | 1 1 | nd nd | 0.40 0.35 | 4 3 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------CAGGGAU-------------------- | 8 | novel | |
| seed | ----------------------------------------------------------------------------GGAUUUG----------------- | 1 | novel | |
| seed | -------------------------------------------------------------------ACAACUC-------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ------------------------------------------------------------------------TCAGGGATTTGTAGAGTACA-------- | 20 | 1 | 6 | |
| ------------------------------------------------------------------------TCAGGGATTTGTAGAGTAC--------- | 19 | - | 1 | |
| ------------------------------------------------------------------TACAACTCAGGGATTTGTAG-------------- | 20 | - | 1 | |
| ---------------------------------------------------------------------------GGGATTTGTAGAGTACAACT----- | 20 | - | 1 | |
| rat | acctaaggactgctccacacagagctgagaaggaggattaacgattttattaaactttttgtcccatacaacTCAGGGATTTGTAGAGTACAacttggga | |||
| **************************************************************************************************** | ||||
| rat | .((((((...(((((...(((((.(((((.....((((......(((....)))......)))).......)))))...))))).)))))...)))))). | 0.450 -23.60 | ||
| rat | chromosome:9:105242546:105242645:-1 | intergenic |
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