other hairpins
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap (12 loci)
sblock9434 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.319 | no | no | 0.30/0.48 | 18/25/0.13 | 0.0 2.7 0.0 | 0.0 2.1 0.0 | 29 12 1 | 0 0 0 | 5 3 1 | 0 0 0 | 11 15 5 | -3 -23 -1 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.32 0.37 0.20 | 4 4 3 | 53 | 6 | 0 | -4 |
| reads | miRBase family seed | |||||||
| seed | ------------AGCUAUU--------------------------------------------- | 36 | novel | |||||
| seed | ---------------------------ACAUCCA------------------------------ | 10 | novel | |||||
| seed | -------------------------------CCACAGG-------------------------- | 4 | novel | |||||
| seed | --------CUUUAGC------------------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------AGGAAUU---------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T5S1 | T5S2 | |||
| -----------TAGCTATTTGGTTTCTACA---------------------------------- | 19 | 1 | - | 1 | 2 | 29 | 1 | |
| --------------------------TACATCCACAGGAATTCTTAGTGG-------------- | 24 | - | 1 | - | - | 3 | - | |
| ------------------------------TCCACAGGAATTCTTAGTG--------------- | 19 | - | - | - | - | 4 | - | |
| --------------------------TACATCCACAGGAATTCT-------------------- | 18 | - | - | - | 1 | 2 | - | |
| --------------------------TACATCCACAGGAATTCTT------------------- | 19 | - | - | - | - | 3 | - | |
| -----------TAGCTATTTGGTTTCTACATCCAC----------------------------- | 24 | - | - | - | - | 1 | - | |
| ----------------------------------CAGGAATTCTTAGTGGCAGGAAGCT----- | 25 | - | - | - | - | 1 | - | |
| -----------TAGCTATTTGGTTTCTAC----------------------------------- | 18 | - | - | - | - | 1 | - | |
| -------TCTTTAGCTATTTGGTTTCTACA---------------------------------- | 23 | - | - | - | - | 1 | - | |
| -------TCTTTAGCTATTTGGTTTCTAC----------------------------------- | 22 | - | - | - | - | 1 | - | |
| rat | cagtagatcttTAGCTATTTGGTTTCTACAtccacaggaattcttagtggcaggaagctgtctg | |||||||
| **************************************************************** | ||||||||
| rat | ((((((.((((..((((((.(((((((........)))))))...))))))))))..))).))) | 0.630 -12.90 | ||||||
| rat | chromosome:5:114556974:114557037:-1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_Multihit_nonpairedHIGH_bulgeHIGH (12 loci)
block843800 [novel_lenNOK_cloningHIGH_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.073 | no | no | 0.21/0.38 | 18/24/0.06 | 0.0 0.0 | 0.0 0.0 | 1 73 | 0 0 | 1 5 | 0 0 | 28 29 | -15 6 | 5arm_loop_3arm 3arm | 23 30 | nd nd | 0.42 0.58 | 6 11 | 106 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------------ACAACAG---------------------------------------- | 88 | novel | ||||
| seed | ---------------------------------------UCAAAUA---------------------------------------------- | 4 | novel | ||||
| seed | -----------------------------------AGAGUCA-------------------------------------------------- | 2 | novel | ||||
| seed | ----------------------------------------CAAAUAC--------------------------------------------- | 2 | novel | ||||
| seed | -------------------------------------AGUCAAA------------------------------------------------ | 2 | novel | ||||
| seed | -------------------------------------------AUACAAC------------------------------------------ | 2 | novel | ||||
| seed | -----------------------------------------------AACAGUG-------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------GUCAAAU----------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------GAGUCAA------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------CAGAGUC--------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------CAACAGU--------------------------------------- | 1 | novel | ||||
| seed | -----------------------------GACAACA-------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| --------------------------------------------TACAACAGTGAAATATAAG----------------------------- | 19 | 2 | 9 | 1 | - | 73 | |
| --------------------------------------GTCAAATACAACAGTGAAA----------------------------------- | 19 | - | - | - | - | 4 | |
| ------------------------------------GAGTCAAATACAACAGTGA------------------------------------- | 19 | - | - | - | 1 | 1 | |
| ------------------------------------------AATACAACAGTGAAATATA------------------------------- | 19 | - | - | - | - | 2 | |
| --------------------------------------------TACAACAGTGAAATATAA------------------------------ | 18 | 1 | - | - | - | 1 | |
| ---------------------------------------TCAAATACAACAGTGAAAT---------------------------------- | 19 | - | - | - | - | 2 | |
| ----------------------------TGACAACAGAGTCAAATAC--------------------------------------------- | 19 | - | - | - | - | 1 | |
| ----------------------------------CAGAGTCAAATACAACAGTGAAA----------------------------------- | 23 | - | - | - | - | 1 | |
| ----------------------------------------------CAACAGTGAAATATAAGCCT-------------------------- | 20 | - | - | - | - | 1 | |
| -----------------------------------AGAGTCAAATACAACAGTGA------------------------------------- | 20 | - | - | - | - | 1 | |
| ----------------------------------CAGAGTCAAATACAACAGTGA------------------------------------- | 21 | - | - | - | - | 1 | |
