other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK (12 loci)
sblock12374 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.45/0.58 | 19/25/0.44 | 0.0 1.1 2.2 | 0.0 1.8 2.0 | 1 11 4 | 0 0 0 | 1 1 3 | 0 0 0 | 16 20 0 | 13 17 28 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.29 0.38 0.36 | 2 4 4 | 18 | 3 | 4 | -2 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------------------UGUCCAG------------------------------------ | 7 | novel | ||
| seed | -----------------------------------------------------------------------------CCAGAGC--------------------------------- | 5 | novel | ||
| seed | --------------------------------------------------------------------------------------------AUCACAG------------------ | 2 | novel | ||
| seed | -----------------------------------------------------------------------CCUUGUC--------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------------------------GAGCUUU------------------------- | 1 | novel | ||
| seed | -----------------GCUAGCU--------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------------------------CACAGAG---------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -------------------------------------------------------------------------TTGTCCAGAGCTGAGCTTT------------------------- | 19 | - | - | 7 | |
| ----------------------------------------------------------------------------TCCAGAGCTGAGCTTTATCAC-------------------- | 21 | - | - | 4 | |
| -------------------------------------------------------------------------------------------TATCACAGAGGTCTTCCCG------- | 19 | - | - | 2 | |
| ---------------------------------------------------------------------------------------------TCACAGAGGTCTTCCCGCTTACCA | 24 | 1 | - | - | |
| ----------------------------------------------------------------------------TCCAGAGCTGAGCTTTATCACA------------------- | 22 | - | - | 1 | |
| ------------------------------------------------------------------------------------TGAGCTTTATCACAGAGGTCTTCCC-------- | 25 | - | 1 | - | |
| ----------------TGCTAGCTCTCCTGTGGTTGGGAG----------------------------------------------------------------------------- | 24 | 1 | - | - | |
| ----------------------------------------------------------------------TCCTTGTCCAGAGCTGAGCT--------------------------- | 20 | - | - | 1 | |
| rat | ggaaggaccaacagcgtgctagctctcctgtggttgggagccggaagtggggcagtgcctttggtttggctccTTGTCCAGAGCTGAGCTTTATCACagaggtcttcccgcttacca | ||||
| ********************************************************************************************************************* | |||||
| rat | ((.((((((......(((..(((((..((.(((..((((((((((...(((((...)))))...))))))))))...))).))..)))))....)))...)))))).))........ | 0.910 -49.70 | |||
| rat | chromosome:9:7095059:7095175:1 | intergenic |
sblock2835 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.35/0.58 | 18/24/0.44 | 0.0 0.3 3.5 0.0 2.0 | 1.5 0.3 2.3 0.0 0.9 | 2 3 11 4 7 | 0 0 0 0 0 | 2 1 1 1 1 | 0 0 0 0 0 | 1 17 26 17 5 | 25 12 1 21 26 | 5arm 5arm 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.25 0.05 0.38 0.47 0.14 | 3 1 7 7 2 | 27 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------UUGACUG------------------------------------- | 4 | novel | |
| seed | -------------------------------------------------------------------------------GGGCUUG---------------------------- | 4 | novel | |
| seed | -------------------------------------------------------------------------------------GGAUUCU---------------------- | 3 | novel | |
| seed | -------------------------------------------------------------------GGUUUGA---------------------------------------- | 3 | novel | |
| seed | --UCUUUUU--------------------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------------------------------------------GUCUUUC------------------------------------------------ | 2 | novel | |
| seed | -------------------------------------------------------------------------------------------UGUGAGC---------------- | 2 | novel | |
| seed | ------------------GGGUAGC----------------------------------------------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------------------------------------UGGAUUC----------------------- | 2 | novel | |
