| seed | ---------------ACCAGAC----------------------------------------------- | 3 | novel |
| seed | ----------------------CAGGACU---------------------------------------- | 3 | novel |
| seed | ------------------AGACCAG-------------------------------------------- | 2 | novel |
| seed | --------------------ACCAGGA------------------------------------------ | 2 | novel |
| seed | --------------AACCAGA------------------------------------------------ | 2 | novel |
| seed | -----------------CAGACCA--------------------------------------------- | 2 | novel |
| seed | -----------AUAAACC--------------------------------------------------- | 1 | novel |
| seed | ------------UAAACCA-------------------------------------------------- | 1 | novel |
| seed | ----------AAUAAAC---------------------------------------------------- | 1 | novel |
| seed | ----------------CCAGACC---------------------------------------------- | 1 | novel |
| seed | -------------------GACCAGG------------------------------------------- | 1 | novel |
| | | | T4S1 | T4S2 |
| | ----------------CCAGACCAGGACTTGCAAC---------------------------------- | 19 | 1 | 1 |
| | -------------AAACCAGACCAGGACTTGCAACC--------------------------------- | 23 | 2 | - |
| | -----------------CAGACCAGGACTTGCAACCTAC------------------------------ | 22 | 2 | - |
| | --------------AACCAGACCAGGACTTGCAACC--------------------------------- | 22 | 1 | 1 |
| | ---------------------CCAGGACTTGCAACCTACA----------------------------- | 19 | - | 2 |
| | ------------------AGACCAGGACTTGCAACC--------------------------------- | 18 | 1 | - |
| | -------------------GACCAGGACTTGCAACCTAC------------------------------ | 20 | 1 | - |
| | ---------AAATAAACCAGACCAGGACT---------------------------------------- | 20 | 1 | - |
| | -----------ATAAACCAGACCAGGACTTG-------------------------------------- | 20 | - | 1 |
| | ---------------------CCAGGACTTGCAACCTACAA---------------------------- | 20 | 1 | - |
| | ----------AATAAACCAGACCAGGACTTGC------------------------------------- | 22 | - | 1 |
| | ---------------ACCAGACCAGGACTTGCAACCT-------------------------------- | 22 | - | 1 |
| | --------------AACCAGACCAGGACTTGCAACCT-------------------------------- | 23 | 1 | - |
| | -------------------GACCAGGACTTGCAACCTACA----------------------------- | 21 | 1 | - |
| rat | ttgctttatAAATAAACCAGACCAGGACTTGCAACCTACAAaagcccgtcttctttcttgtgtgagtag | |
| | ********************************************************************* | |
| | >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..................................... | ENSRNOT00000011773 ENSRNOG00000008536 Actc1 |
| rat | .(((((....((.(((..((((..((.(((...........))))).))))..))).))....))))). | 1.000 -9.20 |
| seed | --------------------------------------------------------------GUAGAAU------------------------ | 6 | novel |
| seed | -----------------------------------------------------------UUUGUAG--------------------------- | 5 | novel |
| seed | --------------------------------------------------------CCUUUUG------------------------------ | 3 | novel |
| seed | ----------------------------------------------------------------AGAAUUG---------------------- | 2 | novel |
| seed | -----------------------------------------------------------------GAAUUGU--------------------- | 1 | miR-219 |
| seed | -------------------------------------------------------------UGUAGAA------------------------- | 1 | novel |
| seed | ---------------------------------------------------------------UAGAAUU----------------------- | 1 | novel |
| seed | ------------------------------------------------------------UUGUAGA-------------------------- | 1 | novel |
| | | | T1S1 | T5S1 |
| | -------------------------------------------------------------TGTAGAATTGTAACTGCCAC------------ | 20 | - | 5 |
| | ----------------------------------------------------------TTTTGTAGAATTGTAACTGCCACT----------- | 24 | 1 | 3 |
| | ---------------------------------------------------------------TAGAATTGTAACTGCCACT----------- | 19 | 1 | 1 |
| | -------------------------------------------------------CCCTTTTGTAGAATTGTAACTG---------------- | 22 | - | 2 |
| | --------------------------------------------------------------GTAGAATTGTAACTGCCAC------------ | 19 | - | 1 |
