other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH (12 loci)
sblock3133 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.443 | no | no | 0.45/0.61 | 18/21/0.20 | 3.5 0.0 0.0 | 1.4 0.0 0.0 | 8 1 1 | 0 0 0 | 5 1 1 | 0 0 0 | 8 19 11 | 6 1 5 | 5arm 5arm 3arm | 2 2 2 | 35 31 1 | 0.42 0.45 0.39 | 4 4 4 | 10 | 7 | 7 | 5 |
| reads | miRBase family seed | ||||||||
| seed | ------------CCGGUCU----------------------------------------------------------- | 3 | novel | ||||||
| seed | --------------GGUCUAG--------------------------------------------------------- | 2 | novel | ||||||
| seed | -----------UCCGGUC------------------------------------------------------------ | 1 | novel | ||||||
| seed | ---------GGUCCGG-------------------------------------------------------------- | 1 | novel | ||||||
| seed | ----------------UCUAGGU------------------------------------------------------- | 1 | novel | ||||||
| seed | --------------------------------------------------GGUGAGG--------------------- | 1 | novel | ||||||
| seed | --------------------GGUACAG--------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| -----------TCCGGTCTAGGTACAGAT------------------------------------------------- | 18 | 1 | - | 1 | 1 | - | - | - | |
| --------GGGTCCGGTCTAGGTACAGAT------------------------------------------------- | 21 | - | - | - | - | - | - | 1 | |
| -------------CGGTCTAGGTACAGATTC----------------------------------------------- | 18 | - | - | - | - | 1 | - | - | |
| ----------GTCCGGTCTAGGTACAGA-------------------------------------------------- | 18 | - | - | - | - | 1 | - | - | |
| -------------------------------------------------AGGTGAGGTGCGACAGGT----------- | 18 | - | 1 | - | - | - | - | - | |
| -------------------AGGTACAGATTCTGCATTGC--------------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| -------------CGGTCTAGGTACAGATTCT---------------------------------------------- | 19 | 1 | - | - | - | - | - | - | |
| ---------------GTCTAGGTACAGATTCTGC-------------------------------------------- | 19 | - | - | - | - | 1 | - | - | |
| rat | gagcctctGGGTCCGGTCTAGGTACAGATTCTGCATTGCgagcccgggcAGGTGAGGTGCGACAGGTaactggtggct | ||||||||
| ****************************************************************************** | |||||||||
| ....................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++ | ENSRNOT00000002727 ENSRNOG00000001992 LOC685232 | ||||||||
| rat | .((((.((((..((.(((...((((....(((((....((....)).)))))....))))))).))...)))).)))) | 0.430 -26.40 | |||||||
| rat | chromosome:11:58127347:58127424:1 | Same_strand|Boundary_non-coding|ENSRNOT00000002727|ENSRNOG00000001992 ## ENSRNOG00000001992|protein_coding|LOC685232|ATPase, H transporting, lysosomal V1 subunit A [Source:RefSeq_peptide;Acc:NP_001101788] |
sblock7217 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.360 | no | no | 0.33/0.57 | 18/25/0.37 | 0.0 0.3 0.0 8.1 3.5 | 0.0 0.3 0.0 9.4 2.5 | 1 3 1 20 2 | 0 0 0 0 0 | 1 1 1 7 1 | 0 0 0 0 0 | 0 39 47 18 0 | 29 -7 -13 1 33 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm | 1 1 2 2 2 | nd nd nd nd nd | 0.43 0.37 0.61 0.32 0.35 | 4 4 5 4 5 | 27 | 7 | -19 | -19 |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------------------------------------AACCAUG---------------------------------------------------- | 5 | novel | ||||||
| seed | ----------------------------------------------------------------------CUCUACU---------------------------------------- | 4 | novel | ||||||
| seed | ------------------------------------------------------------------------CUACUCC-------------------------------------- | 3 | novel | ||||||
| seed | -----------------------------------------------------------------------------CCUCCAG--------------------------------- | 3 | novel | ||||||
| seed | ----------------------------------------GGGUGGC---------------------------------------------------------------------- | 2 | novel | ||||||
| seed | --------------------------------------------------------------------------------CCAGUCA------------------------------ | 2 | novel | ||||||
| seed | ------------------------------------------------AGAAGAA-------------------------------------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------GGUGGCC--------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------------------GUGCCUC---------------------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------------------------------UCCAGUC------------------------------- | 1 | novel | ||||||