| seed | --------------------------------------------------------------------GUUUGAC--------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------UCUGGUU------------------------------------------- | 1 | novel | |
| seed | -------------------GGUAGCA---------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| ------------------------------------------------------------------------------TGGGCTTGGATTCTGTGAG----------------- | 19 | - | 4 | |
| ---------------------------------------------------------------------TTTGACTGATGGGCTTGGA-------------------------- | 19 | - | 3 | |
| ------------------------------------------------------------------------------------TGGATTCTGTGAGCCTTTGCTC-------- | 22 | - | 3 | |
| ------------------------------------------------------------------------------------------CTGTGAGCCTTTGCTCGGT----- | 19 | - | 2 | |
| ------------------------------------------------------------------TGGTTTGACTGATGGGCTTG---------------------------- | 20 | - | 2 | |
| -----------------------------------------------------------------------------------TTGGATTCTGTGAGCCTTTGCTC-------- | 23 | - | 2 | |
| -----------------AGGGTAGCAGAGTTGGTTG------------------------------------------------------------------------------ | 19 | - | 2 | |
| ----------------------------------------------------------TGTCTTTCTGGTTTGACTGATGGG-------------------------------- | 24 | - | 2 | |
| ---------------------------------------------------------------------TTTGACTGATGGGCTTGG--------------------------- | 18 | - | 1 | |
| ------------------GGGTAGCAGAGTTGGTTGG----------------------------------------------------------------------------- | 19 | - | 1 | |
| ---------------------------------------------------------------TTCTGGTTTGACTGATGGG-------------------------------- | 19 | - | 1 | |
| -TTCTTTTTGGGTTTTAAGGG--------------------------------------------------------------------------------------------- | 20 | 1 | - | |
| -------------------------------------------------------------------GGTTTGACTGATGGGCTTG---------------------------- | 19 | - | 1 | |
| -TTCTTTTTGGGTTTTAAGGGTAG------------------------------------------------------------------------------------------ | 23 | - | 1 | |
| ------------------------------------------------------------------TGGTTTGACTGATGGGCTTGGA-------------------------- | 22 | - | 1 | |
| rat | attctttttgggttttaAGGGTAGCAGAGTTGGTTGgcaagaagggcaggtttggggcTGTCTTTCTGGTTTGACTGATGGGCTTGGATTCTGTGAGCCTTTGCTCGGTtggga | |||
| ****************************************************************************************************************** | ||||
| rat | .((((..((((((...((((((.(((((((((((((((.((((((((((........)))))))))).))).))))..........))))))))..))))))))))))..)))) | 0.730 -36.60 | ||
| rat | chromosome:10:92626275:92626388:1 | intergenic |
sblock3646 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.47/0.58 | 18/24/0.61 | 1.0 1.5 0.0 0.0 1.2 | 0.8 4.0 0.0 0.4 3.2 | 5 2 1 5 5 | 0 0 0 0 0 | 3 1 1 1 3 | 0 0 0 0 0 | 0 10 34 10 0 | 27 12 5 28 37 | 5arm 5arm 3arm 3arm 3arm | 2 2 2 2 2 | nd nd nd nd nd | 0.20 0.26 0.33 0.50 0.33 | 2 3 6 4 4 | 18 | 5 | -3 | -8 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------------------------------------------CGGCCUU------------------------ | 5 | novel | ||||
| seed | ---------------------------------------------------------------------------------------------AGUCAAG-------------- | 3 | novel | ||||
| seed | ----CAGGCUU------------------------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | --CUCAGGC--------------------------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | -UCUCAGG---------------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------UCUGUCC------------------------------------------------------------------------------------------------ | 1 | novel | ||||
| seed | ------------------------------------------------------------CCUGAGA----------------------------------------------- | 1 | novel | ||||
| seed | --------------GUCCAGG--------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------------------------------------------------UCAAGAC------------ | 1 | novel | ||||
| seed | --------------------------------------------------------------------------------------------GAGUCAA--------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T5S1 | |||