| | ----------------------------------------------------------------AGAATTGTAACTGCCACTA---------- | 19 | - | 1 |
| | ------------------------------------------------------------TTGTAGAATTGTAACTGCCAC------------ | 21 | - | 1 |
| | -------------------------------------------------------------TGTAGAATTGTAACTGCCACT----------- | 21 | - | 1 |
| | -------------------------------------------------------CCCTTTTGTAGAATTGTAACT----------------- | 21 | - | 1 |
| | -----------------------------------------------------------TTTGTAGAATTGTAACTGCCACT----------- | 23 | - | 1 |
| | ----------------------------------------------------------TTTTGTAGAATTGTAACTG---------------- | 19 | - | 1 |
| rat | gtgcaaaagattaatgatatgaatgtggtgtcgagtttatgaaggtgttctttctCCCTTTTGTAGAATTGTAACTGCCACTatagtctgcat | |
| | ********************************************************************************************* | |
| rat | ((((...((((((...........((((((((((.((((..((((............))))..)))).)))..)).)))))..)))))))))) | 0.710 -15.92 |
| seed | ----------------------------------------------------------UGCUCGG---------------------------------------- | 3 | novel |
| seed | ------------------------------------------------------GGCAUGC-------------------------------------------- | 3 | novel |
| seed | -----------------------------------------------GGAACUG--------------------------------------------------- | 2 | novel |
| seed | --------------------------------------------------------CAUGCUC------------------------------------------ | 2 | novel |
| seed | ---------------------------------------------------------AUGCUCG----------------------------------------- | 1 | novel |
| seed | -------------------------------------------------AACUGGG------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------GCAUGCU------------------------------------------- | 1 | novel |
| seed | -----------------------------------------------------------------UGUCGCC--------------------------------- | 1 | novel |
| seed | ---------------------------------------------------------------GGUGUCG----------------------------------- | 1 | novel |
| seed | -------------------------------------------------------------UCGGUGU------------------------------------- | 1 | novel |
| | | | T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S2 |
| | ---------------------------------------------------------ATGCTCGGTGTCGCCGCAGC---------------------------- | 20 | 1 | - | - | - | 1 | - | - | - |
| | -------------------------------------------------------GCATGCTCGGTGTCGCCGCA------------------------------ | 20 | - | - | - | - | 1 | - | - | 1 |
| | --------------------------------------------------------CATGCTCGGTGTCGCCGCAG----------------------------- | 20 | - | - | - | - | - | - | - | 1 |
| | ----------------------------------------------------------------GTGTCGCCGCAGCCTTGGGTC-------------------- | 21 | - | - | - | - | - | 1 | - | - |
| | ------------------------------------------------------------CTCGGTGTCGCCGCAGCCTT------------------------- | 20 | - | - | - | - | 1 | - | - | - |
| | -----------------------------------------------------GGGCATGCTCGGTGTCGCC--------------------------------- | 19 | - | - | - | 1 | - | - | - | - |
| | ------------------------------------------------------GGCATGCTCGGTGTCGCCG-------------------------------- | 19 | - | - | - | - | - | - | 1 | - |
| | -----------------------------------------------------GGGCATGCTCGGTGTCGCCGCA------------------------------ | 22 | - | - | - | 1 | - | - | - | - |
| | --------------------------------------------------------------CGGTGTCGCCGCAGCCTTGGGTC-------------------- | 23 | - | - | 1 | - | - | - | - | - |
| | ----------------------------------------------AGGAACTGGGCATGCTCGGTGTC------------------------------------ | 23 | - | - | 1 | - | - | - | - | - |
| | ---------------------------------------------------------ATGCTCGGTGTCGCCGCAGCCT-------------------------- | 22 | - | - | - | - | - | - | 1 | - |
| | -----------------------------------------------------GGGCATGCTCGGTGTCGCCGCAGCC--------------------------- | 25 | - | - | - | 1 | - | - | - | - |
