other hairpins
novel_lenNOK_cloningOK_shortStem_randfoldOK_nonpairedHIGH (12 loci)
block2378375 [novel_lenNOK_cloningOK_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.33/0.37 | 18/19/0.00 | 0.0 | 0.0 | 24 | 0 | 9 | 0 | 1 | 25 | 3arm | 1 | nd | 0.32 | 3 | 45 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | -------------------------------------------------------------------------------------AACAGUG------------ | 37 | novel | ||||||||
| seed | --------------------------------------------------------------------------------------ACAGUGU----------- | 8 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------------------CAACAGTGTTTGAAAGGAA- | 19 | 3 | 7 | 12 | 5 | 2 | 2 | 3 | 1 | 2 | |
| -------------------------------------------------------------------------------------AACAGTGTTTGAAAGGAA- | 18 | - | - | 1 | 3 | 1 | 1 | 1 | - | 1 | |
| rat | tttcctgaaggcattgagactgatgttctctcaaattaattaagcagctatgcaaacccagcagctttaattaaagagaaatacCAACAGTGTTTGAAAGGAAa | ||||||||||
| ******************************************************************************************************** | |||||||||||
| rat | .(((((..((((((((.........((((((....((((((((((.(((..........))).)))).)))))))))))).......))))))))...))))). | 0.940 -26.39 | |||||||||
| rat | chromosome:8:13439796:13439899:1 | intergenic |
block2550656 [novel_lenNOK_cloningOK_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.21/0.37 | 19/25/0.30 | 0.0 0.3 | 0.0 0.6 | 1 7 | 0 0 | 1 3 | 0 0 | 13 2 | 22 31 | 3arm 3arm | 4 5 | nd nd | 0.37 0.40 | 3 3 | 10 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------------------------------GCAUAUU--------------- | 5 | novel | |||
| seed | ---------------------------------------------------------------------------------------CAUAUUU-------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------------------------GUUUGCA------------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------------------GCCGUGU------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T4S2 | T5S1 | |||
| -------------------------------------------------------------------------------------TGCATATTTTACTTTACAT---- | 19 | - | - | - | 5 | |
| --------------------------------------------------------------------------------------GCATATTTTACTTTACATTG-- | 20 | - | - | - | 2 | |
| ----------------------------------------------------------------------------TGCCGTGTTTGCATATTTT------------- | 19 | - | - | 1 | - | |
| ---------------------------------------------------------------------------------TGTTTGCATATTTTACTTTACATTG-- | 25 | 1 | - | - | - | |
| ---------------------------------------------------------------------------------TGTTTGCATATTTTACTTTACA----- | 22 | - | 1 | - | - | |
| rat | tgattttgttgggtcatatattagcctggctggccttggagattttagtcagttctgttgtctctgcctcaggctttgccgtgttTGCATATTTTACTTTACATTGtt | |||||
| ************************************************************************************************************ | ||||||
| rat | .(((..(((..(((...((((.(((.((((.((((((((((((..(((......)))..)))))))....)))))..)))).)))...))))...)))..)))..))) | 0.780 -29.60 | ||||
| rat | chromosome:9:105065490:105065597:-1 | intergenic |
block2814215 [novel_lenNOK_cloningOK_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.44/0.47 | 18/20/0.09 | 0.0 | 0.1 | 21 | 0 | 8 | 0 | 0 | 26 | 5arm | 1 | nd | 0.32 | 3 | 23 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -CAAGGUU-------------------------------------------------------------------------------------------- | 23 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| CCAAGGTTAATGACAGGTC--------------------------------------------------------------------------------- | 19 | 6 | 2 | 3 | - | 4 | 2 | 2 | - | |
| CCAAGGTTAATGACAGGT---------------------------------------------------------------------------------- | 18 | 2 | - | - | - | - | - | - | - | |
| CCAAGGTTAATGACAGGTCT-------------------------------------------------------------------------------- | 20 | - | - | - | 1 | - | - | - | 1 | |
| rat | CCAAGGTTAATGACAGGTCtttcagagtggctttattgctttcaaaagggccagttggaagcaaaagaagccattttccactaggatatcattgtattgc | |||||||||