| ----------------------------------------------------------------------------------TCGGCCTTAAGAGTCAAGACTG---------- | 22 | - | - | - | - | 3 | |
| -TCTCAGGCTTTCTGTCCAG---------------------------------------------------------------------------------------------- | 19 | - | - | - | - | 2 | |
| ----------------------------------------------------------------------------------TCGGCCTTAAGAGTCAAGACT----------- | 21 | - | - | - | - | 2 | |
| ---TCAGGCTTTCTGTCCAGGC-------------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | 1 | |
| --------------------------------------------------------------------------------------------GAGTCAAGACTGCTTGGGAAAC | 22 | 1 | - | - | - | 1 | |
| -------------------------------------------------------------------------------------------AGAGTCAAGACTGCTTGG----- | 18 | - | - | - | - | 1 | |
| ----------------------------------------------------------------------------------------------GTCAAGACTGCTTGGGAA-- | 18 | - | - | - | - | 1 | |
| --------------------------------------------------------------------------------------------GAGTCAAGACTGCTTGGGAA-- | 20 | - | - | - | 1 | - | |
| TTCTCAGGCTTTCTGTCCAG---------------------------------------------------------------------------------------------- | 20 | - | 1 | - | - | - | |
| ----------TTCTGTCCAGGCAATGACA------------------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -------------TGTCCAGGCAATGACATGTGGGTG----------------------------------------------------------------------------- | 24 | - | - | - | - | 1 | |
| -----------------------------------------------------------TCCTGAGAGAACCCACTGTGT---------------------------------- | 21 | 1 | - | - | - | - | |
| rat | TTCTCAGGCTTTCTGTCCAGGCAATGACATGTGGGTGccaagggttgggagaatctctaTCCTGAGAGAACCCACTGTGTtcTCGGCCTTAAGAGTCAAGACTGCTTGGGAAAC | ||||||
| ****************************************************************************************************************** | |||||||
| rat | (((((((((..(((.((.((((...(((((((((((....(((((.(((.....))).)))))......)))))).)))))....))))...))....)))..))))))))).. | 0.950 -43.20 | |||||
| rat | chromosome:12:44300409:44300522:1 | intergenic |
sblock6751 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.47/0.73 | 19/25/0.58 | 9.2 0.0 0.0 | 11.0 0.0 0.0 | 23 1 7 | 0 0 0 | 3 1 1 | 0 0 0 | 1 23 30 | 20 12 6 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.33 0.23 0.26 | 7 2 2 | 31 | 3 | -12 | -18 |
| reads | miRBase family seed | ||||
| seed | ------------GAGAAUC--------------------------------------------------------------------------------------------------- | 11 | novel | ||
| seed | ----------------------------------------------------------------------GGGUAGC----------------------------------------- | 7 | novel | ||
| seed | ---------------AAUCAGG------------------------------------------------------------------------------------------------ | 4 | novel | ||
| seed | --GAGGGCA------------------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ------GCACUUG--------------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -------------AGAAUCA-------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------CAGGAAC--------------------------------------------------------------------------------------------- | 1 | miR-873 | ||
| seed | -----------UGAGAAU---------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------CCCCAGG--------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------CACUUGA-------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ---------------------------------------------------------------------TGGGTAGCCAGAAAGGTTG------------------------------ | 19 | - | - | 7 | |
| -----------TGAGAATCAGGAACCCCAGGGACC----------------------------------------------------------------------------------- | 24 | 1 | - | 2 | |
| -----------TGAGAATCAGGAACCCCAGGGAC------------------------------------------------------------------------------------ | 23 | - | - | 2 | |
| --------------GAATCAGGAACCCCAGGGACC----------------------------------------------------------------------------------- | 21 | - | - | 2 | |
| -----------TGAGAATCAGGAACCCCAG---------------------------------------------------------------------------------------- | 19 | - | - | 2 | |