| | ----------------------------------------------AGGAACTGGGCATGCTCG----------------------------------------- | 18 | - | 1 | - | - | - | - | - | - |
| | ------------------------------------------------GAACTGGGCATGCTCGGTGTC------------------------------------ | 21 | - | - | - | 1 | - | - | - | - |
| rat | gccgtagcctataaaatccggagcgcggcgcgcggagcggcaggcgAGGAACTGGGCATGCTCGGTGTCGCCGCAGCCTTGGGTCgcaagtaggaagcccgtgca | |
| | ********************************************************************************************************* | |
| rat | ((((...(((((...(((((..(((((((((((.(((((.(((........)))....))))).))).)))))).))..))))).....))))).....)).)). | 0.930 -44.50 |
| seed | ---------------------------------------------GCGCUGC---------------------------- | 6 | novel |
| seed | ------------------------------------------CCUGCGC------------------------------- | 4 | novel |
| seed | ----------------------------------------CUCCUGC--------------------------------- | 2 | novel |
| seed | -------------------------------------CUUCUCC------------------------------------ | 1 | miR-207 |
| | | | T1S1 | T1S2 | T2S2 | T4S2 | T5S1 |
| | --------------------------------------------TGCGCTGCTCTTGAAACCCA---------------- | 20 | - | 1 | - | 1 | 4 |
| | -----------------------------------------TCCTGCGCTGCTCTTGAAACCCA---------------- | 23 | - | 1 | - | - | 3 |
| | ---------------------------------------TCTCCTGCGCTGCTCTTGAAACCCA---------------- | 25 | 1 | - | 1 | - | - |
| | ------------------------------------CCTTCTCCTGCGCTGCTCT------------------------- | 19 | - | - | - | - | 1 |
| rat | gtttgttgggtaaaggagtcgatgaacagccaatcgccttcTCCTGCGCTGCTCTTGAAACCCAtttgtcctttacaagg | |
| | ******************************************************************************** | |
| rat | .(((((.((..(((((..((((.((.((((((............)).)))).))))))...)).)))..))...))))). | 0.990 -19.00 |
| seed | -------------------------------------------GCGAUGC---------------------------------------------------------------------- | 9 | novel |
| seed | -------------------------------------CAGGAUG---------------------------------------------------------------------------- | 3 | novel |
| seed | -----------------------------------CUCAGGA------------------------------------------------------------------------------ | 1 | novel |
| seed | ----------------------------------------------AUGCUAA------------------------------------------------------------------- | 1 | novel |
| | | | T4S1 | T5S1 |
| | ------------------------------------------TGCGATGCTAATGAGCCAGAGA-------------------------------------------------------- | 22 | - | 5 |
| | ------------------------------------------TGCGATGCTAATGAGCCAGAG--------------------------------------------------------- | 21 | 1 | 2 |
| | ------------------------------------TCAGGATGCGATGCTAATGAGCCA------------------------------------------------------------ | 24 | - | 2 |
| | ------------------------------------TCAGGATGCGATGCTAATGAGCCAG----------------------------------------------------------- | 25 | - | 1 |
| | ----------------------------------TCTCAGGATGCGATGCTA-------------------------------------------------------------------- | 18 | - | 1 |
| | ------------------------------------------TGCGATGCTAATGAGCCA------------------------------------------------------------ | 18 | - | 1 |
| | ---------------------------------------------GATGCTAATGAGCCAGAGA-------------------------------------------------------- | 19 | - | 1 |
| rat | ttggttgaatctgttatggagatggtggggggattcTCAGGATGCGATGCTAATGAGCCAGAGAtagtctggagtgttcatagcagtgtctgagcttccactaacactccacactcacca | |
| | ************************************************************************************************************************ | |
| rat | .(((.(((...(((...((((.(((((((((....((((((.(((.(((..((((..(((((.....)))))..))))))).)))...)))))))))))))))...))))))).)))))) | 0.990 -39.70 |
| seed | -------------------------GGUGCUC--------------------------------------------------- | 6 | novel |
| seed | ----------------CCCCACC------------------------------------------------------------ | 3 | novel |
| seed | ----------GACUCUC------------------------------------------------------------------ | 2 | novel |
| | | | T4S2 | T5S1 |