| ---------------------------------------------ACAACAGTGAAATATAAGC---------------------------- | 19 | - | - | - | - | 1 | |
| --------------------------------------------TACAACAGTGAAATATAAGCC--------------------------- | 21 | - | - | - | - | 1 | |
| ---------------------------------ACAGAGTCAAATACAACAGTGAAA----------------------------------- | 24 | - | - | - | 1 | - | |
| -------------------------------------AGTCAAATACAACAGTGAA------------------------------------ | 19 | - | - | - | - | 1 | |
| rat | gctacaacctgtcttctgaactgttgtatgacaacagagtcaaaTACAACAGTGAAATATAAGcctacccctaagatccaaacgttgttgtt | ||||||
| ******************************************************************************************** | |||||||
| rat | ((.(((((......(((..(((((((((((((......))))..)))))))))....................))).......))))).)). | 0.410 -18.17 | |||||
| rat | chromosome:1:49952074:49952165:-1 | intergenic |
block844620 [novel_lenNOK_cloningHIGH_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.044 | no | no | 0.21/0.45 | 18/24/0.11 | 0.0 0.0 2.0 | 0.0 0.0 0.6 | 1 73 7 | 0 0 0 | 1 5 3 | 0 0 0 | 26 25 10 | -15 6 14 | 5arm_loop_3arm 3arm 3arm | 23 30 30 | nd nd nd | 0.47 0.58 0.84 | 6 11 13 | 118 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------ACAACAG------------------------------------ | 88 | novel | ||||
| seed | ---------------------------------------------------GAAAUAU---------------------------- | 6 | novel | ||||
| seed | ----------------------------------------------------------AAGCCUA--------------------- | 5 | novel | ||||
| seed | -------------------------------------UCAAAUA------------------------------------------ | 4 | novel | ||||
| seed | ---------------------------------AGAGUCA---------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------CAAAUAC----------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------AUACAAC-------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------AGUCAAA-------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------AUAAGCC----------------------- | 1 | novel | ||||
| seed | ---------------------------------------------AACAGUG---------------------------------- | 1 | novel | ||||
| seed | ---------------------------GACAACA---------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------CAGAGUC----------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------CAACAGU----------------------------------- | 1 | novel | ||||
| seed | ------------------------------------GUCAAAU------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------GAGUCAA--------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| ------------------------------------------TACAACAGTGAAATATAAG------------------------- | 19 | 2 | 9 | 1 | - | 73 | |
| --------------------------------------------------TGAAATATAAGCCTACTCCTAAGA------------ | 24 | - | - | - | - | 5 | |
| ------------------------------------GTCAAATACAACAGTGAAA------------------------------- | 19 | - | - | - | - | 4 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATC---------- | 19 | 1 | - | - | - | 2 | |
| ----------------------------------------AATACAACAGTGAAATATA--------------------------- | 19 | - | - | - | - | 2 | |
| ------------------------------------------TACAACAGTGAAATATAA-------------------------- | 18 | 1 | - | - | - | 1 | |
| ----------------------------------GAGTCAAATACAACAGTGA--------------------------------- | 19 | - | - | - | 1 | 1 | |
| -------------------------------------TCAAATACAACAGTGAAAT------------------------------ | 19 | - | - | - | - | 2 | |
| --------------------------------CAGAGTCAAATACAACAGTGAAA------------------------------- | 23 | - | - | - | - | 1 | |
| -------------------------------ACAGAGTCAAATACAACAGTGAAA------------------------------- | 24 | - | - | - | 1 | - | |
| -------------------------------------------ACAACAGTGAAATATAAGC------------------------ | 19 | - | - | - | - | 1 | |
| ------------------------------------------TACAACAGTGAAATATAAGCC----------------------- | 21 | - | - | - | - | 1 | |
| --------------------------------------------CAACAGTGAAATATAAGCCT---------------------- | 20 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCC--------- | 20 | - | - | - | 1 | - | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCCA-------- | 21 | 1 | - | - | - | - | |
| --------------------------------------------------TGAAATATAAGCCTACTC------------------ | 18 | 1 | - | - | - | - | |
| --------------------------TGACAACAGAGTCAAATAC----------------------------------------- | 19 | - | - | - | - | 1 | |
| -----------------------------------AGTCAAATACAACAGTGAA-------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------------------------------TATAAGCCTACTCCTAAGA------------ | 19 | - | - | - | - | 1 | |
| ---------------------------------AGAGTCAAATACAACAGTGA--------------------------------- | 20 | - | - | - | - | 1 | |
| --------------------------------CAGAGTCAAATACAACAGTGA--------------------------------- | 21 | - | - | - | - | 1 | |
| rat | tacaacctgtcttctgaactgttgtctgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcctaagatccatacgttgt | ||||||
| ************************************************************************************** | |||||||