| -----------TGAGAATCAGGAACCCCAGGGA------------------------------------------------------------------------------------- | 22 | - | - | 2 | |
| -----------TGAGAATCAGGAACCCCAGGGACCT---------------------------------------------------------------------------------- | 25 | 1 | - | 1 | |
| -AGAGGGCACTTGAGAATCAG------------------------------------------------------------------------------------------------- | 20 | - | - | 2 | |
| -----------------TCAGGAACCCCAGGGACCT---------------------------------------------------------------------------------- | 19 | 1 | - | - | |
| -----GGCACTTGAGAATCAGGAACC-------------------------------------------------------------------------------------------- | 21 | - | - | 1 | |
| --------------GAATCAGGAACCCCAGGGAC------------------------------------------------------------------------------------ | 20 | - | - | 1 | |
| -----------------------ACCCCAGGGACCTGCCTGGCAG------------------------------------------------------------------------- | 22 | - | - | 1 | |
| --------------GAATCAGGAACCCCAGGGACCTG--------------------------------------------------------------------------------- | 23 | - | 1 | - | |
| ------------GAGAATCAGGAACCCCAGGGACCT---------------------------------------------------------------------------------- | 24 | - | - | 1 | |
| -----GGCACTTGAGAATCAGGAAC--------------------------------------------------------------------------------------------- | 20 | - | - | 1 | |
| ----------TTGAGAATCAGGAACCCCA----------------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| ------GCACTTGAGAATCAGGAACCCCA----------------------------------------------------------------------------------------- | 23 | - | - | 1 | |
| rat | gagagggcacttgagaatcaggaaccccagggacctgcctggcagcccagagccagcccaccagctctcTGGGTAGCCAGAAAGGTTGgcttggcatagagtctcaaaggtcacactc | ||||
| ********************************************************************************************************************** | |||||
| rat | (((..(((..((((((.((.......((((((((((..(((((.((((((((..(((......))))))))))).)))))..)))))..)))))....)).))))))..)))...))) | 0.950 -51.20 | |||
| rat | chromosome:20:5520562:5520679:-1 | intergenic |
sblock7235 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.47/0.65 | 19/23/0.27 | 0.0 0.0 2.5 | 0.0 0.0 0.5 | 6 1 2 | 0 0 0 | 2 1 2 | 0 0 0 | 6 15 0 | 3 -7 12 | 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.21 0.30 0.48 | 3 6 7 | 11 | 3 | 8 | 7 |
| reads | miRBase family seed | ||||
| seed | -------CCACAUG-------------------------------------------------------- | 8 | novel | ||
| seed | ----------------GCUACCA----------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------CUGCAGU----------- | 1 | miR-17/20b | ||
| seed | -----------------------------------------------CAGCUCU---------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T4S2 | T5S1 | |||
| ------TCCACATGCTGCTACCACG--------------------------------------------- | 19 | - | 1 | 6 | |
| ---------------TGCTACCACGGCCCAAAGAG----------------------------------- | 20 | - | - | 1 | |
| ------TCCACATGCTGCTACCACGGCCC----------------------------------------- | 23 | - | - | 1 | |
| ---------------------------------------------------TCTGCAGTCTTTGCCACAA | 19 | 1 | - | - | |
| ----------------------------------------------CCAGCTCTGCAGTCTTTGCCACA- | 23 | - | - | 1 | |
| rat | ggaggcTCCACATGCTGCTACCACGgcccaaagaggctgtggtcggccagctctgcagtctttgccacaa | ||||
| ********************************************************************** | |||||
| rat | (((((((.((...(((((((((((((((......))))))))).))).)))..)).)))))))....... | 1.000 -31.00 | |||
| rat | chromosome:20:5564849:5564918:1 | intergenic |
sblock7701 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.16/0.42 | 18/25/0.34 | 0.0 0.0 1.7 | 0.0 0.0 0.2 | 2 1 15 | 0 0 0 | 1 1 4 | 0 0 0 | 10 25 10 | 11 -5 4 | 5arm 3arm_loop 3arm | 2 2 2 | nd nd nd | 0.16 0.26 0.24 | 1 4 4 | 29 | 4 | -5 | 2 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------GUGAUAG--------------------------- | 13 | novel | |||
| seed | ---------------------------------------------------------GAUAGAA------------------------- | 5 | novel | |||
| seed | ------------------------------------------------------------AGAAUUU---------------------- | 5 | novel | |||
