other hairpins
novel_lenNOK_cloningOK_Multihit_shortStem (12 loci)
block960847 [novel_lenNOK_cloningOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.396 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 11 | 0 | 4 | 0 | 1 | 7 | 5arm | 40 | nd | 0.06 | 1 | 12 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --CAGUGCA------------------------------------------------------------ | 12 | miR-148b/152 | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T4S1 | |||
| -TCAGTGCATGACAAGGTT-------------------------------------------------- | 18 | 4 | 1 | 4 | 3 | |
| rat | tTCAGTGCATGACAAGGTTaatctgcaggagcagcaaggattttagacagcttgtgttctgtatctgag | |||||
| ********************************************************************* | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049496 ENSRNOG00000031160 LOC685793 | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042408 ENSRNOG00000031160 LOC685793 | |||||
| ------------------------------------------------------------------------------- | ENSRNOT00000059958 ENSRNOG00000030545 LOC685793 | |||||
| ------------------------------------------------------------------------------- | ENSRNOT00000049483 ENSRNOG00000030545 LOC685793 | |||||
| ------------------------------------------------------------------------------- | ENSRNOT00000039913 ENSRNOG00000030545 LOC685793 | |||||
| rat | .((((((((.((((((((((((((((.......)))..))))......))))).)))).)))).)))). | 0.680 -14.70 | ||||
| rat | chromosome:1:50096885:50096953:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000039913|ENSRNOG00000030545 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059959|ENSRNOG00000030545 ## Same_strand|Boundary_non-coding|ENSRNOT00000050327|ENSRNOG00000031160 ## Same_strand|Intronic_non-coding|ENSRNOT00000042408|ENSRNOG00000031160 ## Opposite_strand|Intronic_coding|ENSRNOT00000059958|ENSRNOG00000030545 ## ENSRNOG00000030545|protein_coding|LOC685793| ## ENSRNOG00000031160|protein_coding|LOC685793| |
block962527 [novel_lenNOK_cloningOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.342 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 11 | 0 | 4 | 0 | 2 | 13 | 5arm | 40 | nd | 0.22 | 3 | 12 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---CAGUGCA-------------------------------------------------------------- | 12 | miR-148b/152 | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T4S1 | |||
| --TCAGTGCATGACAAGGTT---------------------------------------------------- | 18 | 4 | 1 | 4 | 3 | |
| rat | ctTCAGTGCATGACAAGGTTgatctgcaggagtagcaaggattttagccagcacgcgttctgtatctgagga | |||||
| ************************************************************************ | ||||||
| rat | ((((((((((.(((...((((....((..((((.......))))..))))))....))).)))).)))))). | 0.700 -17.40 | ||||
| rat | chromosome:1:51442762:51442833:1 | intergenic |
block964067 [novel_lenNOK_cloningOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.886 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 11 | 0 | 4 | 0 | 3 | 7 | 5arm | 40 | nd | 0.28 | 3 | 12 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----CAGUGCA------------------------------------------------------------ | 12 | miR-148b/152 | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T4S1 | |||
| ---TCAGTGCATGACAAGGTT-------------------------------------------------- | 18 | 4 | 1 | 4 | 3 | |
| rat | gctTCAGTGCATGACAAGGTTaatctgcaggagtagcaaggattttagccagctcgcgttctgtatctgcg | |||||
| *********************************************************************** | ||||||
| --------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||||
| rat | ((..(((.((.(((...(((((((((((.......))).))...))))))...))).)).))).....)). | 0.840 -13.70 | ||||
| rat | chromosome:1:52030768:52030838:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block2066295 [novel_lenNOK_cloningOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.263 | no | no | 0.42/0.47 | 18/22/0.10 | 0.3 | 0.3 | 7 | 0 | 2 | 0 | 4 | 14 | 3arm | 23 | nd | 0.26 | 3 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------CGGUUUG---------------- | 6 | novel | |