| ------------------------------------------------------------------------------------------------ | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | ||||||
| rat | .(((((.(((..(((..((((((((.((((......))))...))))))))....................)))...))).))))) | 0.400 -16.85 | |||||
| rat | chromosome:1:50292934:50293019:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
block845611 [novel_lenNOK_cloningHIGH_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.21/0.38 | 18/24/0.10 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 73 5 | 0 0 0 | 1 5 2 | 0 0 0 | 18 15 2 | -15 6 14 | 5arm_loop_3arm 3arm 3arm | 23 30 30 | nd nd nd | 0.42 0.58 0.71 | 6 11 15 | 113 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------ACAACAG-------------------------- | 88 | novel | ||||
| seed | -------------------------------------------GAAAUAU------------------ | 6 | novel | ||||
| seed | -----------------------------UCAAAUA-------------------------------- | 4 | novel | ||||
| seed | ------------------------------CAAAUAC------------------------------- | 2 | novel | ||||
| seed | ---------------------------------AUACAAC---------------------------- | 2 | novel | ||||
| seed | ---------------------------AGUCAAA---------------------------------- | 2 | novel | ||||
| seed | -------------------------AGAGUCA------------------------------------ | 2 | novel | ||||
| seed | -------------------GACAACA------------------------------------------ | 1 | novel | ||||
| seed | ------------------------------------CAACAGU------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------AUAAGCC------------- | 1 | novel | ||||
| seed | -------------------------------------AACAGUG------------------------ | 1 | novel | ||||
| seed | --------------------------GAGUCAA----------------------------------- | 1 | novel | ||||
| seed | ----------------------------GUCAAAU--------------------------------- | 1 | novel | ||||
| seed | ------------------------CAGAGUC------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| ----------------------------------TACAACAGTGAAATATAAG--------------- | 19 | 2 | 9 | 1 | - | 73 | |
| ------------------------------------------TGAAATATAAGCCTACTCCTAAGA-- | 24 | - | - | - | - | 5 | |
| ----------------------------GTCAAATACAACAGTGAAA--------------------- | 19 | - | - | - | - | 4 | |
| -----------------------------TCAAATACAACAGTGAAAT-------------------- | 19 | - | - | - | - | 2 | |
| --------------------------GAGTCAAATACAACAGTGA----------------------- | 19 | - | - | - | 1 | 1 | |
| --------------------------------AATACAACAGTGAAATATA----------------- | 19 | - | - | - | - | 2 | |
| ----------------------------------TACAACAGTGAAATATAA---------------- | 18 | 1 | - | - | - | 1 | |
| -----------------------------------ACAACAGTGAAATATAAGC-------------- | 19 | - | - | - | - | 1 | |
| -----------------------ACAGAGTCAAATACAACAGTGAAA--------------------- | 24 | - | - | - | 1 | - | |
| ------------------------CAGAGTCAAATACAACAGTGAAA--------------------- | 23 | - | - | - | - | 1 | |
| ---------------------------AGTCAAATACAACAGTGAA---------------------- | 19 | - | - | - | - | 1 | |
| ------------------------------------------TGAAATATAAGCCTACTC-------- | 18 | 1 | - | - | - | - | |
| ----------------------------------TACAACAGTGAAATATAAGCC------------- | 21 | - | - | - | - | 1 | |
| -----------------------------------------------TATAAGCCTACTCCTAAGA-- | 19 | - | - | - | - | 1 | |
| ------------------------CAGAGTCAAATACAACAGTGA----------------------- | 21 | - | - | - | - | 1 | |
| -------------------------AGAGTCAAATACAACAGTGA----------------------- | 20 | - | - | - | - | 1 | |
| ------------------------------------CAACAGTGAAATATAAGCCT------------ | 20 | - | - | - | - | 1 | |
| ------------------TGACAACAGAGTCAAATAC------------------------------- | 19 | - | - | - | - | 1 | |
| rat | gtcttctgaactgttgtatgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcctaagatg | ||||||
| ******************************************************************** | |||||||
| rat | (((((..(((((((((((((((......))))..)))))))))...............))..))))). | 0.710 -15.36 | |||||
| rat | chromosome:1:50784850:50784917:-1 | intergenic |
block846708 [novel_lenNOK_cloningHIGH_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.093 | no | no | 0.21/0.45 | 18/24/0.11 | 0.0 0.0 2.0 | 0.0 0.0 0.6 | 1 73 7 | 0 0 0 | 1 5 3 | 0 0 0 | 34 33 18 | -15 6 14 | 5arm_loop_3arm 3arm 3arm | 23 30 30 | nd nd nd | 0.42 0.58 0.84 | 6 11 13 | 118 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------------------ACAACAG-------------------------------------------- | 88 | novel | ||||
| seed | -----------------------------------------------------------GAAAUAU------------------------------------ | 6 | novel | ||||
| seed | ------------------------------------------------------------------AAGCCUA----------------------------- | 5 | novel | ||||
| seed | ---------------------------------------------UCAAAUA-------------------------------------------------- | 4 | novel | ||||
| seed | -----------------------------------------AGAGUCA------------------------------------------------------ | 2 | novel | ||||
| seed | ----------------------------------------------CAAAUAC------------------------------------------------- | 2 | novel | ||||