| seed | ------------------------------------------------------------------------------------------AAACCCU-------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------------------------------------------------GAUGCUU------------- | 1 | novel | ||||||
| seed | --------------------------------------------------------------------------ACUCCUC------------------------------------ | 1 | novel | ||||||
| seed | -GACAUUU------------------------------------------------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T2S2 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------------TCTCTACTCCTCCAGTCAC----------------------------- | 19 | 2 | - | - | - | - | 2 | - | |
| -----------------------------------------------------------------------TCTACTCCTCCAGTCACCT--------------------------- | 19 | - | 1 | 1 | - | 1 | - | - | |
| ---------------------------------------------------------TAACCATGTGCCTCTCTACTCCTCC----------------------------------- | 25 | 1 | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------------------TCCTCCAGTCACCTAAACCCTGA------------------ | 23 | - | - | - | - | - | 3 | - | |
| ---------------------------------------TGGGTGGCCAGAAGAAATT----------------------------------------------------------- | 19 | - | - | - | - | - | 2 | - | |
| ---------------------------------------------------------TAACCATGTGCCTCTCTACTC--------------------------------------- | 21 | - | - | - | - | 1 | - | 1 | |
| -------------------------------------------------------------------------------TCCAGTCACCTAAACCCT-------------------- | 18 | - | 1 | - | 1 | - | - | - | |
| TGACATTTGCTTAGTGGTGTCTG---------------------------------------------------------------------------------------------- | 23 | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------------CTCCAGTCACCTAAACCC--------------------- | 18 | 1 | - | - | - | - | - | - | |
| -----------------------------------------------CAGAAGAAATTAACCATG---------------------------------------------------- | 18 | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------------------------------TAAACCCTGATGCTTGGCCTGTC----- | 23 | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------TACTCCTCCAGTCACCTAAACCC--------------------- | 23 | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------TGTGCCTCTCTACTCCTCCAGT-------------------------------- | 22 | - | - | - | - | - | 1 | - | |
| ----------------------------------------GGGTGGCCAGAAGAAATTA---------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------------------------------TGATGCTTGGCCTGTCCCGTT | 21 | - | - | - | - | - | 1 | - | |
| rat | TGACATTTGCTTAGTGGTGTCTGctaggtgctgtcatggTGGGTGGCCAGAAGAAATTAACCATGTGCCTCTCTACTCCTCCAGTCACCTAAACCCTGATGCTTGGCCTGTCCCGTT | ||||||||
| ********************************************************************************************************************* | |||||||||
| rat | .((((...(((....((((((...(((((((((....((((((.(((((.((....)).....)).))).))).)))....))).))))))......)))))).))).))))..... | 0.980 -32.30 | |||||||
| rat | chromosome:20:5561005:5561121:1 | intergenic |
sblock7233 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.134 | no | no | 0.47/0.72 | 18/22/0.65 | 0.2 0.0 0.0 1.5 1.4 | 0.4 0.0 0.0 0.5 1.0 | 10 1 1 2 5 | 0 0 0 0 0 | 3 1 1 2 3 | 0 0 0 0 0 | 0 31 40 38 22 | 33 6 -7 -3 10 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.48 0.61 0.55 0.39 0.37 | 8 6 6 4 5 | 20 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | -GGAAACU------------------------------------------------------------------------------------------------------------- | 8 | novel | |||
| seed | -----------------------------------------------------------------------------GCAAAAU--------------------------------- | 3 | novel | |||
| seed | --GAAACUC------------------------------------------------------------------------------------------------------------ | 3 | novel | |||
| seed | --------------------------------------------------------------GUGCGUC------------------------------------------------ | 1 | novel | |||
| seed | ------------------------------------------------------------------------GAGCUGC-------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------GAGGUGC--------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------CAGAACC--------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------------------CUGCAAA----------------------------------- | 1 | novel | |||
| seed | --------------------------------CUAGCUC------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| TGGAAACTCAAGAGCACCCT------------------------------------------------------------------------------------------------- | 20 | 2 | - | 4 | 2 | |
