other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH (12 loci)
sblock6652 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.017 | no | no | 0.50/0.50 | 18/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 38 14 | -4 16 | 5arm_loop 3arm | 13 13 | nd nd | 0.50 0.27 | 5 4 | 2 | 2 | 0 | -15 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------CCUCAGU---------------------------- | 1 | novel | |
| seed | ---------------------------------------CGAUGUG--------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| --------------------------------------ACGATGTGTTCAGGTCTC----------------------------------------------------- | 18 | 1 | - | |
| -------------------------------------------------------------------------CCCTCAGTTCTCTTTAGACACC-------------- | 22 | - | 1 | |
| rat | agcatgaagacagctgcctggagtggactgagtgacagACGATGTGTTCAGGTCTCtcctgtgacatccagagCCCTCAGTTCTCTTTAGACACCagtgtctgatgttc | |||
| ************************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042972 ENSRNOG00000029682 Clic1 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041917 ENSRNOG00000021604 RT1-CE1 | |||
| rat | (((((..(((((.(((.((((((.((((((((........(((((...((((.....))))..))))).......)))))))).))))))....)))))))).))))). | 0.990 -38.16 | ||
| rat | chromosome:20:3509944:3510052:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000048535|ENSRNOG00000021604 ## Same_strand|Intronic_non-coding|ENSRNOT00000041917|ENSRNOG00000021604 ## Same_strand|Intronic_coding|ENSRNOT00000042972|ENSRNOG00000029682 ## ENSRNOG00000021604|protein_coding|RT1-CE1|RT1 class I, CE1 [Source:RefSeq_peptide;Acc:NP_001008832] ## ENSRNOG00000029682|protein_coding|Clic1|chloride intracellular channel 1 [Source:RefSeq_peptide;Acc:NP_001002807] |
sblock7872 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.097 | no | no | 0.38/0.63 | 19/21/0.67 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 26 29 13 | -2 0 14 | 5arm_loop 3arm 3arm | 15 15 15 | nd nd nd | 0.50 0.53 0.29 | 6 6 4 | 3 | 3 | 2 | -1 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------GAGCCAC---------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------CAGGAAG-------------------------- | 1 | novel | ||
| seed | ---------------------------CCUGAUC-------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T2S2 | |||
| --------------------------------------------------------------ACAGGAAGAAGCAGAAAAACA------------- | 21 | 1 | - | - | |
| ------------------------------------------------GGAGCCACCAAGAGACAGG----------------------------- | 19 | - | - | 1 | |
| --------------------------CCCTGATCATCAAAGCCCTC-------------------------------------------------- | 20 | - | 1 | - | |
| rat | gattgaggtggtgccctctgcctctgCCCTGATCATCAAAGCCCTCaaGGAGCCACCAAGAGACAGGAAGAAGCAGAAAAACAttaaacacagttg | ||||
| ************************************************************************************************ | |||||
| rat | (((((...(((((...(((((.(((..((((.((......((((....)).))......))..)))).))).)))))....)))))....))))). | 0.930 -24.60 | |||
| rat | chromosome:3:20406248:20406343:1 | intergenic |
sblock9246 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.292 | no | no | 0.44/0.56 | 18/22/0.33 | 1.0 0.0 | 1.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 9 29 | 11 -1 | 5arm 3arm | 18 130 | nd nd | 0.27 0.39 | 4 3 | 3 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ------------CGCAUCU-------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------GACAAGA--------------------------------------- | 1 | novel | |
| seed | ----------GCCGCAU---------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| ----------------------------------------------AGACAAGATGGTGAAGGT----------------------------- | 18 | 1 | - | |
| ---------AGCCGCATCTTCTTGTGCAGTG-------------------------------------------------------------- | 22 | - | 1 | |
| -----------CCGCATCTTCTTGTGCAG---------------------------------------------------------------- | 18 | 1 | - | |
| rat | tccagaaacAGCCGCATCTTCTTGTGCAGTGccggccttgtcccatAGACAAGATGGTGAAGGTtagtgtaaaaggatttggcccgattgggt | |||
| ********************************************************************************************* | ||||
| rat | (((((.....((((.(((((....((((.((((.((((((((.....)))))...)))...)).)).))))..))))).))))....))))). | 0.950 -25.10 | ||