| seed | --------------------------------------------------------------------------GGUUUGU--------------- | 4 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ------------------------------------------------------------------------CCGGTTTGTGTCAGTAGAA----- | 19 | - | 5 | |
| -------------------------------------------------------------------------CGGTTTGTGTCAGTAGAAT---- | 19 | 1 | 2 | |
| ------------------------------------------------------------------------CCGGTTTGTGTCAGTAGAATTG-- | 22 | 1 | - | |
| -------------------------------------------------------------------------CGGTTTGTGTCAGTAGAA----- | 18 | 1 | - | |
| rat | gcactttactctcagaatagatacctccaaggtgatctccaagttcttcctcagtcttgaggtttgggattcCCGGTTTGTGTCAGTAGAATtgtg | |||
| ************************************************************************************************ | ||||
| rat | (((.((((((.........(((((..((..((..(((.(((((.....((((......))))))))))))..))))...)))))))))))..))). | 0.860 -23.00 | ||
| rat | chromosome:6:134318009:134318104:1 | intergenic |
block2066330 [novel_lenNOK_cloningOK_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.263 | no | no | 0.42/0.47 | 18/22/0.10 | 0.3 | 0.3 | 7 | 0 | 2 | 0 | 4 | 14 | 3arm | 23 | nd | 0.26 | 3 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------CGGUUUG---------------- | 6 | novel | |
| seed | --------------------------------------------------------------------------GGUUUGU--------------- | 4 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ------------------------------------------------------------------------CCGGTTTGTGTCAGTAGAA----- | 19 | - | 5 | |
| -------------------------------------------------------------------------CGGTTTGTGTCAGTAGAAT---- | 19 | 1 | 2 | |
| ------------------------------------------------------------------------CCGGTTTGTGTCAGTAGAATTG-- | 22 | 1 | - | |
| -------------------------------------------------------------------------CGGTTTGTGTCAGTAGAA----- | 18 | 1 | - | |
| rat | gcactttactctcagaatagatacctccaaggtgatctccaagttcttcctcagtcttgaggtttgggattcCCGGTTTGTGTCAGTAGAATtgtg | |||
| ************************************************************************************************ | ||||
| rat | (((.((((((.........(((((..((..((..(((.(((((.....((((......))))))))))))..))))...)))))))))))..))). | 0.860 -23.00 | ||
| rat | chromosome:6:134326921:134327016:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH (12 loci)
sblock10568 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.582 | no | no | 0.63/0.72 | 18/21/0.15 | 0.0 2.5 | 0.8 2.5 | 9 4 | 0 0 | 7 4 | 0 0 | 7 9 | 7 2 | 5arm 3arm | 1 1 | nd nd | 0.33 0.32 | 3 4 | 13 | 8 | -2 | -3 |
| reads | miRBase family seed | |||||||||
| seed | --------UCGUCGG-------------------------------------------------------------- | 9 | novel | |||||||
| seed | --------------------------------------------------GACGCCA-------------------- | 1 | novel | |||||||
| seed | ------------------------------------------------CCGACGC---------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------UCCGACG----------------------- | 1 | novel | |||||||
| seed | ---------------------------------------------AAUCCGA------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -------ATCGTCGGCGCGCTTCCC---------------------------------------------------- | 18 | 2 | 1 | 1 | - | - | - | - | 1 | |
| -------ATCGTCGGCGCGCTTCCCT--------------------------------------------------- | 19 | - | - | - | 2 | - | - | - | - | |
| -----------------------------------------------TCCGACGCCATCTGCCACC----------- | 19 | - | 1 | - | - | - | - | - | - | |
| --------------------------------------------GAATCCGACGCCATCTGCC-------------- | 19 | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------ATCCGACGCCATCTGCCAC------------ | 19 | - | - | - | 1 | - | - | - | - | |
| -------ATCGTCGGCGCGCTTCCCTGT------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | - | |
| -------ATCGTCGGCGCGCTTCCCTG-------------------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------CGACGCCATCTGCCACCAT--------- | 19 | - | - | - | - | 1 | - | - | - | |