| ----------------------------------------------------------------------------TGCAAAATGGGGTGGGATA---------------------- | 19 | - | 1 | 2 | - | |
| -GGAAACTCAAGAGCACCCTTT----------------------------------------------------------------------------------------------- | 21 | - | - | 2 | - | |
| -------------------------------TCTAGCTCTTCAGAACCC-------------------------------------------------------------------- | 18 | 1 | - | - | - | |
| ----------------------------------------------------------TGAGGTGCGTCCCTGAGCTG--------------------------------------- | 20 | - | - | 1 | - | |
| --------------------------------------------------------------------------GCTGCAAAATGGGGTGGGA------------------------ | 19 | 1 | - | - | - | |
| -------------------------------------------------------------GGTGCGTCCCTGAGCTGC-------------------------------------- | 18 | - | - | - | 1 | |
| -GGAAACTCAAGAGCACCC-------------------------------------------------------------------------------------------------- | 18 | - | - | 1 | - | |
| ----------------------------------------TCAGAACCCAGTACCCCCTGAG------------------------------------------------------- | 22 | - | - | 1 | - | |
| -----------------------------------------------------------------------TGAGCTGCAAAATGGGGTGGG------------------------- | 21 | 1 | - | - | - | |
| rat | TGGAAACTCAAGAGCACCCTTTatcctgctttctagctcttcagaacccagtaccccctgaggtgcgtccctgagcTGCAAAATGGGGTGGGATAatggtggctaagaaggtgctct | |||||
| ********************************************************************************************************************* | ||||||
| rat | ..........((((((((..((((((..((((...((..(((((......(((((......)))))....)))))..)).....))))..)))))).............)))))))) | 0.590 -35.86 | ||||
| rat | chromosome:20:5564567:5564683:1 | intergenic |
sblock7997 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.017 | no | no | 0.39/0.68 | 19/26/0.67 | 4.2 0.0 0.5 0.0 3.7 | 3.8 0.0 0.0 0.0 3.3 | 8 1 2 1 6 | 0 0 0 0 0 | 2 1 1 1 3 | 0 0 0 0 0 | 7 36 41 46 21 | 11 2 -4 -10 3 | 5arm 5arm 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.54 0.37 0.50 0.48 0.46 | 7 4 5 5 4 | 18 | 4 | 0 | -12 |
| reads | miRBase family seed | |||||
| seed | --------AGGGAUC------------------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ------------------------------------------------------------------------GGUGCCU--------------------------------------- | 2 | novel | |||
| seed | ------------------------------------------------------------------GCCAAAG--------------------------------------------- | 2 | novel | |||
| seed | ------------------UCUUGAA--------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ------------------------------------------CCUCUGC--------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------CUUCUUG----------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------------AAAGGUG------------------------------------------ | 1 | novel | |||
| seed | -----------------------AACUUCU---------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------UCUCUUC-------------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------GGCCUCC-------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------GCCUCCA---------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------CUCUGCC-------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------------GUGCCUU-------------------------------------- | 1 | novel | |||
| seed | --------------------UUGAACU------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T3S1 | T3S2 | T5S1 | |||
| -----------------TTCTTGAACTTCTGGGATCTG-------------------------------------------------------------------------------- | 21 | - | - | - | 2 | |
| -----------------------------------------------------------------TGCCAAAGGTGCCTTACTCCCTCA----------------------------- | 24 | - | - | - | 2 | |
| ------------------------------------TGGCCTCCTCTGCCTCCAG--------------------------------------------------------------- | 19 | 1 | - | - | - | |
| -------TAGGGATCTCTTCTTGAACTTCT---------------------------------------------------------------------------------------- | 23 | - | - | - | 1 | |
| ------------------------------------------CCTCTGCCTCCAGGCTTGT--------------------------------------------------------- | 19 | - | - | - | 1 | |
| ------------ATCTCTTCTTGAACTTCTGGGATC---------------------------------------------------------------------------------- | 24 | - | - | - | 1 | |
| --------------------------------------------------------------------CAAAGGTGCCTTACTCCCTCATTG-------------------------- | 24 | - | - | - | 1 | |