| rat | chromosome:4:186634968:186635060:1 | intergenic |
sblock99 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.227 | no | no | 0.21/0.40 | 19/23/0.38 | 0.8 0.0 0.0 0.0 | 0.8 0.0 0.0 0.0 | 4 2 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 7 40 35 0 | 24 -10 6 40 | 5arm 5arm_loop_3arm 3arm 3arm | 5 23 23 23 | nd nd nd nd | 0.37 0.26 0.47 0.47 | 2 4 4 7 | 8 | 1 | -17 | -17 |
| reads | miRBase family seed | ||
| seed | -----------UAGACUU--------------------------------------------------------------------------------------------------- | 3 | novel |
| seed | -----------------------------------------GUCUUGU--------------------------------------------------------------------- | 2 | novel |
| seed | --------GCUUAGA------------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | --------------------------------------------------------------------------------------------------GAGAGGU------------ | 1 | novel |
| seed | ----------------------------------------------------------------AUUGCAU---------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------TTAGACTTTCTTTGATATA---------------------------------------------------------------------------------------- | 19 | 3 | |
| ----------------------------------------TGTCTTGTGTTTTGAATGGAACA------------------------------------------------------ | 23 | 2 | |
| -------TGCTTAGACTTTCTTTGAT------------------------------------------------------------------------------------------- | 19 | 1 | |
| ---------------------------------------------------------------TATTGCATTACGTCCAAAA----------------------------------- | 19 | 1 | |
| -------------------------------------------------------------------------------------------------TGAGAGGTATCATTTCCTCA | 20 | 1 | |
| rat | catgatcTGCTTAGACTTTCTTTGATATAaaggaacattaTGTCTTGTGTTTTGAATGGAACATATTGCATTACGTCCAAAAttccagggtgtggctTGAGAGGTATCATTTCCTCA | ||
| ********************************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043239 ENSRNOG00000033820 | ||
| <<<<<<<<....................................................................................................................... | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | ||
| rat | .(((((((.((((..((..(((((..((...(((.....((((..((((((((....))))))))..))))....)))...))..)))))...))..)))).)).)))))....... | 0.840 -25.40 |
| rat | chromosome:1:47790024:47790140:-1 | Same_strand|Intronic_coding|ENSRNOT00000043239|ENSRNOG00000033820 ## ENSRNOG00000033820|protein_coding|| |
sblock2188 [novel_lenNOK_multiarm_DicerNOK_Multihit_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.035 | no | no | 0.58/0.63 | 19/24/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 16 1 | -7 5 | 5arm_loop 3arm | 71 71 | nd nd | 0.47 0.29 | 8 4 | 2 | 2 | 0 | 10 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------CUGGCAU----------------- | 1 | novel | |
| seed | -----------------AUCCCAG------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S1 | |||
| -----------------------------------------ACTGGCATGGCCTTCCGTGTTCCT- | 24 | - | 1 | |
| ----------------CATCCCAGAGCTGAACGGG------------------------------- | 19 | 1 | - | |
| rat | aggctgtggacaaggtCATCCCAGAGCTGAACGGGaagctcACTGGCATGGCCTTCCGTGTTCCTa | |||
| ****************************************************************** | ||||
| rat | (((...((((..(((((((.((((((((........)))))..))).)))))))))))....))). | 1.000 -24.90 | ||
| rat | chromosome:1:226990133:226990198:1 | intergenic |
novel_Multihit_5varHIGH_loopOverlap (11 loci)
block845176 [novel_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.43/0.46 | 20/24/1.00 | 2.0 | 0.2 | 4 | 0 | 2 | 0 | 13 | -4 | 3arm | 24 | nd | 0.24 | 3 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------GGACUUA-------------------------- | 2 | novel | |
| seed | ---------------------------------------AGCUGGA------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------------------------TAGCTGGACTTACACTGTTGCAGT-------------- | 24 | - | 2 | |
| ------------------------------------------TGGACTTACACTGTTGCAGTA------------- | 21 | 1 | - | |
| ------------------------------------------TGGACTTACACTGTTGCAGT-------------- | 20 | - | 1 | |
| rat | caatttaaaggacctctactataacaggttatccactgTAGCTGGACTTACACTGTTGCAGTAcctcaactgttgc | |||
