other hairpins
novel_cloningOK_loopOverlap (11 loci)
novel_cloningOK_multiarm_DicerNOK_5varHIGH (11 loci)
sblock10134 [novel_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.139 | no | no | 0.37/0.50 | 18/25/0.71 | 1.9 0.0 0.0 2.0 | 1.7 1.0 0.0 1.5 | 12 4 1 4 | 0 0 0 0 | 3 1 1 1 | 0 0 0 0 | 0 17 13 0 | 8 1 7 13 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.24 0.32 0.32 0.26 | 3 3 3 2 | 21 | 4 | -5 | 0 |
| reads | miRBase family seed | |||||
| seed | ----CUCCAUC------------------------------------------------------------------------ | 6 | novel | |||
| seed | ------------------AGAAGUA---------------------------------------------------------- | 4 | novel | |||
| seed | ------CCAUCUG---------------------------------------------------------------------- | 2 | novel | |||
| seed | -GUUCUCC--------------------------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------------------------ACGUUUA-------------- | 2 | novel | |||
| seed | ----------------------------------------------------------AUGUACG------------------ | 2 | novel | |||
| seed | --------AUCUGUC-------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------CGCAUGA------------------------ | 1 | novel | |||
| seed | -------------UCUCUAG--------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S1 | |||
| ---TCTCCATCTGTCTCTAGAAGT----------------------------------------------------------- | 21 | 1 | - | - | 3 | |
| ---------------------------------------------------------GATGTACGTTTATGCAGAGGAGT--- | 23 | - | - | - | 2 | |
| -----TCCATCTGTCTCTAGAAGT----------------------------------------------------------- | 19 | 1 | 1 | - | - | |
| -------------------------------------------------------------TACGTTTATGCAGAGGAGTTGT | 22 | - | - | - | 2 | |
| -----------------TAGAAGTACCTGGTGCAAAAGG-------------------------------------------- | 22 | - | - | - | 2 | |
| TGTTCTCCATCTGTCTCTAGAAGT----------------------------------------------------------- | 24 | - | - | - | 2 | |
| ---------------------------------------------------TCGCATGATGTACGTTTAT------------- | 19 | - | - | 1 | - | |
| ---TCTCCATCTGTCTCTAGA-------------------------------------------------------------- | 18 | - | - | - | 1 | |
| -----------------TAGAAGTACCTGGTGCAAA----------------------------------------------- | 19 | - | - | - | 1 | |
| ------------GTCTCTAGAAGTACCTGGTG--------------------------------------------------- | 20 | - | - | - | 1 | |
| -----------------TAGAAGTACCTGGTGCAAAAG--------------------------------------------- | 21 | - | - | - | 1 | |
| ---TCTCCATCTGTCTCTAGAAG------------------------------------------------------------ | 20 | - | - | - | 1 | |
| -------CATCTGTCTCTAGAAGTACCTGGTG--------------------------------------------------- | 25 | - | - | - | 1 | |
| rat | TGTTCTCCATCTGTCTCTAGAAGTACCTGGTGCAAAAGGcctgtgcaaagtTCGCATGATGTACGTTTATGCAGAGGAGTTGT | |||||
| *********************************************************************************** | ||||||
| rat | ....((((.(((((...((((.((((...((((.((..((....))....)).))))...)))).)))).))))))))).... | 0.730 -20.70 | ||||
| rat | chromosome:6:122575288:122575370:-1 | intergenic |
sblock11231 [novel_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.029 | no | no | 0.35/0.50 | 18/23/0.89 | 1.3 0.0 0.0 0.0 | 1.3 0.0 0.0 0.0 | 3 1 10 2 | 0 0 0 0 | 1 1 4 1 | 0 0 0 0 | 0 11 24 30 | 27 17 7 3 | 5arm 5arm 5arm 3arm | 9 9 9 14 | nd nd nd nd | 0.25 0.35 0.50 0.39 | 2 3 4 4 | 19 | 4 | -1 | -4 |
| reads | miRBase family seed | |||||
| seed | -------------------------ACCAUUU------------------------------------------------------------------------------- | 13 | novel | |||
| seed | ----------------------------------------------------------------ACCUAGG---------------------------------------- | 2 | novel | |||
| seed | -UGAUGAA------------------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ------------CCCAUAC-------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----GAACACU--------------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| ------------------------TACCATTTCATTTCCTACTG------------------------------------------------------------------- | 20 | 1 | 1 | 1 | 10 | |
| GTGATGAACACTCCCATACA------------------------------------------------------------------------------------------- | 20 | - | - | - | 2 | |
| ---------------------------------------------------------------GACCTAGGTTCTTGGAAG------------------------------ | 18 | - | - | - | 2 | |
| -----------TCCCATACAAGCATACCATTTCA----------------------------------------------------------------------------- | 23 | - | - | - | 1 | |
| ----TGAACACTCCCATACAAGCA--------------------------------------------------------------------------------------- | 20 | - | - | - | 1 | |