| seed | -------------------------------------------------AUACAAC---------------------------------------------- | 2 | novel | ||||
| seed | -------------------------------------------AGUCAAA---------------------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------------------AACAGUG------------------------------------------ | 1 | novel | ||||
| seed | -----------------------------------GACAACA------------------------------------------------------------ | 1 | novel | ||||
| seed | ----------------------------------------CAGAGUC------------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------GUCAAAU--------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------AUAAGCC------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------GAGUCAA----------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------CAACAGU------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| --------------------------------------------------TACAACAGTGAAATATAAG--------------------------------- | 19 | 2 | 9 | 1 | - | 73 | |
| ----------------------------------------------------------TGAAATATAAGCCTACTCCTAAGA-------------------- | 24 | - | - | - | - | 5 | |
| --------------------------------------------GTCAAATACAACAGTGAAA--------------------------------------- | 19 | - | - | - | - | 4 | |
| -----------------------------------------------------------------TAAGCCTACTCCTAAGATC------------------ | 19 | 1 | - | - | - | 2 | |
| ------------------------------------------GAGTCAAATACAACAGTGA----------------------------------------- | 19 | - | - | - | 1 | 1 | |
| ---------------------------------------------TCAAATACAACAGTGAAAT-------------------------------------- | 19 | - | - | - | - | 2 | |
| ------------------------------------------------AATACAACAGTGAAATATA----------------------------------- | 19 | - | - | - | - | 2 | |
| --------------------------------------------------TACAACAGTGAAATATAA---------------------------------- | 18 | 1 | - | - | - | 1 | |
| ---------------------------------------------------------------TATAAGCCTACTCCTAAGA-------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------------------AGTCAAATACAACAGTGAA---------------------------------------- | 19 | - | - | - | - | 1 | |
| ---------------------------------------------------ACAACAGTGAAATATAAGC-------------------------------- | 19 | - | - | - | - | 1 | |
| ----------------------------------------CAGAGTCAAATACAACAGTGA----------------------------------------- | 21 | - | - | - | - | 1 | |
| -----------------------------------------AGAGTCAAATACAACAGTGA----------------------------------------- | 20 | - | - | - | - | 1 | |
| -----------------------------------------------------------------TAAGCCTACTCCTAAGATCC----------------- | 20 | - | - | - | 1 | - | |
| ----------------------------------------CAGAGTCAAATACAACAGTGAAA--------------------------------------- | 23 | - | - | - | - | 1 | |
| -----------------------------------------------------------------TAAGCCTACTCCTAAGATCCA---------------- | 21 | 1 | - | - | - | - | |
| ----------------------------------------------------CAACAGTGAAATATAAGCCT------------------------------ | 20 | - | - | - | - | 1 | |
| ----------------------------------TGACAACAGAGTCAAATAC------------------------------------------------- | 19 | - | - | - | - | 1 | |
| --------------------------------------------------TACAACAGTGAAATATAAGCC------------------------------- | 21 | - | - | - | - | 1 | |
| ----------------------------------------------------------TGAAATATAAGCCTACTC-------------------------- | 18 | 1 | - | - | - | - | |
| ---------------------------------------ACAGAGTCAAATACAACAGTGAAA--------------------------------------- | 24 | - | - | - | 1 | - | |
| rat | acagctgctacaacctgtcttctgaactgttgtatgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcctaagatccatatgttgtttttttgt | ||||||
| ****************************************************************************************************** | |||||||
| rat | ((((.....(((((.(((..(((..(((((((((((((......))))..)))))))))....................)))...))).)))))....)))) | 0.400 -19.55 | |||||
| rat | chromosome:1:51404462:51404563:-1 | intergenic |
block961631 [novel_lenNOK_cloningHIGH_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.015 | no | no | 0.21/0.45 | 18/24/0.11 | 0.0 0.0 2.0 | 0.0 0.0 0.6 | 1 73 7 | 0 0 0 | 1 5 3 | 0 0 0 | 26 25 10 | -15 6 14 | 5arm_loop_3arm 3arm 3arm | 23 30 30 | nd nd nd | 0.42 0.58 0.84 | 6 11 13 | 118 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------ACAACAG------------------------------------ | 88 | novel | ||||
| seed | ---------------------------------------------------GAAAUAU---------------------------- | 6 | novel | ||||
| seed | ----------------------------------------------------------AAGCCUA--------------------- | 5 | novel | ||||
| seed | -------------------------------------UCAAAUA------------------------------------------ | 4 | novel | ||||
| seed | ---------------------------------AGAGUCA---------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------CAAAUAC----------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------AUACAAC-------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------AGUCAAA-------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------AUAAGCC----------------------- | 1 | novel | ||||