| **************************************************************************** | ||||
| rat | ((((....(((.....((((.((((((((..((((.......))))...)).)))))).))))))).....)))). | 0.780 -15.10 | ||
| rat | chromosome:1:50585171:50585246:-1 | intergenic |
block845208 [novel_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.43/0.46 | 20/24/1.00 | 2.0 | 0.2 | 4 | 0 | 2 | 0 | 13 | -4 | 3arm | 24 | nd | 0.24 | 3 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------GGACUUA-------------------------- | 2 | novel | |
| seed | ---------------------------------------AGCUGGA------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------------------------TAGCTGGACTTACACTGTTGCAGT-------------- | 24 | - | 2 | |
| ------------------------------------------TGGACTTACACTGTTGCAGTA------------- | 21 | 1 | - | |
| ------------------------------------------TGGACTTACACTGTTGCAGT-------------- | 20 | - | 1 | |
| rat | caatttaaaggacctctactataacaggttatccactgTAGCTGGACTTACACTGTTGCAGTAcctcaactgttgc | |||
| **************************************************************************** | ||||
| rat | ((((....(((.....((((.((((((((..((((.......))))...)).)))))).))))))).....)))). | 0.780 -15.10 | ||
| rat | chromosome:1:50586779:50586854:-1 | intergenic |
block845797 [novel_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.43/0.46 | 20/24/1.00 | 2.0 | 0.2 | 4 | 0 | 2 | 0 | 13 | -4 | 3arm | 24 | nd | 0.24 | 3 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------GGACUUA-------------------------- | 2 | novel | |
| seed | ---------------------------------------AGCUGGA------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------------------------TAGCTGGACTTACACTGTTGCAGT-------------- | 24 | - | 2 | |
| ------------------------------------------TGGACTTACACTGTTGCAGTA------------- | 21 | 1 | - | |
| ------------------------------------------TGGACTTACACTGTTGCAGT-------------- | 20 | - | 1 | |
| rat | caatttaaaggacctctactataacaggttatccactgTAGCTGGACTTACACTGTTGCAGTAcctcaactgttgc | |||
| **************************************************************************** | ||||
| rat | ((((....(((.....((((.((((((((..((((.......))))...)).)))))).))))))).....)))). | 0.780 -15.10 | ||
| rat | chromosome:1:50834917:50834992:-1 | intergenic |
block846675 [novel_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.43/0.46 | 20/24/1.00 | 2.0 | 0.2 | 4 | 0 | 2 | 0 | 13 | -4 | 3arm | 24 | nd | 0.24 | 3 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------GGACUUA-------------------------- | 2 | novel | |
| seed | ---------------------------------------AGCUGGA------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------------------------TAGCTGGACTTACACTGTTGCAGT-------------- | 24 | - | 2 | |
| ------------------------------------------TGGACTTACACTGTTGCAGTA------------- | 21 | 1 | - | |
| ------------------------------------------TGGACTTACACTGTTGCAGT-------------- | 20 | - | 1 | |
| rat | caatttaaaggacctctactataacaggttatccactgTAGCTGGACTTACACTGTTGCAGTAcctcaactgttgc | |||
| **************************************************************************** | ||||
| rat | ((((....(((.....((((.((((((((..((((.......))))...)).)))))).))))))).....)))). | 0.780 -15.10 | ||
| rat | chromosome:1:51403282:51403357:-1 | intergenic |
block961655 [novel_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.096 | no | no | 0.43/0.46 | 20/24/1.00 | 2.0 | 0.2 | 4 | 0 | 2 | 0 | 13 | -4 | 3arm | 24 | nd | 0.24 | 2 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------GGACUUA-------------------------- | 2 | novel | |
| seed | ---------------------------------------AGCUGGA------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------------------------TAGCTGGACTTACACTGTTGCAGT-------------- | 24 | - | 2 | |
| ------------------------------------------TGGACTTACACTGTTGCAGTA------------- | 21 | 1 | - | |
| ------------------------------------------TGGACTTACACTGTTGCAGT-------------- | 20 | - | 1 | |
| rat | caatttaaaggacctctactataacaggatatccactcTAGCTGGACTTACACTGTTGCAGTAcctcaactgttgc | |||
| **************************************************************************** | ||||
| rat | ((((....(((.....((((.((((((..((((((.......))))..))..)))))).))))))).....)))). | 0.990 -14.00 | ||
| rat | chromosome:1:51024983:51025058:1 | intergenic |
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