| | ------------------------TGGTGCTCTAAGATATAAAAAG------------------------------------- | 22 | - | 5 |
| | ---------TGACTCTCCCCACCATGGTGCTCT-------------------------------------------------- | 24 | - | 2 |
| | ---------------TCCCCACCATGGTGCTCTA------------------------------------------------- | 19 | - | 1 |
| | ------------------------TGGTGCTCTAAGATATAAA---------------------------------------- | 19 | - | 1 |
| | ---------------TCCCCACCATGGTGCTCTAAGA---------------------------------------------- | 22 | - | 1 |
| | ---------------TCCCCACCATGGTGCTCT-------------------------------------------------- | 18 | 1 | - |
| rat | tccttggccTGACTCTCCCCACCATGGTGCTCTAAGATATAAAAAGagatagaatgagaaggggacctgggtactgtgctgga | |
| | *********************************************************************************** | |
| rat | (((..(((...(((((((((..(((..((((((...........)))).))..)))....)))))...)))).....)))))) | 0.960 -18.30 |
| seed | -----------------------------------AGGCCUG--------------------------------------------------------------------------- | 3 | novel |
| seed | -----------------------------------------GGUUCGU--------------------------------------------------------------------- | 3 | novel |
| seed | -------------------------------------GCCUGGU------------------------------------------------------------------------- | 2 | novel |
| seed | ------------------------------GGAAUAG-------------------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------AGGAAUA--------------------------------------------------------------------------------- | 1 | novel |
| | | | T1S1 | T5S1 |
| | ----------------------------------TAGGCCTGGTTCGTGAGTCT--------------------------------------------------------------- | 20 | - | 2 |
| | ----------------------------------------TGGTTCGTGAGTCTCCCCTGAG------------------------------------------------------- | 22 | - | 2 |
| | ----------------------------TAGGAATAGGCCTGGTTC----------------------------------------------------------------------- | 18 | - | 1 |
| | ------------------------------------GGCCTGGTTCGTGAGTCTCCCCTG--------------------------------------------------------- | 24 | - | 1 |
| | ------------------------------------GGCCTGGTTCGTGAGTCTCCCC----------------------------------------------------------- | 22 | - | 1 |
| | ----------------------------------------TGGTTCGTGAGTCTCCCCTGAGA------------------------------------------------------ | 23 | - | 1 |
| | ----------------------------------TAGGCCTGGTTCGTGAGT----------------------------------------------------------------- | 18 | - | 1 |
| | -----------------------------AGGAATAGGCCTGGTTCGTGAG------------------------------------------------------------------ | 22 | 1 | - |
| rat | tgaccggagcagccactcctggggcggcTAGGAATAGGCCTGGTTCGTGAGTCTCCCCTGAGAtaagtgacttaggtttagtttaatacctgggaagcctctgtgatgctggggcag | |
| | ********************************************************************************************************************* | |
| rat | ((.((..((((..(((....(((((..(((((..(((((((((.((((..(((((....)))))..)))).)))))))))........)))))...))))).))).))))..)))). | 0.910 -39.70 |
| seed | --------------------------GGCUACA------------------------------------------------ | 4 | novel |
| seed | ----------------------AGUUGGC---------------------------------------------------- | 3 | novel |
| seed | -----------------------------------AGUAGAU--------------------------------------- | 2 | novel |
| seed | ------------------------------ACAGAAG-------------------------------------------- | 1 | novel |
| seed | --------------------------------------AGAUAGU------------------------------------ | 1 | novel |
| seed | -------------------------------------UAGAUAG------------------------------------- | 1 | novel |
| seed | ----------------GGCAGUA---------------------------------------------------------- | 1 | novel |
| seed | ----------------------------------AAGUAGA---------------------------------------- | 1 | novel |
| | | | T1S1 | T5S1 |
| | ---------------------TAGTTGGCTACAGAAGTAGA---------------------------------------- | 20 | - | 3 |
| | -------------------------TGGCTACAGAAGTAGATAGTGTG--------------------------------- | 23 | - | 2 |