| seed | ---------------------------------------------AACAGUG---------------------------------- | 1 | novel | ||||
| seed | ---------------------------GACAACA---------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------CAGAGUC----------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------CAACAGU----------------------------------- | 1 | novel | ||||
| seed | ------------------------------------GUCAAAU------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------GAGUCAA--------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| ------------------------------------------TACAACAGTGAAATATAAG------------------------- | 19 | 2 | 9 | 1 | - | 73 | |
| --------------------------------------------------TGAAATATAAGCCTACTCCTAAGA------------ | 24 | - | - | - | - | 5 | |
| ------------------------------------GTCAAATACAACAGTGAAA------------------------------- | 19 | - | - | - | - | 4 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATC---------- | 19 | 1 | - | - | - | 2 | |
| ----------------------------------------AATACAACAGTGAAATATA--------------------------- | 19 | - | - | - | - | 2 | |
| ------------------------------------------TACAACAGTGAAATATAA-------------------------- | 18 | 1 | - | - | - | 1 | |
| ----------------------------------GAGTCAAATACAACAGTGA--------------------------------- | 19 | - | - | - | 1 | 1 | |
| -------------------------------------TCAAATACAACAGTGAAAT------------------------------ | 19 | - | - | - | - | 2 | |
| --------------------------------CAGAGTCAAATACAACAGTGAAA------------------------------- | 23 | - | - | - | - | 1 | |
| -------------------------------ACAGAGTCAAATACAACAGTGAAA------------------------------- | 24 | - | - | - | 1 | - | |
| -------------------------------------------ACAACAGTGAAATATAAGC------------------------ | 19 | - | - | - | - | 1 | |
| ------------------------------------------TACAACAGTGAAATATAAGCC----------------------- | 21 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCC--------- | 20 | - | - | - | 1 | - | |
| --------------------------------------------CAACAGTGAAATATAAGCCT---------------------- | 20 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCCA-------- | 21 | 1 | - | - | - | - | |
| --------------------------------------------------TGAAATATAAGCCTACTC------------------ | 18 | 1 | - | - | - | - | |
| --------------------------TGACAACAGAGTCAAATAC----------------------------------------- | 19 | - | - | - | - | 1 | |
| -----------------------------------AGTCAAATACAACAGTGAA-------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------------------------------TATAAGCCTACTCCTAAGA------------ | 19 | - | - | - | - | 1 | |
| ---------------------------------AGAGTCAAATACAACAGTGA--------------------------------- | 20 | - | - | - | - | 1 | |
| --------------------------------CAGAGTCAAATACAACAGTGA--------------------------------- | 21 | - | - | - | - | 1 | |
| rat | tacaacctgtcttctgaactgttgtatgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcctaagatccatatgttgt | ||||||
| ************************************************************************************** | |||||||
| rat | .(((((.(((..(((..(((((((((((((......))))..)))))))))....................)))...))).))))) | 0.420 -18.45 | |||||
| rat | chromosome:1:51023773:51023858:1 | intergenic |
block962365 [novel_lenNOK_cloningHIGH_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.21/0.38 | 18/24/0.10 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 73 5 | 0 0 0 | 1 5 2 | 0 0 0 | 18 15 2 | -15 6 14 | 5arm_loop_3arm 3arm 3arm | 23 30 30 | nd nd nd | 0.42 0.58 0.71 | 6 11 15 | 113 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------ACAACAG-------------------------- | 88 | novel | ||||
| seed | -------------------------------------------GAAAUAU------------------ | 6 | novel | ||||
| seed | -----------------------------UCAAAUA-------------------------------- | 4 | novel | ||||
| seed | ------------------------------CAAAUAC------------------------------- | 2 | novel | ||||
| seed | ---------------------------------AUACAAC---------------------------- | 2 | novel | ||||
| seed | ---------------------------AGUCAAA---------------------------------- | 2 | novel | ||||
| seed | -------------------------AGAGUCA------------------------------------ | 2 | novel | ||||
| seed | -------------------GACAACA------------------------------------------ | 1 | novel | ||||
| seed | ------------------------------------CAACAGU------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------AUAAGCC------------- | 1 | novel | ||||
| seed | -------------------------------------AACAGUG------------------------ | 1 | novel | ||||
| seed | --------------------------GAGUCAA----------------------------------- | 1 | novel | ||||
| seed | ----------------------------GUCAAAU--------------------------------- | 1 | novel | ||||
| seed | ------------------------CAGAGUC------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| ----------------------------------TACAACAGTGAAATATAAG--------------- | 19 | 2 | 9 | 1 | - | 73 | |
| ------------------------------------------TGAAATATAAGCCTACTCCTAAGA-- | 24 | - | - | - | - | 5 | |