| seed | -----------UAUCAUU----------------------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------------CCCUUGU-------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------AUAGAAU------------------------ | 1 | novel | |||
| seed | ----------------------------------------------GUCUCCC------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T4S1 | T5S1 | T5S2 | |||
| ------------------------------------------------------TGTGATAGAATTTTAACTGGTACCA---------- | 25 | - | 1 | 7 | - | |
| --------------------------------------------------------TGATAGAATTTTAACTGGTACCA---------- | 23 | - | - | 5 | - | |
| -----------------------------------------------------------TAGAATTTTAACTGGTACC----------- | 19 | - | - | 3 | - | |
| ------------------------------------------------------TGTGATAGAATTTTAACTGG--------------- | 20 | - | - | 2 | - | |
| ------------------------------------------------------TGTGATAGAATTTTAACTG---------------- | 19 | 1 | - | 1 | - | |
| ----------TTATCATTTAAATTTCTGA------------------------------------------------------------ | 19 | - | - | 2 | - | |
| ---------------------------------------------------------GATAGAATTTTAACTGGTAC------------ | 20 | - | - | 1 | - | |
| -------------------------------------------------TCCCTTGTGATAGAATTTTAACTGG--------------- | 25 | - | - | 1 | - | |
| ---------------------------------------------TGTCTCCCTTGTGATAGAA------------------------- | 19 | - | - | 1 | - | |
| -----------------------------------------------------------TAGAATTTTAACTGGTACCA---------- | 20 | - | - | 1 | - | |
| -----------------------------------------------------------TAGAATTTTAACTGGTAC------------ | 18 | - | - | 1 | - | |
| ------------------------------------------------------TGTGATAGAATTTTAACT----------------- | 18 | - | - | 1 | - | |
| -------------------------------------------------TCCCTTGTGATAGAATTTTAACT----------------- | 23 | - | - | - | 1 | |
| rat | tgcagagtttttatcatttaaatttctgatttgacgagggtgttctgtctccctTGTGATAGAATTTTAACTGGTACCAtagtctgcag | |||||
| ***************************************************************************************** | ||||||
| rat | ((((((.....(((((.(((((.((((.(((..(((((((..........)))))))))))))).))))).)))))......)))))). | 1.000 -25.40 | ||||
| rat | chromosome:3:141688158:141688246:-1 | intergenic |
sblock8015 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.32/0.53 | 18/23/0.31 | 0.8 0.0 1.3 | 0.8 0.0 3.0 | 8 2 3 | 0 0 0 | 2 1 2 | 0 0 0 | 30 30 13 | 5 3 15 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.39 0.21 0.32 | 5 2 2 | 16 | 3 | -2 | 3 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------CAAGUAU------------------------------------------------------------------------ | 7 | novel | ||
| seed | -------------------------------CAUCAAG--------------------------------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------------AGAUUAU----------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------GCUUCUG----------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------------------UAUGGAU------------------------- | 1 | novel | ||
| seed | ----------------------------ACUCAUC------------------------------------------------------------------------------ | 1 | novel | ||
| seed | -----------------------------CUCAUCA----------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ---------------------------------TCAAGTATGGATTGGGAA-------------------------------------------------------------- | 18 | 1 | - | 4 | |
| ----------------------------------------------------------------GGCTTCTGGGGCTAGATTA------------------------------ | 19 | - | - | 2 | |
| ---------------------------------TCAAGTATGGATTGGGAAG------------------------------------------------------------- | 19 | - | - | 2 | |
| ------------------------------TCATCAAGTATGGATTGGGAAGG------------------------------------------------------------ | 23 | - | - | 2 | |
| ----------------------------------------------------------------------------TAGATTATGGATAGGTTTGGGGA-------------- | 23 | - | - | 1 | |
| ----------------------------------------------------------------------------TAGATTATGGATAGGTTTG------------------ | 19 | - | 1 | - | |