| rat | cgccgccATCGTCGGCGCGCTTCCCTGTtcacctctgtatttgaGAATCCGACGCCATCTGCCACCATggtgagtgt | |||||||||
| ***************************************************************************** | ||||||||||
| rat | (((((((((.((.((((.((.((...((((...((.......))))))..)).))....)))))).)))))).))). | 0.710 -19.10 | ||||||||
| rat | chromosome:7:10022258:10022334:-1 | intergenic |
sblock11458 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.152 | no | no | 0.28/0.57 | 19/26/0.27 | 0.0 0.0 4.7 0.7 | 0.0 0.0 1.8 0.0 | 1 1 9 3 | 0 0 0 0 | 1 1 2 2 | 0 0 0 0 | 0 38 6 0 | 28 -11 0 19 | 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.55 0.57 0.35 0.50 | 5 8 4 5 | 15 | 4 | -11 | -10 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------------------AGUUCUU----------------- | 6 | novel | |||
| seed | ---------------------------------------------------------AGCACCU-------------------------------- | 2 | novel | |||
| seed | ------------------------------------------------------------------AAUUCUA----------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------------------CUUACAU------------- | 2 | novel | |||
| seed | ------------------------------------------------------------------------------UACAUCC----------- | 1 | novel | |||
| seed | -CCUCUGG---------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------GCACAGC-------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T4S1 | T5S1 | |||
| -----------------------------------------------------------------------TAGTTCTTACATCCATGTT------ | 19 | - | 1 | - | 5 | |
| --------------------------------------------------------GAGCACCTATAATTCTAGTTCTTACA-------------- | 26 | - | - | - | 2 | |
| ---------------------------------------------------------------------------TCTTACATCCATGTTACCCAC | 21 | - | - | - | 2 | |
| -----------------------------------------------------------------TAATTCTAGTTCTTACATCCATGTT------ | 25 | - | - | - | 2 | |
| TCCTCTGGGCTCTTTGTTGA---------------------------------------------------------------------------- | 20 | - | - | 1 | - | |
| --------------------------------------GGCACAGCTCTGCTTTGTGAG------------------------------------- | 21 | - | - | - | 1 | |
| -----------------------------------------------------------------------------TTACATCCATGTTACCCAC | 19 | 1 | - | - | - | |
| rat | tcctctgggctctttgttgatttctgatacttgaatttggcacagctctgctttgtGAGCACCTATAATTCTAGTTCTTACATCCATGTTACCCAC | |||||
| ************************************************************************************************ | ||||||
| rat | .....((((.....((..(((....((.(((.(((((.((....((((........)))).))...))))).)))))....))))).....)))). | 0.600 -17.10 | ||||
| rat | chromosome:7:121568664:121568759:1 | intergenic |
sblock11656 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.071 | no | no | 0.32/0.58 | 18/25/0.42 | 0.0 1.3 0.0 1.5 0.7 | 0.0 3.0 0.0 0.5 0.0 | 9 6 1 2 6 | 0 0 0 0 0 | 3 1 1 2 2 | 0 0 0 0 0 | 10 15 25 48 6 | 25 14 4 -16 22 | 5arm 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.47 0.48 0.40 0.64 0.40 | 5 5 5 14 5 | 36 | 5 | 7 | 8 |
| reads | miRBase family seed | ||||||
| seed | -----------GGGGAAU---------------------------------------------------------------------------------------------------- | 11 | novel | ||||
| seed | ---------------------------------------------------------------------------------------------CCUUGGG------------------ | 5 | novel | ||||
| seed | ---------GUGGGGA------------------------------------------------------------------------------------------------------ | 4 | novel | ||||
| seed | ------------------GGAACAA--------------------------------------------------------------------------------------------- | 4 | novel | ||||
| seed | -----GGCUGUG---------------------------------------------------------------------------------------------------------- | 4 | novel | ||||
| seed | -------------------------------------------------------------------------------------------CUCCUUG-------------------- | 2 | novel | ||||
