other hairpins
novel_lenNOK_cloningHIGH_multiarm_Multihit_nonpairedHIGH_bulgeHIGH (12 loci)
block965141 [novel_lenNOK_cloningHIGH_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.059 | no | no | 0.21/0.45 | 18/24/0.11 | 0.0 0.0 2.0 | 0.0 0.0 0.6 | 1 73 7 | 0 0 0 | 1 5 3 | 0 0 0 | 24 24 9 | -15 6 14 | 5arm_loop_3arm 3arm 3arm | 23 30 30 | nd nd nd | 0.42 0.58 0.63 | 6 11 8 | 118 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------ACAACAG----------------------------------- | 88 | novel | ||||
| seed | -------------------------------------------------GAAAUAU--------------------------- | 6 | novel | ||||
| seed | --------------------------------------------------------AAGCCUA-------------------- | 5 | novel | ||||
| seed | -----------------------------------UCAAAUA----------------------------------------- | 4 | novel | ||||
| seed | -------------------------------AGAGUCA--------------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------AGUCAAA------------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------AUACAAC------------------------------------- | 2 | novel | ||||
| seed | ------------------------------------CAAAUAC---------------------------------------- | 2 | novel | ||||
| seed | ------------------------------CAGAGUC---------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------GUCAAAU------------------------------------------ | 1 | novel | ||||
| seed | --------------------------------GAGUCAA-------------------------------------------- | 1 | novel | ||||
| seed | -------------------------GACAACA--------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------AUAAGCC---------------------- | 1 | novel | ||||
| seed | -------------------------------------------AACAGUG--------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------CAACAGU---------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| ----------------------------------------TACAACAGTGAAATATAAG------------------------ | 19 | 2 | 9 | 1 | - | 73 | |
| ------------------------------------------------TGAAATATAAGCCTACTCCTAAGA----------- | 24 | - | - | - | - | 5 | |
| ----------------------------------GTCAAATACAACAGTGAAA------------------------------ | 19 | - | - | - | - | 4 | |
| -------------------------------------------------------TAAGCCTACTCCTAAGATC--------- | 19 | 1 | - | - | - | 2 | |
| --------------------------------GAGTCAAATACAACAGTGA-------------------------------- | 19 | - | - | - | 1 | 1 | |
| -----------------------------------TCAAATACAACAGTGAAAT----------------------------- | 19 | - | - | - | - | 2 | |
| --------------------------------------AATACAACAGTGAAATATA-------------------------- | 19 | - | - | - | - | 2 | |
| ----------------------------------------TACAACAGTGAAATATAA------------------------- | 18 | 1 | - | - | - | 1 | |
| ------------------------------CAGAGTCAAATACAACAGTGA-------------------------------- | 21 | - | - | - | - | 1 | |
| ----------------------------------------TACAACAGTGAAATATAAGCC---------------------- | 21 | - | - | - | - | 1 | |
| -----------------------------------------------------TATAAGCCTACTCCTAAGA----------- | 19 | - | - | - | - | 1 | |
| -----------------------------ACAGAGTCAAATACAACAGTGAAA------------------------------ | 24 | - | - | - | 1 | - | |
| ------------------------TGACAACAGAGTCAAATAC---------------------------------------- | 19 | - | - | - | - | 1 | |
| ------------------------------------------------TGAAATATAAGCCTACTC----------------- | 18 | 1 | - | - | - | - | |
| -------------------------------AGAGTCAAATACAACAGTGA-------------------------------- | 20 | - | - | - | - | 1 | |
| ---------------------------------AGTCAAATACAACAGTGAA------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------------------------------TAAGCCTACTCCTAAGATCCA------- | 21 | 1 | - | - | - | - | |
| -----------------------------------------ACAACAGTGAAATATAAGC----------------------- | 19 | - | - | - | - | 1 | |
| ------------------------------CAGAGTCAAATACAACAGTGAAA------------------------------ | 23 | - | - | - | - | 1 | |
| -------------------------------------------------------TAAGCCTACTCCTAAGATCC-------- | 20 | - | - | - | 1 | - | |
| ------------------------------------------CAACAGTGAAATATAAGCCT--------------------- | 20 | - | - | - | - | 1 | |
| rat | caacctgtcttttgaactgttgtatgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcctaagatccatacgttg | ||||||
| *********************************************************************************** | |||||||