| --------------------------------------------------------------------------------TTATGGATAGGTTTGGGGAA------------- | 20 | - | - | 1 | |
| ---------------------------CACTCATCAAGTATGGATTG------------------------------------------------------------------ | 20 | - | - | 1 | |
| ----------------------------ACTCATCAAGTATGGATTG------------------------------------------------------------------ | 19 | - | - | 1 | |
| rat | caccagtagctatgtcccatccctttccacTCATCAAGTATGGATTGGGAAGGccatgtgtcatGGCTTCTGGGGCTAGATTAtggataggtttggggaagggtctggggtgg | ||||
| ***************************************************************************************************************** | |||||
| rat | ((((..(((((...(((((..(((.((((...(((.(((.....((.((((.((((((...)))))))))).))))).)))..)))).)))..)))))...)).))).)))). | 0.940 -42.20 | |||
| rat | chromosome:3:76956414:76956526:1 | intergenic |
sblock8022 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.42/0.58 | 19/23/0.30 | 0.0 1.5 0.0 0.0 1.3 | 0.0 3.0 0.0 0.0 2.0 | 1 4 1 1 3 | 0 0 0 0 0 | 1 2 1 1 1 | 0 0 0 0 0 | 10 23 37 39 19 | 24 5 -3 1 17 | 5arm 5arm 5arm_loop 3arm 3arm | 1 1 2 2 2 | nd nd nd nd nd | 0.26 0.33 0.32 0.26 0.47 | 2 5 4 3 7 | 10 | 3 | 4 | 1 |
| reads | miRBase family seed | ||||
| seed | --------------------------GAGGCUU--------------------------------------------------------------------------------------- | 3 | miR-879 | ||
| seed | ---------------------------------------------------------------------------------ACAAACA-------------------------------- | 2 | novel | ||
| seed | ------------------------GUGAGGC----------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------AAGGUCA--------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------------------GGACAAA---------------------------------- | 1 | novel | ||
| seed | -----------ACCCAGG------------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ---------------------------------------------------------------UAGGAUU-------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| -------------------------TGAGGCTTCGTTTAAGGTCAG-------------------------------------------------------------------------- | 21 | - | - | 1 | |
| -------------------------TGAGGCTTCGTTTAAGGTC---------------------------------------------------------------------------- | 19 | - | - | 1 | |
| -------------------------------------TAAGGTCAGTGCTGAGAAA---------------------------------------------------------------- | 19 | 1 | - | - | |
| --------------------------------------------------------------TTAGGATTGGACAGTTTGG--------------------------------------- | 19 | - | - | 1 | |
| ------------------------------------------------------------------------------TGGACAAACACACTAGCAC----------------------- | 19 | - | - | 1 | |
| -------------------------TGAGGCTTCGTTTAAGGTCAGTG------------------------------------------------------------------------ | 23 | - | - | 1 | |
| --------------------------------------------------------------------------------GACAAACACACTAGCACGCTC------------------- | 21 | - | - | 1 | |
| --------------------------------------------------------------------------------GACAAACACACTAGCACGC--------------------- | 19 | - | - | 1 | |
| -----------------------TGTGAGGCTTCGTTTAAGG------------------------------------------------------------------------------ | 19 | - | 1 | - | |
| ----------CACCCAGGACAGTTGTGAG------------------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| rat | agccccctccCACCCAGGACAGTTGTGAGGCTTCGTTTAAGGTCAGTGCTGAGAAAagctccTTAGGATTGGACAGTTTGGACAAACACACTAGCACGCTCctgggtgggggaatggggt | ||||
| ************************************************************************************************************************ | |||||
| rat | .((((((((((((((((((..((.((.((.....((((((.((((((.(((((........))))).)))).))...)))))).......)).))))..)))))))))))))...))))) | 0.650 -51.00 | |||
| rat | chromosome:3:76958225:76958344:1 | intergenic |
sblock9301 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.63/0.75 | 18/23/0.45 | 0.0 0.0 3.2 2.0 | 0.0 0.0 3.5 2.3 | 1 1 15 3 | 0 0 0 0 | 1 1 6 3 | 0 0 0 0 | 36 34 11 2 | -1 -2 8 25 | 5arm_loop 3arm_loop 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.30 0.22 0.26 0.10 | 3 1 5 1 | 20 | 7 | 11 | 16 |