| seed | ----------------AUGGAAC----------------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | ----------------------------------------------------AGGUCAC----------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------------------------------------------------------------------GGGCUUA-------------- | 1 | miR-27a* | ||||
| seed | -------------------------------------------------CUGAGGU-------------------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------AACGGAA------------------------------------------------------------------------------------- | 1 | miR-191 | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T3S2 | T5S1 | T5S2 | |||
| ----------TGGGGAATGGAACAATAAC----------------------------------------------------------------------------------------- | 19 | 1 | 1 | - | 9 | - | |
| --------------------------------------------------------------------------------------------TCCTTGGGCTTACAGGATTG------ | 20 | - | - | 1 | 4 | - | |
| --------TGTGGGGAATGGAACAATA------------------------------------------------------------------------------------------- | 19 | 1 | 1 | - | 2 | - | |
| -----------------TGGAACAATAACGGAAAAAGCAC------------------------------------------------------------------------------ | 23 | - | - | - | 2 | - | |
| ------------------------------------------------------------------------------------------TCTCCTTGGGCTTACAGGATTG------ | 22 | - | - | - | 2 | - | |
| ----TGGCTGTGGGGAATGGAACA---------------------------------------------------------------------------------------------- | 20 | - | - | - | 2 | - | |
| ---------------AATGGAACAATAACGGAAA------------------------------------------------------------------------------------ | 19 | - | - | - | 2 | - | |
| -----------------TGGAACAATAACGGAAAAAG--------------------------------------------------------------------------------- | 20 | - | - | - | 2 | - | |
| ----TGGCTGTGGGGAATGGAAC----------------------------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| ------------------------------------------------TCTGAGGTCACTATTTCACACT------------------------------------------------ | 22 | - | - | - | 1 | - | |
| ------------------------------------------------------------------------------------------------TGGGCTTACAGGATTGCCCTCA | 22 | - | - | - | 1 | - | |
| ---------------------------------------------------GAGGTCACTATTTCACAC------------------------------------------------- | 18 | - | - | - | - | 1 | |
| ----TGGCTGTGGGGAATGGAA------------------------------------------------------------------------------------------------ | 18 | - | - | - | 1 | - | |
| -------------------------TAACGGAAAAAGCACGACTTTCTTC-------------------------------------------------------------------- | 25 | - | - | - | 1 | - | |
| rat | ggcatggctgTGGGGAATGGAACAATAACggaaaaagcacgactttcttctgaggtcactatttcacacttagaagatggtggtgtcctgtcTCCTTGGGCTTACAGGATTGccctca | ||||||
| ********************************************************************************************************************** | |||||||
| rat | ((((...(((((((....((((((.....((.....((((.(((.(((((((((..............))))))))).))).))))))))).))).....)))))))...)))).... | 0.920 -37.04 | |||||
| rat | chromosome:8:57726560:57726677:-1 | intergenic |
sblock1900 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.100 | no | no | 0.26/0.41 | 19/26/0.35 | 0.0 1.0 1.3 0.0 | 0.0 0.0 1.6 0.0 | 16 3 9 3 | 0 0 0 0 | 3 1 2 1 | 0 0 0 0 | 12 16 14 9 | 13 4 0 11 | 5arm 5arm 3arm 3arm | 2 2 2 2 | nd nd nd nd | 0.53 0.41 0.35 0.55 | 5 5 4 5 | 34 | 4 | -3 | -1 |
| reads | miRBase family seed | |||||
| seed | -------------UCUUUCC-------------------------------------------------------------------- | 19 | novel | |||
| seed | -------------------------------------------------CUGCAUC-------------------------------- | 4 | novel | |||
| seed | ---------------------------------------------------GCAUCUU------------------------------ | 4 | novel | |||
| seed | ------------------------------------------------------------ACUAUGA--------------------- | 3 | novel | |||
| seed | -------------------------------------------------------CUUUUAC-------------------------- | 1 | novel | |||