| ----------------------------------------------TGCCTCCAGGCTTGTTGCCTG--------------------------------------------------- | 21 | - | - | - | 1 | |
| ------------------------------------------------------------------------GGTGCCTTACTCCCTCATTGCCCCC--------------------- | 25 | - | 1 | - | - | |
| -------------------CTTGAACTTCTGGGATCTG-------------------------------------------------------------------------------- | 19 | - | - | 1 | - | |
| -----------------------------------------------------------------------AGGTGCCTTACTCCCTCATTGCCCCC--------------------- | 26 | - | - | - | 1 | |
| ----------------------GAACTTCTGGGATCTGGCCTCCTC------------------------------------------------------------------------ | 24 | - | - | - | 1 | |
| ---------------TCTTCTTGAACTTCTGGGATCTGG------------------------------------------------------------------------------- | 24 | - | - | - | 1 | |
| -----------------------------------------------------------------------AGGTGCCTTACTCCCTCAT---------------------------- | 19 | 1 | - | - | - | |
| -------TAGGGATCTCTTCTTGAACT------------------------------------------------------------------------------------------- | 20 | - | - | - | 1 | |
| -----------------------------------------TCCTCTGCCTCCAGGCTTGT--------------------------------------------------------- | 20 | - | - | - | 1 | |
| rat | aggtctcTAGGGATCTCTTCTTGAACTTCTGGGATCTGGCCTCCTCTGCCTCCAGGCTTGTTGCCTGCCAAAGGTGCCTTACTCCCTCATTGCCCCCatctgtggtcacctgatgacc | |||||
| ********************************************************************************************************************** | ||||||
| rat | .((((..((((((((...............((((...(((..(((.((....(((((.....))))).)).))).)))....)))).................)))).))))..)))) | 0.580 -36.55 | ||||
| rat | chromosome:3:76949172:76949289:1 | intergenic |
sblock9110 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.37/0.54 | 19/26/0.67 | 0.0 3.0 2.0 | 0.0 5.0 4.0 | 5 2 10 | 0 0 0 | 1 1 4 | 0 0 0 | 7 25 15 | 21 -8 4 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.38 0.46 0.42 | 5 4 10 | 21 | 4 | -19 | 0 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------------CCCAUAG-------------------------------------- | 8 | novel | |||
| seed | ---------------------------------------------------------------AGCUGUU--------------------------------- | 5 | novel | |||
| seed | --------GUCAAAA---------------------------------------------------------------------------------------- | 5 | novel | |||
| seed | --------------------------CUAUCCA---------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------CAAAAAU-------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------ACAACAG---------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S1 | T5S1 | |||
| ---------------------------------------------------------TCCCATAGCTGTTTCCTCACA------------------------- | 21 | 1 | 2 | - | 4 | |
| -------TGTCAAAAATGGAGACCATCT--------------------------------------------------------------------------- | 21 | - | - | - | 5 | |
| --------------------------------------------------------------TAGCTGTTTCCTCACATAGGTTACCA--------------- | 26 | - | - | - | 4 | |
| --------------------------------------------------------------TAGCTGTTTCCTCACATAGGTT------------------- | 22 | - | - | - | 1 | |
| ---------------------------------------------------------TCCCATAGCTGTTTCCTCA--------------------------- | 19 | - | - | 1 | - | |
| -------------------------------CACAACAGCTCTGGTCACTTGAGTCC---------------------------------------------- | 26 | - | - | - | 1 | |
| -------------------------TCTATCCACAACAGCTCTGGTC-------------------------------------------------------- | 22 | - | - | - | 1 | |
| ---------TCAAAAATGGAGACCATCT--------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| rat | acagcaaTGTCAAAAATGGAGACCATCTatccacaacagctctggtcacttgagtccTCCCATAGCTGTTTCCTCACATAGGTTACCAtaagttggcagtctg | |||||
| ******************************************************************************************************* | ||||||
| rat | .(((...((((((..((((.((((..........(((((((.(((..((....))....))).)))))))..........)))).))))...))))))..))) | 1.000 -28.65 | ||||
| rat | chromosome:4:164265789:164265891:1 | intergenic |
sblock9135 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.040 | no | no | 0.25/0.46 | 18/24/0.56 | 4.1 1.5 | 3.3 3.8 | 12 4 | 0 0 | 2 1 | 0 0 | 10 11 | 7 10 | 5arm 3arm | 2 2 | nd nd | 0.42 0.46 | 6 7 | 16 | 2 | 5 | 8 |
| reads | miRBase family seed | |||
| seed | -----------------------ACAUAAA------------------------------------------------------------------------ | 4 | novel | |