| --------------------------------------------------------------------------------------------- | ENSRNOT00000059909 ENSRNOG00000030267 RGD1561185_predicted | ||||||
| --------------------------------------------------------------------------------------------- | ENSRNOT00000059908 ENSRNOG00000030267 RGD1561185_predicted | ||||||
| rat | ((((..(((((..(((((((((((((((......))))..)))))))))...............))..)))))......)))) | 0.460 -15.96 | |||||
| rat | chromosome:1:52748575:52748657:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000059908|ENSRNOG00000030267 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000048991|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
block965390 [novel_lenNOK_cloningHIGH_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.039 | no | no | 0.21/0.38 | 18/24/0.06 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 73 1 | 0 0 0 | 1 5 1 | 0 0 0 | 28 29 22 | -15 6 14 | 5arm_loop_3arm 3arm 3arm | 23 30 32 | nd nd nd | 0.42 0.58 1.00 | 6 11 18 | 107 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------------ACAACAG---------------------------------------- | 88 | novel | ||||
| seed | ---------------------------------------UCAAAUA---------------------------------------------- | 4 | novel | ||||
| seed | -----------------------------------AGAGUCA-------------------------------------------------- | 2 | novel | ||||
| seed | ----------------------------------------CAAAUAC--------------------------------------------- | 2 | novel | ||||
| seed | -------------------------------------AGUCAAA------------------------------------------------ | 2 | novel | ||||
| seed | -------------------------------------------AUACAAC------------------------------------------ | 2 | novel | ||||
| seed | -----------------------------------------------AACAGUG-------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------GUCAAAU----------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------GAGUCAA------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------CAGAGUC--------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------CAACAGU--------------------------------------- | 1 | novel | ||||
| seed | -----------------------------GACAACA-------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------GAAAUAU-------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T5S1 | |||
| --------------------------------------------TACAACAGTGAAATATAAG----------------------------- | 19 | 2 | 9 | 1 | - | 73 | |
| --------------------------------------GTCAAATACAACAGTGAAA----------------------------------- | 19 | - | - | - | - | 4 | |
| ------------------------------------GAGTCAAATACAACAGTGA------------------------------------- | 19 | - | - | - | 1 | 1 | |
| ------------------------------------------AATACAACAGTGAAATATA------------------------------- | 19 | - | - | - | - | 2 | |
| --------------------------------------------TACAACAGTGAAATATAA------------------------------ | 18 | 1 | - | - | - | 1 | |
| ---------------------------------------TCAAATACAACAGTGAAAT---------------------------------- | 19 | - | - | - | - | 2 | |
| ----------------------------TGACAACAGAGTCAAATAC--------------------------------------------- | 19 | - | - | - | - | 1 | |
| ----------------------------------CAGAGTCAAATACAACAGTGAAA----------------------------------- | 23 | - | - | - | - | 1 | |
| ----------------------------------------------------TGAAATATAAGCCTACTC---------------------- | 18 | 1 | - | - | - | - | |
| ----------------------------------------------CAACAGTGAAATATAAGCCT-------------------------- | 20 | - | - | - | - | 1 | |
| -----------------------------------AGAGTCAAATACAACAGTGA------------------------------------- | 20 | - | - | - | - | 1 | |
| ----------------------------------CAGAGTCAAATACAACAGTGA------------------------------------- | 21 | - | - | - | - | 1 | |
| ---------------------------------------------ACAACAGTGAAATATAAGC---------------------------- | 19 | - | - | - | - | 1 | |
| --------------------------------------------TACAACAGTGAAATATAAGCC--------------------------- | 21 | - | - | - | - | 1 | |
| ---------------------------------ACAGAGTCAAATACAACAGTGAAA----------------------------------- | 24 | - | - | - | 1 | - | |
| -------------------------------------AGTCAAATACAACAGTGAA------------------------------------ | 19 | - | - | - | - | 1 | |