| reads | miRBase family seed | ||||||||
| seed | -------------------------------------------------------------------------------CGAGUCA------------------------ | 4 | novel | ||||||
| seed | ---------------------------------------------------------------------------CGCCCGA---------------------------- | 2 | novel | ||||||
| seed | ---------------------------------------------------------------------CCGCCUC---------------------------------- | 2 | novel | ||||||
| seed | -----------------------------------------------------------------------------------------UCCUUGC-------------- | 2 | novel | ||||||
| seed | --------------------------------------------------------------------------UCGCCCG----------------------------- | 2 | novel | ||||||
| seed | ------------------------------------------------------------------------------CCGAGUC------------------------- | 2 | novel | ||||||
| seed | -----------------------------------------------------------------------GCCUCGC-------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------AGCCGCG------------------------------------------------------------------ | 1 | novel | ||||||
| seed | -----------------------------------------------------------UGUUGCU-------------------------------------------- | 1 | novel | ||||||
| seed | --------------------------------------------------------------------------------------UGGUCCU----------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------------------------CUCGCCC------------------------------ | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------------------AGUCAUG---------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T5S1 | |||
| ------------------------------------------------------------------------------CCGAGTCATGGTCCTTGCCC------------ | 20 | - | - | - | - | 2 | - | - | |
| -----------------------------------------------------------------------------CCCGAGTCATGGTCCTTGCCCC----------- | 22 | - | - | - | - | 1 | - | 1 | |
| ------------------------------------------------------------------------------CCGAGTCATGGTCCTTGCC------------- | 19 | - | - | - | 2 | - | - | - | |
| --------------------------------------------------------------------------TCGCCCGAGTCATGGTCCTTGCC------------- | 23 | - | - | - | - | 2 | - | - | |
| ----------------------------------------------------------------------------------------GTCCTTGCCCCGAACCTTCC-- | 20 | - | - | 1 | - | - | - | - | |
| ----------------------------------------------------------------------------------------GTCCTTGCCCCGAACCTTC--- | 19 | 1 | - | - | - | - | - | - | |
| -------------------------------------------------------------------------CTCGCCCGAGTCATGGTCC------------------ | 19 | - | 1 | - | - | - | - | - | |
| --------------------------------------------------------------------GCCGCCTCGCCCGAGTCATG---------------------- | 20 | - | - | - | 1 | - | - | - | |
| -------------------------------------------------------------------------------------ATGGTCCTTGCCCCGAACC------ | 19 | - | - | - | - | 1 | - | - | |
| -------------------------------------------------------------------------CTCGCCCGAGTCATGGTC------------------- | 18 | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------GCCGCCTCGCCCGAGTCAT----------------------- | 19 | - | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------CCTCGCCCGAGTCATGGTC------------------- | 19 | - | - | 1 | - | - | - | - | |
| ------------------------------------TAGCCGCGGTGGCCAGCGCT------------------------------------------------------ | 20 | - | - | - | - | 1 | - | - | |
| ----------------------------------------------------------TTGTTGCTGCGCCGCCTC---------------------------------- | 18 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------CGCCTCGCCCGAGTCATGG--------------------- | 19 | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------------------------------GAGTCATGGTCCTTGCCCC----------- | 19 | - | - | - | - | 1 | - | - | |
| rat | tggacgggtgcggggcggggcctcgggtaacaacacTAGCCGCGGTGGCCAGCGCTatTTGTTGCTGCGCCGCCTCGCCCGAGTCATGGTCCTTGCCCCGAACCTTCCag | ||||||||
| ************************************************************************************************************** | |||||||||