| seed | --------------------------------------------------------------------ACAGGAA--------------------------- | 3 | novel | |
| seed | -----------AAGGUCA------------------------------------------------------------------------------------ | 2 | novel | |
| seed | -------------------ACAGACA---------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------GUCAUAC--------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------AGGUCAU----------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------CAUACAG------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------UUACAGG----------------------------- | 1 | novel | |
| seed | ---------------------AGACAUA-------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------TACAGACATAAAATGTAAAC---------------------------------------------------------------- | 20 | - | 2 | |
| ----------------------GACATAAAATGTAAACGGA------------------------------------------------------------- | 19 | 1 | 1 | |
| ----------------------GACATAAAATGTAAACGGAA------------------------------------------------------------ | 20 | - | 2 | |
| --------------------CAGACATAAAATGTAAAC---------------------------------------------------------------- | 18 | - | 1 | |
| -----------AAGGTCATACAGACATAAAATGT-------------------------------------------------------------------- | 23 | - | 1 | |
| ----------TAAGGTCATACAGACATAA------------------------------------------------------------------------- | 19 | - | 1 | |
| -------------------------------------------------------------------TACAGGAAATGGTCATTGT---------------- | 19 | - | 1 | |
| ----------TAAGGTCATACAGACATAAAATGT-------------------------------------------------------------------- | 24 | - | 1 | |
| ---------------TCATACAGACATAAAATGT-------------------------------------------------------------------- | 19 | - | 1 | |
| -------------------------------------------------------------------TACAGGAAATGGTCATTGTGCTG------------ | 23 | - | 1 | |
| -------------GGTCATACAGACATAAAATG--------------------------------------------------------------------- | 20 | - | 1 | |
| -----------------------------------------------------------------TTTACAGGAAATGGTCATT------------------ | 19 | - | 1 | |
| -------------------------------------------------------------------TACAGGAAATGGTCATTGTGCTGG----------- | 24 | - | 1 | |
| rat | agccatacttTAAGGTCATACAGACATAAAATGTAAACGGAAcgctggccactgtgccagcatctTTTACAGGAAATGGTCATTGTGCTGGaattcttggtt | |||
| ****************************************************************************************************** | ||||
| rat | (((((....((..((.((((..(((......((((((.(((..((((((......)))))).))))))))).......)))..))))))..))....))))) | 0.980 -28.02 | ||
| rat | chromosome:4:164277048:164277149:1 | intergenic |
sblock9748 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.278 | no | no | 0.42/0.56 | 19/26/0.45 | 0.0 0.0 0.0 1.1 | 0.0 0.0 0.0 0.4 | 2 1 1 7 | 0 0 0 0 | 1 1 1 2 | 0 0 0 0 | 17 29 20 5 | -3 -8 3 11 | 5arm_loop 3arm_loop 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.32 0.38 0.32 0.35 | 4 7 5 5 | 11 | 2 | 15 | 13 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------GGAUAUA----------------------- | 5 | novel | |
| seed | ------------------GGGUCCC---------------------------------------------------------------- | 2 | novel | |
| seed | ---------------------------------------------------------------AUAACCU------------------- | 2 | novel | |
| seed | ----------------------------------------GAGAGUU------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------CCUCCUC------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------------------------------------------------TGGATATAACCTGTTCCTGTGTC-------- | 23 | 1 | 3 | |
| -----------------TGGGTCCCTAGAGGATGAGCAGTGA----------------------------------------------- | 25 | - | 2 | |
| --------------------------------------------------------------TATAACCTGTTCCTGTGTC-------- | 19 | - | 2 | |
| --------------------------------------------------TCCTCCTCTGGATATAACC-------------------- | 19 | 1 | - | |
| ----------------------------------------------------------TGGATATAACCTGTTCCTGTGTCCTT----- | 26 | - | 1 | |
| ---------------------------------------TGAGAGTTCTCTCCTCCTCTG----------------------------- | 21 | - | 1 | |
| rat | gggccaaatgctgagccTGGGTCCCTAGAGGATGAGCAGTGAGAGTTCTCTCCTCCTCTGGATATAACCTGTTCCTGTGTCCTTgggtc | |||
| ***************************************************************************************** | ||||
| rat | ((.((((((((.((((..((((..((((((((.(((.((........))))).)))))))).....))))))))..))))..)))).)) | 0.830 -28.10 | ||