| seed | -------------------CAAGGCA-------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------CCAAGGC--------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------UCCAAGG---------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| ------------TTCTTTCCAAGGCAAAATA--------------------------------------------------------- | 19 | 2 | 1 | 16 | - | |
| -----------------------------------------------------------TACTATGAACTTGACTTTGA--------- | 20 | - | - | 3 | - | |
| --------------------------------------------------TGCATCTTTTACTATGAACTT----------------- | 21 | - | - | 2 | - | |
| ------------------------------------------------TCTGCATCTTTTACTATGAACTT----------------- | 23 | - | - | 1 | - | |
| -----------------TCCAAGGCAAAATATCATGAGTG------------------------------------------------ | 23 | - | - | 1 | - | |
| ------------------------------------------------------TCTTTTACTATGAACTTGA--------------- | 19 | - | - | 1 | - | |
| ------------------------------------------------TCTGCATCTTTTACTATGAACTTGAC-------------- | 26 | - | - | 1 | - | |
| ----------------TTCCAAGGCAAAATATCATGAGTG------------------------------------------------ | 24 | - | - | 1 | - | |
| --------------------------------------------------TGCATCTTTTACTATGAACT------------------ | 20 | - | - | 1 | - | |
| --------------------------------------------------TGCATCTTTTACTATGAACTTGAC-------------- | 24 | - | - | 1 | - | |
| ------------------------------------------------TCTGCATCTTTTACTATGA--------------------- | 19 | - | - | - | 1 | |
| ------------------------------------------------TCTGCATCTTTTACTATGAACT------------------ | 22 | - | - | 1 | - | |
| ------------------CCAAGGCAAAATATCATGAGTG------------------------------------------------ | 22 | - | - | 1 | - | |
| rat | actcatggcttgTTCTTTCCAAGGCAAAATAtcatgagtgcagaaccctctgcatcttttactatgaacttgactttgatgccaggta | |||||
| **************************************************************************************** | ||||||
| rat | (((..((((....((....((((.....(((....(((((((((....)))))).)))....)))...)))).....)).))))))). | 0.690 -18.60 | ||||
| rat | chromosome:1:128263972:128264059:1 | intergenic |
sblock2563 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.097 | no | no | 0.78/0.89 | 18/20/0.40 | 1.3 0.0 | 2.0 0.0 | 7 3 | 0 0 | 3 2 | 0 0 | 10 1 | 9 27 | 5arm 3arm | 1 1 | nd nd | 0.35 0.33 | 3 4 | 10 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | ----------------CGGCACG------------------------------------------------------------------------- | 3 | novel | |||
| seed | ------------------------------------------------------------------------------CCCGCGU----------- | 3 | novel | |||
| seed | ---------------GCGGCAC-------------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------GGCAGCG------------------------------------------------------------------------------ | 1 | novel | |||
| seed | -----------------GGCACGG------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T2S2 | T3S1 | |||
| ---------------GCGGCACGGCTCCCGGTCCC------------------------------------------------------------- | 20 | 2 | 1 | - | - | |
| -----------------------------------------------------------------------------CCCCGCGTCCCGCCGCCA- | 18 | - | 2 | 1 | - | |
| --------------AGCGGCACGGCTCCCGGT---------------------------------------------------------------- | 18 | - | 2 | - | - | |
| ----------------CGGCACGGCTCCCGGTCCC------------------------------------------------------------- | 19 | 1 | - | - | - | |
| ----------TGGCAGCGGCACGGCTCCCG------------------------------------------------------------------ | 20 | - | - | - | 1 | |
| rat | actgcggccgTGGCAGCGGCACGGCTCCCGGTCCCggagcatgcgcgacagcagccccggaacccccagccgcggcgCCCCGCGTCCCGCCGCCAg | |||||
| ************************************************************************************************ | ||||||
| rat | .((((((((((((..((.((..((((...(((.((((.((.(((......))))).)))).)))...)))))).))...)))))....))))).)) | 0.980 -46.80 | ||||
| rat | chromosome:10:4819323:4819418:1 | intergenic ## {SimpF: 1 Eponine,oe = 0.80 0 CpG} |
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