| | ----------------------------------AAGTAGATAGTGTGTGACTC--------------------------- | 20 | 1 | - |
| | -----------------------------TACAGAAGTAGATAGTGTGTGACTC--------------------------- | 25 | - | 1 |
| | ------------------------------------GTAGATAGTGTGTGACTCT-------------------------- | 19 | - | 1 |
| | ----------------------------------AAGTAGATAGTGTGTGACTCTG------------------------- | 22 | - | 1 |
| | -------------------------TGGCTACAGAAGTAGATAGT------------------------------------ | 20 | - | 1 |
| | -------------------------TGGCTACAGAAGTAGATAGTG----------------------------------- | 21 | - | 1 |
| | ---------------------------------GAAGTAGATAGTGTGTGACTC--------------------------- | 21 | - | 1 |
| | ---------------TGGCAGTAGTTGGCTACAGAAGTAGA---------------------------------------- | 26 | - | 1 |
| | -------------------------------------TAGATAGTGTGTGACTCTG------------------------- | 19 | - | 1 |
| rat | gttcagagacaacctTGGCAGTAGTTGGCTACAGAAGTAGATAGTGTGTGACTCTGgtgtcccctgctgctctggctgagc | |
| | ********************************************************************************* | |
| rat | ((((((......((..((((((((..(((..((((..((.((...)).))..))))..)))..))))))))..)))))))) | 0.990 -26.60 |
| seed | ------------------------------CCACAUC--------------------------------------------------------------------- | 6 | novel |
| seed | -----------------------------UCCACAU---------------------------------------------------------------------- | 4 | novel |
| seed | --------------------------------------GUAUCUU------------------------------------------------------------- | 1 | novel |
| | | | T1S1 | T1S2 | T5S1 |
| | -----------------------------TCCACATCTGTATCTTATCTGTCA----------------------------------------------------- | 24 | - | 1 | 3 |
| | ----------------------------TTCCACATCTGTATCTTATCTGTCA----------------------------------------------------- | 25 | - | - | 3 |
| | -----------------------------TCCACATCTGTATCTTATCTGTC------------------------------------------------------ | 23 | - | - | 2 |
| | ----------------------------TTCCACATCTGTATCTTATCTGT------------------------------------------------------- | 23 | 1 | - | - |
| | -------------------------------------TGTATCTTATCTGTCATAGCAGA---------------------------------------------- | 23 | - | - | 1 |
| rat | ttgacagaggctctagtacattctgtatTTCCACATCTGTATCTTATCTGTCATAGCAGAttttagggcaggtgtcagaggctggatgtggtagcttttcactcag | |
| | ********************************************************************************************************** | |
| rat | .(((..((((..(((.(((((((.((......((((((((.(((.((((((....))))))...))))))))))).....)).))))))).)))..))))..))). | 0.980 -32.60 |
| seed | ----------------------------GGCAGGC---------------------------------------------------------------------- | 6 | novel |
| seed | ------------------------------CAGGCUA-------------------------------------------------------------------- | 2 | novel |
| seed | --------------------------------GGCUACG------------------------------------------------------------------ | 1 | novel |
| seed | --------------------CCAGGCU------------------------------------------------------------------------------ | 1 | novel |
| | | | T2S1 | T2S2 | T3S1 | T5S2 |
| | ---------------------------CGGCAGGCTACGTTTACCTC---------------------------------------------------------- | 20 | - | - | - | 6 |
| | -----------------------------GCAGGCTACGTTTACCTCAC-------------------------------------------------------- | 20 | 1 | 1 | - | - |
| | -------------------CCCAGGCTCGGCAGGCTACG------------------------------------------------------------------ | 20 | - | - | 1 | - |
| | -------------------------------AGGCTACGTTTACCTCAC-------------------------------------------------------- | 18 | 1 | - | - | - |
| rat | tgccggtccctttgctagtcccaggctCGGCAGGCTACGTTTACCTCacagcttctcacagagcgaagcgccgcaaagttttgacattttggcaacggagacgca | |
| | ********************************************************************************************************* | |
| | ................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000060843 ENSRNOG00000001007 Baiap2l1 |
| rat | .((..(((((.(((((((((..(((((((((..(((.(((((..................))))).)))))))...))))).)))....)))))).)).))))). | 0.580 -28.47 |