| rat | gctacaacctgtcttctgaactgttgtatgacaacagagtcaaaTACAACAGTGAAATATAAGcctactcccaagatccatacgttgttgtt | ||||||
| ******************************************************************************************** | |||||||
| ------------------------------------------------------------------------------------------------------ | ENSRNOT00000059908 ENSRNOG00000030267 RGD1561185_predicted | ||||||
| rat | ((.(((((.(((..(((..(((((((((((((......))))..)))))))))....................)))...))).))))).)). | 0.460 -19.75 | |||||
| rat | chromosome:1:52817011:52817102:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000059908|ENSRNOG00000030267 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059909|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
block421598 [novel_lenNOK_cloningHIGH_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.129 | no | no | 0.39/0.44 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 54 14 | 0 0 | 2 2 | 0 0 | 7 46 | 29 -11 | 5arm 5arm_loop_3arm | 13 13 | nd nd | 0.33 0.53 | 4 5 | 70 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------CCUUACA--------------------------------------------------------------- | 18 | novel | |
| seed | --------CCUUACA------------------------------------------------------------------------------------------------------- | 18 | novel | |
| seed | ----------------------------------------------------------------------------------------CCUUACA----------------------- | 18 | novel | |
| seed | -----------------------------------------------GCCUUAC---------------------------------------------------------------- | 8 | novel | |
| seed | ---------------------------------------------------------------------------------------GCCUUAC------------------------ | 8 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -------GCCTTACATATTGTGGAT--------------------------------------------------------------------------------------------- | 18 | 13 | 5 | |
| ---------------------------------------------------------------------------------------GCCTTACATATTGTGGAT------------- | 18 | 13 | 5 | |
| -----------------------------------------------GCCTTACATATTGTGGAT----------------------------------------------------- | 18 | 13 | 5 | |
| --------------------------------------------------------------------------------------GGCCTTACATATTGTGGAT------------- | 19 | 5 | 2 | |
| ----------------------------------------------GGCCTTACATATTGTGGAT----------------------------------------------------- | 19 | 5 | 2 | |
| --------------------------------------------------------------------------------------GGCCTTACATATTGTGGA-------------- | 18 | 1 | - | |
| ----------------------------------------------GGCCTTACATATTGTGGA------------------------------------------------------ | 18 | 1 | - | |
| rat | caggccaGCCTTACATATTGTGGATaaccgggcaactgcgcaggccGGCCTTACATATTGTGGATaaccgggcaactgcgcaggccGGCCTTACATATTGTGGATaacggggcaactg | |||
| ********************************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000012750 ENSRNOG00000009281 Commd1 | |||
| rat | (((....(((((.((((.((((.....((((....((((((((.((((..((((.....))))....))))....)))))))).)))).....)))).))))......)))))..))) | 0.620 -41.10 | ||
| rat | chromosome:14:103657011:103657128:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000056897|ENSRNOG00000009281 ## Opposite_strand|Intronic_coding|ENSRNOT00000012750|ENSRNOG00000009281 ## ENSRNOG00000009281|protein_coding|Commd1|COMM domain containing 1 Gene [Source:MGI (curated);Acc:Commd1-001] ## {Repeats: trf 541 560 0 class=trf} |
novel_lenNOK_cloningOK_Multihit_shortStem (12 loci)
block844070 [novel_lenNOK_cloningOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.257 | no | no | 0.45/0.50 | 18/21/0.29 | 0.2 | 0.5 | 21 | 0 | 4 | 0 | 0 | 5 | 5arm | 18 | nd | 0.25 | 3 | 28 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -UCCAAAC------------------------------------------------------ | 20 | novel | |||
| seed | --CCAAACU----------------------------------------------------- | 8 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| ATCCAAACTATGGGCTGAC------------------------------------------- | 19 | - | 1 | 10 | 1 | |
| ATCCAAACTATGGGCTGACA------------------------------------------ | 20 | - | - | 7 | - | |
| -TCCAAACTATGGGCTGACA------------------------------------------ | 19 | 1 | - | 4 | - | |
| -TCCAAACTATGGGCTGAC------------------------------------------- | 18 | - | 2 | 1 | - | |
| ATCCAAACTATGGGCTGACAG----------------------------------------- | 21 | - | - | 1 | - | |