| rat | gtgatgaacactcccatacaagcaTACCATTTCATTTCCTACTGtgtcctccctgctttagaggacctaggttcttggaagatatgggtgggtggggggttgtggtttatc | |||||
| *************************************************************************************************************** | ||||||
| rat | ..(((((((.((((((..((..((((...(((((...((((....((((((.........)))))).))))....)))))..))))..))..))))))......))))))) | 0.970 -36.20 | ||||
| rat | chromosome:7:18840054:18840164:1 | intergenic |
sblock11761 [novel_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.087 | no | no | 0.39/0.52 | 18/26/0.76 | 0.8 0.0 1.2 0.0 | 1.3 0.0 0.8 1.1 | 9 1 5 7 | 0 0 0 0 | 4 1 1 3 | 0 0 0 0 | 1 32 23 14 | 20 -9 12 23 | 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.26 0.20 0.40 0.20 | 3 5 6 2 | 25 | 5 | -13 | -12 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------------------------------------AGCAGCA------------------------------ | 10 | miR-15b/16/195/322/497 | ||||
| seed | ---CAUAGUC-------------------------------------------------------------------------------------------------------- | 6 | novel | ||||
| seed | ----------------------------------------------------------------------GACUUUU------------------------------------- | 3 | novel | ||||
| seed | ------AGUCAGA----------------------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | --UCAUAGU--------------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------------------CUGUGAC----------------------------------------- | 1 | novel | ||||
| seed | ---------------------------------UGCUGCU-------------------------------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------------------GUGACUU--------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------------TAGCAGCAGTGGAAATAGCT------------------ | 20 | 1 | - | - | 5 | - | |
| --TCATAGTCAGAGTCTCCTGT-------------------------------------------------------------------------------------------- | 20 | - | - | 1 | 3 | - | |
| ---------------------------------------------------------------------TGACTTTTAGCAGCAGTGGA------------------------- | 20 | - | - | - | 3 | - | |
| ----------------------------------------------------------------------------TAGCAGCAGTGGAAATAG-------------------- | 18 | - | - | 1 | 1 | - | |
| ----------------------------------------------------------------------------TAGCAGCAGTGGAAATAGCTAGAA-------------- | 24 | - | - | - | 2 | - | |
| --TCATAGTCAGAGTCTCCTGTTAT----------------------------------------------------------------------------------------- | 23 | - | - | - | 1 | - | |
| -------------------------------------------------------------------TGTGACTTTTAGCAGCAGTGGAAA----------------------- | 24 | - | - | - | 1 | - | |
| --------------------------------CTGCTGCTGCCCTTTTAACCCAAGA--------------------------------------------------------- | 25 | - | - | - | 1 | - | |
| -TTCATAGTCAGAGTCTCCTGT-------------------------------------------------------------------------------------------- | 21 | - | - | - | 1 | - | |
| -----------------------------------------------------------------CCTGTGACTTTTAGCAGCAGTGGAAA----------------------- | 26 | - | - | - | 1 | - | |
| -----TAGTCAGAGTCTCCTGTTATTCT-------------------------------------------------------------------------------------- | 23 | - | - | - | 1 | - | |
| -----TAGTCAGAGTCTCCTGTTA------------------------------------------------------------------------------------------ | 19 | - | - | - | - | 1 | |
| --TCATAGTCAGAGTCTCCTG--------------------------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | |
| rat | ttTCATAGTCAGAGTCTCCTGTtattctagggctgctgctgcccttttaacccaagagtggtggacctgTGACTTTTAGCAGCAGTGGAAATAGCTAGAAttgacacatgagga | ||||||
| ****************************************************************************************************************** | |||||||
| rat | ((((((.(((((..(((...(((((((((..(((((((((((((((((.....))))).)))))............)))))))..))))).)))).))).)))))..)))))). | 0.950 -33.00 | |||||
| rat | chromosome:8:72057537:72057650:-1 | intergenic |
sblock12250 [novel_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.020 | no | no | 0.50/0.63 | 19/23/0.73 | 4.4 0.0 0.0 | 2.9 0.0 0.0 | 8 1 2 | 0 0 0 | 2 1 2 | 0 0 0 | 13 35 16 | 15 4 15 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.27 0.47 0.36 | 3 4 3 | 11 | 3 | -2 | -4 |
| reads | miRBase family seed | ||||
| seed | ---------------------GUCAGAA----------------------------------------------------------------------------------------- | 5 | novel | ||
| seed | --------------GGGCUAU------------------------------------------------------------------------------------------------ | 3 | novel | ||