| **************************************************************************************************** | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056912 ENSRNOG00000014245 RGD1563486_predicted | |||||||||
| rat | .(((...((((((...(((((..(((((((((((.((((((((((.........))))))))))..))))))))))).....))))).))))))..))). | 0.980 -30.60 | ||||||||
| rat | chromosome:X:133416511:133416610:-1 | Same_strand|Intronic_coding|ENSRNOT00000056912|ENSRNOG00000014245 ## Same_strand|Boundary_non-coding|ENSRNOT00000019105|ENSRNOG00000014245 ## ENSRNOG00000014245|protein_coding|RGD1563486_predicted| |
novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH (12 loci)
sblock1255 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.227 | no | no | 0.21/0.40 | 19/23/0.38 | 0.8 0.0 0.0 0.0 | 0.8 0.0 0.0 0.0 | 4 2 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 7 40 35 0 | 24 -10 6 40 | 5arm 5arm_loop_3arm 3arm 3arm | 5 23 23 23 | nd nd nd nd | 0.37 0.26 0.47 0.47 | 2 4 4 7 | 8 | 1 | -17 | -17 |
| reads | miRBase family seed | ||
| seed | -----------UAGACUU--------------------------------------------------------------------------------------------------- | 3 | novel |
| seed | -----------------------------------------GUCUUGU--------------------------------------------------------------------- | 2 | novel |
| seed | --------GCUUAGA------------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | --------------------------------------------------------------------------------------------------GAGAGGU------------ | 1 | novel |
| seed | ----------------------------------------------------------------AUUGCAU---------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------TTAGACTTTCTTTGATATA---------------------------------------------------------------------------------------- | 19 | 3 | |
| ----------------------------------------TGTCTTGTGTTTTGAATGGAACA------------------------------------------------------ | 23 | 2 | |
| -------TGCTTAGACTTTCTTTGAT------------------------------------------------------------------------------------------- | 19 | 1 | |
| ---------------------------------------------------------------TATTGCATTACGTCCAAAA----------------------------------- | 19 | 1 | |
| -------------------------------------------------------------------------------------------------TGAGAGGTATCATTTCCTCA | 20 | 1 | |
| rat | catgatcTGCTTAGACTTTCTTTGATATAaaggaacattaTGTCTTGTGTTTTGAATGGAACATATTGCATTACGTCCAAAAttccagggtgtggctTGAGAGGTATCATTTCCTCA | ||
| ********************************************************************************************************************* | |||
| rat | .(((((((.((((..((..(((((..((...(((.....((((..((((((((....))))))))..))))....)))...))..)))))...))..)))).)).)))))....... | 0.840 -25.40 |
| rat | chromosome:1:47741719:47741835:1 | intergenic |
sblock12634 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.171 | no | no | 0.44/0.55 | 18/22/0.67 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 7 35 28 | 7 -4 1 | 5arm 3arm_loop 3arm | 25 130 130 | nd nd nd | 0.23 0.44 0.45 | 4 4 4 | 3 | 3 | 0 | 13 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------GAUGGUG---------------------------------------- | 1 | novel | ||
| seed | --------UCUUCUU---------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------GACAAGA--------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S2 | |||
| -------------------------------------------AGATGGTGAAGGTCGGTGTG---------------------------- | 20 | - | - | 1 | |
| -------ATCTTCTTGTGCAGTGCCAGCC-------------------------------------------------------------- | 22 | - | 1 | - | |
| --------------------------------------AGACAAGATGGTGAAGGT----------------------------------- | 18 | 1 | - | - | |
| rat | cagctgcATCTTCTTGTGCAGTGCCAGCCtcatcttatAGACAAGATGGTGAAGGTCGGTGTGaacagatttgactgtattgggtgcctgg | ||||
| ******************************************************************************************* | |||||