| ----------------------------GTCAAATACAACAGTGAAA--------------------- | 19 | - | - | - | - | 4 | |
| -----------------------------TCAAATACAACAGTGAAAT-------------------- | 19 | - | - | - | - | 2 | |
| --------------------------GAGTCAAATACAACAGTGA----------------------- | 19 | - | - | - | 1 | 1 | |
| --------------------------------AATACAACAGTGAAATATA----------------- | 19 | - | - | - | - | 2 | |
| ----------------------------------TACAACAGTGAAATATAA---------------- | 18 | 1 | - | - | - | 1 | |
| -----------------------------------ACAACAGTGAAATATAAGC-------------- | 19 | - | - | - | - | 1 | |
| -----------------------ACAGAGTCAAATACAACAGTGAAA--------------------- | 24 | - | - | - | 1 | - | |
| ------------------------CAGAGTCAAATACAACAGTGAAA--------------------- | 23 | - | - | - | - | 1 | |
| ------------------------------------------TGAAATATAAGCCTACTC-------- | 18 | 1 | - | - | - | - | |
| ---------------------------AGTCAAATACAACAGTGAA---------------------- | 19 | - | - | - | - | 1 | |
| ----------------------------------TACAACAGTGAAATATAAGCC------------- | 21 | - | - | - | - | 1 | |
| -----------------------------------------------TATAAGCCTACTCCTAAGA-- | 19 | - | - | - | - | 1 | |
| ------------------------CAGAGTCAAATACAACAGTGA----------------------- | 21 | - | - | - | - | 1 | |
| -------------------------AGAGTCAAATACAACAGTGA----------------------- | 20 | - | - | - | - | 1 | |
| ------------------------------------CAACAGTGAAATATAAGCCT------------ | 20 | - | - | - | - | 1 | |
| ------------------TGACAACAGAGTCAAATAC------------------------------- | 19 | - | - | - | - | 1 | |
| rat | gtcttctgaactgttgtatgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcctaagatg | ||||||
| ******************************************************************** | |||||||
| rat | (((((..(((((((((((((((......))))..)))))))))...............))..))))). | 0.710 -15.36 | |||||
| rat | chromosome:1:51422367:51422434:1 | intergenic |
block963253 [novel_lenNOK_cloningHIGH_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.015 | no | no | 0.21/0.45 | 18/24/0.11 | 0.0 0.0 2.0 | 0.0 0.0 0.6 | 1 73 7 | 0 0 0 | 1 5 3 | 0 0 0 | 26 25 10 | -15 6 14 | 5arm_loop_3arm 3arm 3arm | 23 30 30 | nd nd nd | 0.42 0.58 0.84 | 6 11 13 | 118 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------ACAACAG------------------------------------ | 88 | novel | ||||
| seed | ---------------------------------------------------GAAAUAU---------------------------- | 6 | novel | ||||
| seed | ----------------------------------------------------------AAGCCUA--------------------- | 5 | novel | ||||
| seed | -------------------------------------UCAAAUA------------------------------------------ | 4 | novel | ||||
| seed | ---------------------------------AGAGUCA---------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------CAAAUAC----------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------AUACAAC-------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------AGUCAAA-------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------AUAAGCC----------------------- | 1 | novel | ||||
| seed | ---------------------------------------------AACAGUG---------------------------------- | 1 | novel | ||||
| seed | ---------------------------GACAACA---------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------CAGAGUC----------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------CAACAGU----------------------------------- | 1 | novel | ||||
| seed | ------------------------------------GUCAAAU------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------GAGUCAA--------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| ------------------------------------------TACAACAGTGAAATATAAG------------------------- | 19 | 2 | 9 | 1 | - | 73 | |
| --------------------------------------------------TGAAATATAAGCCTACTCCTAAGA------------ | 24 | - | - | - | - | 5 | |
| ------------------------------------GTCAAATACAACAGTGAAA------------------------------- | 19 | - | - | - | - | 4 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATC---------- | 19 | 1 | - | - | - | 2 | |
| ----------------------------------------AATACAACAGTGAAATATA--------------------------- | 19 | - | - | - | - | 2 | |
| ------------------------------------------TACAACAGTGAAATATAA-------------------------- | 18 | 1 | - | - | - | 1 | |
| ----------------------------------GAGTCAAATACAACAGTGA--------------------------------- | 19 | - | - | - | 1 | 1 | |
| -------------------------------------TCAAATACAACAGTGAAAT------------------------------ | 19 | - | - | - | - | 2 | |
| --------------------------------CAGAGTCAAATACAACAGTGAAA------------------------------- | 23 | - | - | - | - | 1 | |
| -------------------------------ACAGAGTCAAATACAACAGTGAAA------------------------------- | 24 | - | - | - | 1 | - | |
| -------------------------------------------ACAACAGTGAAATATAAGC------------------------ | 19 | - | - | - | - | 1 | |
| ------------------------------------------TACAACAGTGAAATATAAGCC----------------------- | 21 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCC--------- | 20 | - | - | - | 1 | - | |
| --------------------------------------------CAACAGTGAAATATAAGCCT---------------------- | 20 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCCA-------- | 21 | 1 | - | - | - | - | |