| rat | chromosome:5:79250382:79250470:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK (12 loci)
sblock10107 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.26/0.47 | 18/26/0.25 | 0.0 1.5 0.0 1.0 | 0.0 1.1 0.4 0.0 | 4 8 5 6 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 7 18 9 0 | 24 6 24 30 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.58 0.26 0.39 0.62 | 4 2 4 13 | 24 | 2 | 11 | 8 |
| reads | miRBase family seed | |||
| seed | -------------------GAAAGAU--------------------------------------------------------------------------------------------- | 6 | novel | |
| seed | --------------------------------------------------------------------------------------------------CAUACCU-------------- | 5 | novel | |
| seed | --------------------------------------------------------------------------------------------GAGCUUC-------------------- | 5 | novel | |
| seed | --------CACAUGG-------------------------------------------------------------------------------------------------------- | 4 | novel | |
| seed | -----------------------------------------------------------------------------------------------------ACCUUUC----------- | 2 | novel | |
| seed | --------------------------AUCUGCA-------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------AUAUCUG---------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------TCACATGGGGCTGAAAGAT--------------------------------------------------------------------------------------------- | 19 | - | 4 | |
| -------------------------------------------------------------------------------------------------TCATACCTTTCAAATAGTGAAA | 22 | - | 4 | |
| ------------------TGAAAGATATCTGCACATCCACTTTG--------------------------------------------------------------------------- | 26 | 1 | 3 | |
| -------------------------------------------------------------------------------------------TGAGCTTCATACCTTTCAA--------- | 19 | - | 3 | |
| ----------------------------------------------------------------------------------------------------TACCTTTCAAATAGTGAAA | 19 | - | 2 | |
| -------------------------------------------------------------------------------------------TGAGCTTCATACCTTTCA---------- | 18 | - | 2 | |
| ------------------TGAAAGATATCTGCACATCCACTTT---------------------------------------------------------------------------- | 25 | - | 1 | |
| -------------------------------------------------------------------------------------------------TCATACCTTTCAAATAGTGAA- | 21 | - | 1 | |
| -----------------------GATATCTGCACATCCACTT----------------------------------------------------------------------------- | 19 | - | 1 | |
| -------------------------TATCTGCACATCCACTTTG--------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------TGAAAGATATCTGCACATCC--------------------------------------------------------------------------------- | 20 | - | 1 | |
| rat | taaggtaTCACATGGGGCTGAAAGATATCTGCACATCCACTTTGcccacagtcacaaaaaaaaaaagtgtgcttcaacgtgatgtgcagttTGAGCTTCATACCTTTCAAATAGTGAAA | |||
| *********************************************************************************************************************** | ||||
| rat | .((((((.....((..(((.(((.....((((((((.(((.(((..((((.................))))...))).)))))))))))))).)))..))))))))............. | 0.460 -31.13 | ||
| rat | chromosome:6:122565959:122566077:-1 | intergenic |
sblock10120 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.26/0.48 | 18/25/0.50 | 0.0 0.5 0.0 2.5 | 0.9 1.2 0.0 4.8 | 7 4 1 4 | 0 0 0 0 | 2 2 1 1 | 0 0 0 0 | 0 13 45 11 | 29 13 -14 2 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.41 0.25 0.20 0.14 | 5 2 4 2 | 18 | 3 | 0 | -13 |
| reads | miRBase family seed | ||||
| seed | -ACACAUU------------------------------------------------------------------------------------------ | 9 | novel | ||
| seed | ---------------------------------------------------------------GAAUUGG---------------------------- | 2 | novel | ||
| seed | ----------------------------------------------------------GCUUUGA--------------------------------- | 2 | novel | ||
| seed | ---------------CAGAAGU---------------------------------------------------------------------------- | 2 | novel | ||
| seed | ----------------------------------------------GCAGUAG--------------------------------------------- | 1 | novel | ||
| seed | --------------UCAGAAG----------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------AGAAGUA--------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| TACACATTAAGAATTCAGAAGT---------------------------------------------------------------------------- | 22 | - | - | 5 | |