| rat | (((..((((((....((((((((((.((((((((((......))))))....)))).))).............))))))).))))))))). | 0.510 -27.01 | |||
| rat | chromosome:X:10021453:10021543:-1 | intergenic |
sblock12635 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.095 | no | no | 0.38/0.63 | 19/21/0.67 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 30 29 13 | -2 0 14 | 5arm_loop 3arm 3arm | 15 15 15 | nd nd nd | 0.50 0.53 0.29 | 6 6 4 | 3 | 3 | 2 | -1 |
| reads | miRBase family seed | ||||
| seed | -------------------------------CCUGAUC-------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------GAGCCAC---------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------CAGGAAG-------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T2S2 | |||
| ----------------------------------------------------GGAGCCACCAAGAGACAGG----------------------------- | 19 | - | - | 1 | |
| ------------------------------------------------------------------ACAGGAAGAAGCAGAAAAACA------------- | 21 | 1 | - | - | |
| ------------------------------CCCTGATCATCAAAGCCCTC-------------------------------------------------- | 20 | - | 1 | - | |
| rat | cccagattgaggtggtgccctctgcctctgCCCTGATCATCAAAGCCCTCaaGGAGCCACCAAGAGACAGGAAGAAGCAGAAAAACAttaaacacaatgg | ||||
| **************************************************************************************************** | |||||
| rat | .(((...((...(((((...(((((.(((..((((.((......((((....)).))......))..)))).))).)))))....)))))..))...))) | 0.920 -24.90 | |||
| rat | chromosome:X:12885136:12885235:-1 | intergenic |
sblock129 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.227 | no | no | 0.21/0.40 | 19/23/0.38 | 0.8 0.0 0.0 0.0 | 0.8 0.0 0.0 0.0 | 4 2 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 7 40 35 0 | 24 -10 6 40 | 5arm 5arm_loop_3arm 3arm 3arm | 5 23 23 23 | nd nd nd nd | 0.37 0.26 0.47 0.47 | 2 4 4 7 | 8 | 1 | -17 | -17 |
| reads | miRBase family seed | ||
| seed | -----------UAGACUU--------------------------------------------------------------------------------------------------- | 3 | novel |
| seed | -----------------------------------------GUCUUGU--------------------------------------------------------------------- | 2 | novel |
| seed | --------GCUUAGA------------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | --------------------------------------------------------------------------------------------------GAGAGGU------------ | 1 | novel |
| seed | ----------------------------------------------------------------AUUGCAU---------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------TTAGACTTTCTTTGATATA---------------------------------------------------------------------------------------- | 19 | 3 | |
| ----------------------------------------TGTCTTGTGTTTTGAATGGAACA------------------------------------------------------ | 23 | 2 | |
| -------TGCTTAGACTTTCTTTGAT------------------------------------------------------------------------------------------- | 19 | 1 | |
| ---------------------------------------------------------------TATTGCATTACGTCCAAAA----------------------------------- | 19 | 1 | |
| -------------------------------------------------------------------------------------------------TGAGAGGTATCATTTCCTCA | 20 | 1 | |
| rat | catgatcTGCTTAGACTTTCTTTGATATAaaggaacattaTGTCTTGTGTTTTGAATGGAACATATTGCATTACGTCCAAAAttccagggtgtggctTGAGAGGTATCATTTCCTCA | ||
| ********************************************************************************************************************* | |||
| rat | .(((((((.((((..((..(((((..((...(((.....((((..((((((((....))))))))..))))....)))...))..)))))...))..)))).)).)))))....... | 0.840 -25.40 |
| rat | chromosome:1:48340609:48340725:-1 | intergenic |
sblock4786 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.071 | no | no | 0.50/0.56 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 34 32 | -9 3 | 5arm_loop 3arm | 11 12 | nd nd | 0.61 0.28 | 10 4 | 2 | 2 | 0 | 9 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------GGAACCA------------------------------------------ | 1 | novel | |