| --------------------------------------------------TGAAATATAAGCCTACTC------------------ | 18 | 1 | - | - | - | - | |
| --------------------------TGACAACAGAGTCAAATAC----------------------------------------- | 19 | - | - | - | - | 1 | |
| -----------------------------------AGTCAAATACAACAGTGAA-------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------------------------------TATAAGCCTACTCCTAAGA------------ | 19 | - | - | - | - | 1 | |
| ---------------------------------AGAGTCAAATACAACAGTGA--------------------------------- | 20 | - | - | - | - | 1 | |
| --------------------------------CAGAGTCAAATACAACAGTGA--------------------------------- | 21 | - | - | - | - | 1 | |
| rat | tacaacctgtcttctgaactgttgtatgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcctaagatccatatgttgt | ||||||
| ************************************************************************************** | |||||||
| ------------------------------------------------------------------------------------------------ | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040973 ENSRNOG00000033340 RGD1561446_predicted | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046337 ENSRNOG00000033340 RGD1561446_predicted | ||||||
| rat | .(((((.(((..(((..(((((((((((((......))))..)))))))))....................)))...))).))))) | 0.420 -18.45 | |||||
| rat | chromosome:1:51652395:51652480:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Same_strand|Boundary_non-coding|ENSRNOT00000048434|ENSRNOG00000033340 ## Same_strand|Intronic_non-coding|ENSRNOT00000046337|ENSRNOG00000033340 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## ENSRNOG00000033340|protein_coding|RGD1561446_predicted| |
block964094 [novel_lenNOK_cloningHIGH_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.015 | no | no | 0.21/0.45 | 18/24/0.11 | 0.0 0.0 2.0 | 0.0 0.0 0.6 | 1 73 7 | 0 0 0 | 1 5 3 | 0 0 0 | 26 25 10 | -15 6 14 | 5arm_loop_3arm 3arm 3arm | 23 30 30 | nd nd nd | 0.42 0.58 0.84 | 6 11 13 | 118 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------ACAACAG------------------------------------ | 88 | novel | ||||
| seed | ---------------------------------------------------GAAAUAU---------------------------- | 6 | novel | ||||
| seed | ----------------------------------------------------------AAGCCUA--------------------- | 5 | novel | ||||
| seed | -------------------------------------UCAAAUA------------------------------------------ | 4 | novel | ||||
| seed | ---------------------------------AGAGUCA---------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------CAAAUAC----------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------AUACAAC-------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------AGUCAAA-------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------AUAAGCC----------------------- | 1 | novel | ||||
| seed | ---------------------------------------------AACAGUG---------------------------------- | 1 | novel | ||||
| seed | ---------------------------GACAACA---------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------CAGAGUC----------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------CAACAGU----------------------------------- | 1 | novel | ||||
| seed | ------------------------------------GUCAAAU------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------GAGUCAA--------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| ------------------------------------------TACAACAGTGAAATATAAG------------------------- | 19 | 2 | 9 | 1 | - | 73 | |
| --------------------------------------------------TGAAATATAAGCCTACTCCTAAGA------------ | 24 | - | - | - | - | 5 | |
| ------------------------------------GTCAAATACAACAGTGAAA------------------------------- | 19 | - | - | - | - | 4 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATC---------- | 19 | 1 | - | - | - | 2 | |
| ----------------------------------------AATACAACAGTGAAATATA--------------------------- | 19 | - | - | - | - | 2 | |
| ------------------------------------------TACAACAGTGAAATATAA-------------------------- | 18 | 1 | - | - | - | 1 | |
| ----------------------------------GAGTCAAATACAACAGTGA--------------------------------- | 19 | - | - | - | 1 | 1 | |
| -------------------------------------TCAAATACAACAGTGAAAT------------------------------ | 19 | - | - | - | - | 2 | |
| --------------------------------CAGAGTCAAATACAACAGTGAAA------------------------------- | 23 | - | - | - | - | 1 | |
| -------------------------------ACAGAGTCAAATACAACAGTGAAA------------------------------- | 24 | - | - | - | 1 | - | |
| -------------------------------------------ACAACAGTGAAATATAAGC------------------------ | 19 | - | - | - | - | 1 | |
| ------------------------------------------TACAACAGTGAAATATAAGCC----------------------- | 21 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCC--------- | 20 | - | - | - | 1 | - | |
| --------------------------------------------CAACAGTGAAATATAAGCCT---------------------- | 20 | - | - | - | - | 1 | |
| ---------------------------------------------------------TAAGCCTACTCCTAAGATCCA-------- | 21 | 1 | - | - | - | - | |
| --------------------------------------------------TGAAATATAAGCCTACTC------------------ | 18 | 1 | - | - | - | - | |