| rat | ATCCAAACTATGGGCTGACAgtcacagaggtgatgatgtacccctggtcaatgaaaactgga | |||||
| ************************************************************** | ||||||
| ------------------------------------------------------------------------ | ENSRNOT00000049496 ENSRNOG00000031160 LOC685793 | |||||
| ------------------------------------------------------------------------ | ENSRNOT00000042408 ENSRNOG00000031160 LOC685793 | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000059958 ENSRNOG00000030545 LOC685793 | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049483 ENSRNOG00000030545 LOC685793 | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000039913 ENSRNOG00000030545 LOC685793 | |||||
| rat | .((((.((((.(((...((((((((....)))))..))).))).))))..........)))) | 0.900 -13.50 | ||||
| rat | chromosome:1:50083328:50083389:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000049483|ENSRNOG00000030545 ## Same_strand|Intronic_coding|ENSRNOT00000059958|ENSRNOG00000030545 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000050327|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000042408|ENSRNOG00000031160 ## Same_strand|Boundary_non-coding|ENSRNOT00000059959|ENSRNOG00000030545 ## ENSRNOG00000030545|protein_coding|LOC685793| ## ENSRNOG00000031160|protein_coding|LOC685793| |
block844103 [novel_lenNOK_cloningOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.396 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 11 | 0 | 4 | 0 | 1 | 7 | 5arm | 40 | nd | 0.06 | 1 | 12 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --CAGUGCA------------------------------------------------------------ | 12 | miR-148b/152 | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T4S1 | |||
| -TCAGTGCATGACAAGGTT-------------------------------------------------- | 18 | 4 | 1 | 4 | 3 | |
| rat | tTCAGTGCATGACAAGGTTaatctgcaggagcagcaaggattttagacagcttgtgttctgtatctgag | |||||
| ********************************************************************* | ||||||
| ------------------------------------------------------------------------------- | ENSRNOT00000049496 ENSRNOG00000031160 LOC685793 | |||||
| ------------------------------------------------------------------------------- | ENSRNOT00000042408 ENSRNOG00000031160 LOC685793 | |||||
| ------------------------------------------------------------------------------- | ENSRNOT00000050327 ENSRNOG00000031160 LOC685793 | |||||
| ------------------------------------------------------------------------------- | ENSRNOT00000040838 ENSRNOG00000031160 LOC685793 | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000059958 ENSRNOG00000030545 LOC685793 | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049483 ENSRNOG00000030545 LOC685793 | |||||
| rat | .((((((((.((((((((((((((((.......)))..))))......))))).)))).)))).)))). | 0.680 -14.70 | ||||
| rat | chromosome:1:50115717:50115785:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000049483|ENSRNOG00000030545 ## Same_strand|Intronic_coding|ENSRNOT00000059958|ENSRNOG00000030545 ## Same_strand|Boundary_non-coding|ENSRNOT00000039913|ENSRNOG00000030545 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000042408|ENSRNOG00000031160 ## ENSRNOG00000030545|protein_coding|LOC685793| ## ENSRNOG00000031160|protein_coding|LOC685793| |
block845052 [novel_lenNOK_cloningOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.342 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 11 | 0 | 4 | 0 | 2 | 13 | 5arm | 40 | nd | 0.22 | 3 | 12 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---CAGUGCA-------------------------------------------------------------- | 12 | miR-148b/152 | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T4S1 | |||
| --TCAGTGCATGACAAGGTT---------------------------------------------------- | 18 | 4 | 1 | 4 | 3 | |
| rat | ctTCAGTGCATGACAAGGTTgatctgcaggagtagcaaggattttagccagcacgcgttctgtatctgagga | |||||
| ************************************************************************ | ||||||
| rat | ((((((((((.(((...((((....((..((((.......))))..))))))....))).)))).)))))). | 0.700 -17.40 | ||||
| rat | chromosome:1:50436424:50436495:-1 | intergenic |
block846109 [novel_lenNOK_cloningOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.936 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 11 | 0 | 4 | 0 | 2 | 7 | 5arm | 40 | nd | 0.22 | 2 | 12 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---CAGUGCA------------------------------------------------------------- | 12 | miR-148b/152 | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T4S1 | |||