| seed | -----------------------------------UGACCAA----------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T4S2 | |||
| ---------------------------------------------------------------GGGAACCATTGCTAAGTC-------------------------------- | 18 | - | 1 | |
| ----------------------------------ATGACCAAGGCTGACCTC------------------------------------------------------------- | 18 | 1 | - | |
| rat | ggtctttaatgtttctgatgccctggacattggcATGACCAAGGCTGACCTCataaataacttGGGAACCATTGCTAAGTCtggcaatggcattcatggaggctctccaggct | |||
| ***************************************************************************************************************** | ||||
| rat | (((((.....((((((((((((((((((.((((((((.(((((.................)))))....))).)))))))))))....))))))...)))))).....))))) | 0.820 -33.93 | ||
| rat | chromosome:16:64646102:64646214:-1 | intergenic |
sblock6216 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.110 | no | no | 0.50/0.56 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 42 23 | -9 3 | 5arm_loop 3arm | 11 12 | nd nd | 0.61 0.28 | 10 4 | 2 | 2 | 0 | 9 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------GGAACCA--------------------------------- | 1 | novel | |
| seed | -------------------------------------------UGACCAA-------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T4S2 | |||
| -----------------------------------------------------------------------GGGAACCATTGCTAAGTC----------------------- | 18 | - | 1 | |
| ------------------------------------------ATGACCAAGGCTGACCTC---------------------------------------------------- | 18 | 1 | - | |
| rat | cctcaggaacacatgctgactttggtggacacaggcattggcATGACCAAGGCTGACCTCataaataacttGGGAACCATTGCTAAGTCtggtacaaaggcattcatggagg | |||
| **************************************************************************************************************** | ||||
| rat | ((((..((....((((...(((((....((.(((((.((((((((.(((((.................)))))....))).)))))))))))).)))))))))))...)))) | 0.990 -31.73 | ||
| rat | chromosome:2:223131289:223131400:-1 | intergenic |
sblock6594 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.914 | no | no | 0.44/0.56 | 18/22/0.40 | 0.0 1.0 0.0 0.0 | 0.0 1.0 0.0 0.0 | 1 2 1 1 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 19 23 29 40 | 19 11 5 -4 | 5arm 5arm 5arm 3arm_loop | 18 18 25 130 | nd nd nd nd | 0.50 0.27 0.32 0.50 | 4 4 4 3 | 5 | 3 | 0 | -15 |
| reads | miRBase family seed | ||||
| seed | ------------------------------UCUUCUU--------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------GACAAGA-------------------------------------------------- | 1 | novel | ||
| seed | --------------------GACAGCC------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------CGCAUCU------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------GCCGCAU--------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T4S1 | |||
| -------------------AGACAGCCGCATCTTCTT--------------------------------------------------------------------------------- | 18 | 1 | - | - | |
| -----------------------AGCCGCATCTTCTTGTGCAGTG------------------------------------------------------------------------- | 22 | - | - | 1 | |
| ------------------------------------------------------------AGACAAGATGGTGAAGGT---------------------------------------- | 18 | 1 | - | - | |
| -----------------------------ATCTTCTTGTGCAGTGCCAGCC------------------------------------------------------------------- | 22 | - | 1 | - | |
| -------------------------CCGCATCTTCTTGTGCAG--------------------------------------------------------------------------- | 18 | 1 | - | - | |
| rat | aggctcctccttgttccagAGACAGCCGCATCTTCTTGTGCAGTGCCAGCCtccttccatAGACAAGATGGTGAAGGTcagtgtgaaaggatttggccatactgggtgcttggttacc | ||||
| ********************************************************************************************************************** | |||||
| rat | .((.....((..(((((((.....((((.(((((....((((.((((.(((..(((........)))..)))...)).)).))))..))))).))))....))))).))..))...)) | 0.450 -29.60 | |||
| rat | chromosome:2:218974680:218974797:1 | intergenic |
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