| --------------------------TGACAACAGAGTCAAATAC----------------------------------------- | 19 | - | - | - | - | 1 | |
| -----------------------------------AGTCAAATACAACAGTGAA-------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------------------------------TATAAGCCTACTCCTAAGA------------ | 19 | - | - | - | - | 1 | |
| ---------------------------------AGAGTCAAATACAACAGTGA--------------------------------- | 20 | - | - | - | - | 1 | |
| --------------------------------CAGAGTCAAATACAACAGTGA--------------------------------- | 21 | - | - | - | - | 1 | |
| rat | tacaacctgtcttctgaactgttgtatgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcctaagatccatatgttgt | ||||||
| ************************************************************************************** | |||||||
| ------------------------------------------------------------------------------------------------ | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| rat | .(((((.(((..(((..(((((((((((((......))))..)))))))))....................)))...))).))))) | 0.420 -18.45 | |||||
| rat | chromosome:1:52044640:52044725:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block964322 [novel_lenNOK_cloningHIGH_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.21/0.38 | 18/24/0.10 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 73 5 | 0 0 0 | 1 5 2 | 0 0 0 | 18 15 2 | -15 6 14 | 5arm_loop_3arm 3arm 3arm | 23 30 30 | nd nd nd | 0.42 0.58 0.71 | 6 11 15 | 113 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------ACAACAG-------------------------- | 88 | novel | ||||
| seed | -------------------------------------------GAAAUAU------------------ | 6 | novel | ||||
| seed | -----------------------------UCAAAUA-------------------------------- | 4 | novel | ||||
| seed | ------------------------------CAAAUAC------------------------------- | 2 | novel | ||||
| seed | ---------------------------------AUACAAC---------------------------- | 2 | novel | ||||
| seed | ---------------------------AGUCAAA---------------------------------- | 2 | novel | ||||
| seed | -------------------------AGAGUCA------------------------------------ | 2 | novel | ||||
| seed | -------------------GACAACA------------------------------------------ | 1 | novel | ||||
| seed | ------------------------------------CAACAGU------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------AUAAGCC------------- | 1 | novel | ||||
| seed | -------------------------------------AACAGUG------------------------ | 1 | novel | ||||
| seed | --------------------------GAGUCAA----------------------------------- | 1 | novel | ||||
| seed | ----------------------------GUCAAAU--------------------------------- | 1 | novel | ||||
| seed | ------------------------CAGAGUC------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| ----------------------------------TACAACAGTGAAATATAAG--------------- | 19 | 2 | 9 | 1 | - | 73 | |
| ------------------------------------------TGAAATATAAGCCTACTCCTAAGA-- | 24 | - | - | - | - | 5 | |
| ----------------------------GTCAAATACAACAGTGAAA--------------------- | 19 | - | - | - | - | 4 | |
| -----------------------------TCAAATACAACAGTGAAAT-------------------- | 19 | - | - | - | - | 2 | |
| --------------------------GAGTCAAATACAACAGTGA----------------------- | 19 | - | - | - | 1 | 1 | |
| --------------------------------AATACAACAGTGAAATATA----------------- | 19 | - | - | - | - | 2 | |
| ----------------------------------TACAACAGTGAAATATAA---------------- | 18 | 1 | - | - | - | 1 | |
| -----------------------------------ACAACAGTGAAATATAAGC-------------- | 19 | - | - | - | - | 1 | |
| -----------------------ACAGAGTCAAATACAACAGTGAAA--------------------- | 24 | - | - | - | 1 | - | |
| ------------------------CAGAGTCAAATACAACAGTGAAA--------------------- | 23 | - | - | - | - | 1 | |
| ------------------------------------------TGAAATATAAGCCTACTC-------- | 18 | 1 | - | - | - | - | |
| ---------------------------AGTCAAATACAACAGTGAA---------------------- | 19 | - | - | - | - | 1 | |
| ----------------------------------TACAACAGTGAAATATAAGCC------------- | 21 | - | - | - | - | 1 | |
| -----------------------------------------------TATAAGCCTACTCCTAAGA-- | 19 | - | - | - | - | 1 | |
| ------------------------CAGAGTCAAATACAACAGTGA----------------------- | 21 | - | - | - | - | 1 | |
| -------------------------AGAGTCAAATACAACAGTGA----------------------- | 20 | - | - | - | - | 1 | |
| ------------------------------------CAACAGTGAAATATAAGCCT------------ | 20 | - | - | - | - | 1 | |
| ------------------TGACAACAGAGTCAAATAC------------------------------- | 19 | - | - | - | - | 1 | |
| rat | gtcttctgaactgttgtatgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcctaagatg | ||||||
| ******************************************************************** | |||||||
| ------------------------------------------------------------------------------ | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| rat | (((((..(((((((((((((((......))))..)))))))))...............))..))))). | 0.710 -15.36 | |||||
| rat | chromosome:1:52231978:52232045:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
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