| TACACATTAAGAATTCAGA------------------------------------------------------------------------------- | 19 | - | 1 | 2 | |
| --------------------------------------------------------------TGAATTGGTGACCTTTACCCCTGAC----------- | 25 | - | - | 2 | |
| --------------TCAGAAGTAAAGGTGTCCA----------------------------------------------------------------- | 19 | - | - | 2 | |
| ---------------CAGAAGTAAAGGTGTCCATTTCC------------------------------------------------------------ | 23 | - | - | 1 | |
| ---------------------------------------------------------TGCTTTGAATTGGTGACCT---------------------- | 19 | - | - | 1 | |
| ---------------------------------------------------------TGCTTTGAATTGGTGACCTTTA------------------- | 22 | - | - | 1 | |
| -------------TTCAGAAGTAAAGGTGTCCA----------------------------------------------------------------- | 20 | 1 | - | - | |
| TACACATTAAGAATTCAG-------------------------------------------------------------------------------- | 18 | - | - | 1 | |
| ---------------------------------------------AGCAGTAGATATTGCTTTGA--------------------------------- | 20 | 1 | - | - | |
| rat | TACACATTAAGAATTCAGAAGTAAAGGTGTCCAtttcctgcagaaagcagtagatattgcttTGAATTGGTGACCTTTACCCCTGACagccatcttaa | ||||
| ************************************************************************************************** | |||||
| rat | ......((((((..((((..((((((((..(((.(((......((((((((....))))))))))).)))..))))))))..))))......)))))) | 1.000 -27.60 | |||
| rat | chromosome:6:122569514:122569611:-1 | intergenic |
sblock12255 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.42/0.59 | 18/25/0.54 | 0.5 0.0 0.0 8.0 | 1.8 0.0 0.0 6.0 | 8 1 1 3 | 0 0 0 0 | 1 1 1 2 | 0 0 0 0 | 7 18 43 24 | 20 16 -5 2 | 5arm 5arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.14 0.11 0.36 0.17 | 1 1 4 1 | 13 | 3 | 0 | 20 |
| reads | miRBase family seed | ||||
| seed | --------AGCUGCU--------------------------------------------------------------------------------------------------------- | 7 | novel | ||
| seed | ------------GCUGUAU----------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------GGAUGUC-------------------------------------------------- | 1 | novel | ||
| seed | -------------------UCACCAU---------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------------------GCCUACC---------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------------AGGACCA------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------------------------AGAAGCA--------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T5S1 | T5S2 | |||
| -------TAGCTGCTGTATTCACCATG--------------------------------------------------------------------------------------------- | 20 | - | 3 | - | |
| -------TAGCTGCTGTATTCACCAT---------------------------------------------------------------------------------------------- | 19 | - | 2 | - | |
| ------------------------------------------------------------------------------TGCCTACCTTCACCAAGG------------------------ | 18 | - | 1 | - | |
| -----------TGCTGTATTCACCATGCTGAG---------------------------------------------------------------------------------------- | 21 | - | 1 | - | |
| -------------------------------------------------------GAGAAGCAGGATGTCCAGGACC------------------------------------------- | 22 | - | 1 | - | |
| -------TAGCTGCTGTATTCACCATGCTGAG---------------------------------------------------------------------------------------- | 25 | - | 1 | - | |
| --------------------------------------------------------------AGGATGTCCAGGACCATGCCTACC---------------------------------- | 24 | - | - | 1 | |
| -------TAGCTGCTGTATTCACCA----------------------------------------------------------------------------------------------- | 18 | - | 1 | - | |
| ------------------TTCACCATGCTGAGGGAG------------------------------------------------------------------------------------ | 18 | 1 | - | - | |
| ----------------------------------------------------------------------CAGGACCATGCCTACCTTCACCAA-------------------------- | 24 | - | 1 | - | |
| rat | agcacctTAGCTGCTGTATTCACCATGCTGAGGGAGgctgtggacatcctgcccaGAGAAGCAGGATGTCCAGGACCATGCCTACCTTCACCAAGGtgagtgctctgtgggaggagggtc | ||||
| ************************************************************************************************************************ | |||||
| rat | .((.((((..((((.(((((((((.((.((((((((((((((((((((((((........))))))))))))....)).)))).)))))).)).)))))))))...))))...)))))). | 1.000 -61.20 | |||
| rat | chromosome:9:90633713:90633832:-1 | intergenic |
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