| rat | ((((.((((.(((((((((((((((((.............((.((((((((((((.....)).)))).)))))).))))))).....)))))).)))))).)))))))). | 0.970 -59.01 | |||||||
| rat | chromosome:5:49547341:49547450:-1 | intergenic ## {SimpF: 1 Eponine,oe = 0.75 -1 CpG} |
novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH (12 loci)
block2153288 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.709 | no | no | 0.47/0.61 | 18/26/0.64 | 0.0 0.0 0.0 1.5 | 0.0 0.0 1.9 3.0 | 8 16 8 2 | 0 0 0 0 | 1 3 2 1 | 0 0 0 0 | 37 49 35 24 | -5 -19 0 10 | 5arm_loop_3arm 3arm_loop 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.47 0.52 0.27 0.30 | 6 6 4 4 | 42 | 4 | 1 | 0 |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------GGAAGAA------------------------------------------------------------ | 20 | novel | |||
| seed | --------------------------------------UCGGCAG------------------------------------------------------------------------ | 9 | novel | |||
| seed | ----------------------------------------------------------GCUAGCC---------------------------------------------------- | 8 | novel | |||
| seed | ---------------------------------------------------GAAGAAU----------------------------------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------AAGAAUG---------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------------GAUAGCC------------------------------------------ | 1 | novel | |||
| seed | -----------------------------------------------------------------------AGCCCCA--------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T5S1 | T5S2 | |||
| -------------------------------------------------TGGAAGAATGCTAGCCTGTGA----------------------------------------------- | 21 | 1 | - | 16 | 1 | |
| -------------------------------------GTCGGCAGCAAGTGGAAGA------------------------------------------------------------- | 19 | - | - | 8 | - | |
| ---------------------------------------------------------TGCTAGCCTGTGATAGCCC----------------------------------------- | 19 | - | - | 3 | - | |
| --------------------------------------------------GGAAGAATGCTAGCCTGTGA----------------------------------------------- | 20 | - | - | 2 | - | |
| -------------------------------------------------TGGAAGAATGCTAGCCTGTG------------------------------------------------ | 20 | 1 | - | - | - | |
| ---------------------------------------------------GAAGAATGCTAGCCTGTGA----------------------------------------------- | 19 | - | - | 1 | - | |
| -------------------------------------GTCGGCAGCAAGTGGAAGAATGCT-------------------------------------------------------- | 24 | - | - | 1 | - | |
| ---------------------------------------------------------TGCTAGCCTGTGATAGCC------------------------------------------ | 18 | - | - | 1 | - | |
| ---------------------------------------------------------TGCTAGCCTGTGATAGCCCC---------------------------------------- | 20 | - | - | 1 | - | |
| -------------------------------------------------TGGAAGAATGCTAGCCTGTGATAGCC------------------------------------------ | 26 | - | - | 1 | - | |
| ----------------------------------------------------------------------TAGCCCCAGGTCTTGGATTCTGC------------------------ | 23 | - | - | 1 | - | |
| ---------------------------------------------------------TGCTAGCCTGTGATAGCCCCAG-------------------------------------- | 22 | - | - | 1 | - | |
| ---------------------------------------------------------TGCTAGCCTGTGATAGCCCCAGG------------------------------------- | 23 | - | 1 | - | - | |
| -------------------------------------------------------------------TGATAGCCCCAGGTCTTGGA------------------------------ | 20 | - | - | 1 | - | |
| ---------------------------------------------------------TGCTAGCCTGTGATAGCCCCAGGTC----------------------------------- | 25 | - | - | 1 | - | |
| rat | cagtggggatggcctgacagagtgtaccagtttggagGTCGGCAGCAAGTGGAAGAATGCTAGCCTGTGAtagccccaggtcttggattctgcgccttgactcaagctgtttaaact | |||||
| ********************************************************************************************************************* | ||||||
| rat | .(((..(((((((.(((((..((((((((((((((.(((..(((((.((((......)))).)).)))....)))))))).)).))....)))))..))..))).)))))))..))) | 0.650 -31.60 | ||||
| rat | chromosome:7:116622767:116622883:-1 | intergenic |
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