| --TCAGTGCATGACAAGGTT--------------------------------------------------- | 18 | 4 | 1 | 4 | 3 | |
| rat | ctTCAGTGCATGACAAGGTTaatctgcaggagtagcaaggattttagccaactcgcgttctgtatccgagg | |||||
| *********************************************************************** | ||||||
| rat | ((((.(((((.(((..(((((((((((.......))).))...)))))).......))).)))))..)))) | 0.460 -11.80 | ||||
| rat | chromosome:1:50946052:50946122:-1 | intergenic |
block846218 [novel_lenNOK_cloningOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.422 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 11 | 0 | 4 | 0 | 0 | 7 | 5arm | 40 | nd | 0.17 | 2 | 12 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -CAGUGCA----------------------------------------------------------- | 12 | miR-148b/152 | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T4S1 | |||
| TCAGTGCATGACAAGGTT------------------------------------------------- | 18 | 4 | 1 | 4 | 3 | |
| rat | TCAGTGCATGACAAGGTTaatctgcaggagcagcaaggattttagccagctcaggttctgtatctga | |||||
| ******************************************************************* | ||||||
| rat | ((((((((.(((..((((((.((((....))))........)))))).......))).)))).)))) | 0.430 -14.80 | ||||
| rat | chromosome:1:51003541:51003607:-1 | intergenic |
block846293 [novel_lenNOK_cloningOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.257 | no | no | 0.45/0.50 | 18/21/0.29 | 0.2 | 0.5 | 21 | 0 | 4 | 0 | 0 | 5 | 5arm | 18 | nd | 0.25 | 3 | 28 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -UCCAAAC------------------------------------------------------ | 20 | novel | |||
| seed | --CCAAACU----------------------------------------------------- | 8 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| ATCCAAACTATGGGCTGAC------------------------------------------- | 19 | - | 1 | 10 | 1 | |
| ATCCAAACTATGGGCTGACA------------------------------------------ | 20 | - | - | 7 | - | |
| -TCCAAACTATGGGCTGACA------------------------------------------ | 19 | 1 | - | 4 | - | |
| -TCCAAACTATGGGCTGAC------------------------------------------- | 18 | - | 2 | 1 | - | |
| ATCCAAACTATGGGCTGACAG----------------------------------------- | 21 | - | - | 1 | - | |
| rat | ATCCAAACTATGGGCTGACAgtcacagaggtgatgatgtacccctggtcaatgaaaactgga | |||||
| ************************************************************** | ||||||
| rat | .((((.((((.(((...((((((((....)))))..))).))).))))..........)))) | 0.900 -13.50 | ||||
| rat | chromosome:1:51064646:51064707:-1 | intergenic |
block847004 [novel_lenNOK_cloningOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.257 | no | no | 0.45/0.50 | 18/21/0.29 | 0.2 | 0.5 | 21 | 0 | 4 | 0 | 0 | 5 | 5arm | 18 | nd | 0.25 | 3 | 28 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -UCCAAAC------------------------------------------------------ | 20 | novel | |||
| seed | --CCAAACU----------------------------------------------------- | 8 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| ATCCAAACTATGGGCTGAC------------------------------------------- | 19 | - | 1 | 10 | 1 | |
| ATCCAAACTATGGGCTGACA------------------------------------------ | 20 | - | - | 7 | - | |
| -TCCAAACTATGGGCTGACA------------------------------------------ | 19 | 1 | - | 4 | - | |
| -TCCAAACTATGGGCTGAC------------------------------------------- | 18 | - | 2 | 1 | - | |
| ATCCAAACTATGGGCTGACAG----------------------------------------- | 21 | - | - | 1 | - | |
| rat | ATCCAAACTATGGGCTGACAgtcacagaggtgatgatgtacccctggtcaatgaaaactgga | |||||
| ************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||||
| ------------------------------------------------------------------------ | ENSRNOT00000040973 ENSRNOG00000033340 RGD1561446_predicted | |||||
| ------------------------------------------------------------------------ | ENSRNOT00000046337 ENSRNOG00000033340 RGD1561446_predicted | |||||
| rat | .((((.((((.(((...((((((((....)))))..))).))).))))..........)))) | 0.900 -13.50 | ||||
| rat | chromosome:1:51652268:51652329:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000046337|ENSRNOG00000033340 ## Same_strand|Boundary_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000048434|ENSRNOG00000033340 ## Same_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## ENSRNOG00000033340|protein_coding|RGD1561446_predicted| |
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