| seed | --------------------------------------------------------------------------------CCUUUCC------------------------------ | 2 | novel | ||
| seed | ------------------------------------CAGUGCC-------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T3S1 | T5S1 | |||
| -------------------------------------------------------------------------------TCCTTTCCCACTGGGTACAGAG---------------- | 22 | - | 1 | 1 | |
| --------------------TGTCAGAAGGGTTCAGCAG------------------------------------------------------------------------------ | 19 | 1 | - | 1 | |
| -------------TGGGCTATGTCAGAAGGGTTCAG--------------------------------------------------------------------------------- | 23 | - | - | 2 | |
| -------------TGGGCTATGTCAGAAGGGTTCA---------------------------------------------------------------------------------- | 22 | - | - | 1 | |
| --------------------TGTCAGAAGGGTTCAGCAGTGCC-------------------------------------------------------------------------- | 23 | - | - | 1 | |
| --------------------TGTCAGAAGGGTTCAGCAGT----------------------------------------------------------------------------- | 20 | - | - | 1 | |
| --------------------TGTCAGAAGGGTTCAGCAGTG---------------------------------------------------------------------------- | 21 | - | - | 1 | |
| -----------------------------------GCAGTGCCGTCTTCTGTGG--------------------------------------------------------------- | 19 | - | - | 1 | |
| rat | tccctgagggcacTGGGCTATGTCAGAAGGGTTCAGCAGTGCCGTCTTCTGTGGcgccttctgtggcgccactgacctcTCCTTTCCCACTGGGTACAGAGcttgtgccatctggac | ||||
| ********************************************************************************************************************* | |||||
| rat | (((..((.(((((.(((((.((((((..(((...((.((....(((....((((((((......)))))))).)))..)).))..))).)))...))).)))))))))).)).))). | 0.690 -47.70 | |||
| rat | chromosome:9:90632631:90632747:-1 | intergenic ## {Repeats: trf 17 25 0 class=trf} |
sblock5046 [novel_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.124 | no | no | 0.46/0.52 | 20/25/0.92 | 0.0 0.0 2.0 | 0.0 0.0 0.3 | 8 1 3 | 0 0 0 | 1 1 3 | 0 0 0 | 0 24 9 | 6 -19 9 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.25 0.68 0.52 | 2 6 11 | 12 | 3 | 0 | -12 |
| reads | miRBase family seed | ||||
| seed | -AGACUGA---------------------------------------------------------------------- | 8 | novel | ||
| seed | -------------------------------------------------UCUCUAA---------------------- | 2 | novel | ||
| seed | ----------------------------------------------GACUCUC------------------------- | 1 | novel | ||
| seed | -------------------------AAGCAUU---------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S2 | T5S1 | |||
| TAGACTGAAGCCCTTGGAGAAACA------------------------------------------------------ | 24 | - | - | 8 | |
| ---------------------------------------------TGACTCTCTAATGCACACCACAG---------- | 23 | - | 1 | - | |
| ------------------------------------------------CTCTCTAATGCACACCACAG---------- | 20 | 1 | - | - | |
| ------------------------------------------------CTCTCTAATGCACACCACAGG--------- | 21 | - | - | 1 | |
| ------------------------TAAGCATTGAACTGACCCCCATGAC----------------------------- | 25 | - | - | 1 | |
| rat | TAGACTGAAGCCCTTGGAGAAACAtaagcattgaactgacccccatgactctctaatgcacaccacagggctctggta | ||||
| ****************************************************************************** | |||||
| rat | ...(((..((((((((((((..(((...((......))......)))..))))))...........))))))..))). | 0.700 -17.00 | |||
| rat | chromosome:17:17548706:17548783:-1 | intergenic |
sblock5302 [novel_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.023 | no | no | 0.32/0.52 | 19/24/0.73 | 0.0 1.3 2.0 0.0 | 0.0 0.6 0.0 0.0 | 1 7 2 1 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 1 6 27 18 | 15 3 -15 0 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 2 2 | nd nd nd nd | 0.26 0.15 0.37 0.16 | 2 2 5 2 | 11 | 2 | -2 | -5 |
| reads | miRBase family seed | |||
| seed | ------------CCAAUGA---------------------------------------------------------- | 4 | novel | |
| seed | ----------------------------CUCUACC------------------------------------------ | 1 | novel | |
| seed | --------------------------------ACCUCAG-------------------------------------- | 1 | novel | |
| seed | -------AUGUUCC--------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------GUGAUGU----------------------------- | 1 | miR-466c | |
| seed | ---------GUUCCAA------------------------------------------------------------- | 1 | novel | |
| seed | -------------CAAUGAU--------------------------------------------------------- | 1 | novel | |
| seed | --UGAUGAU-------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------TCCAATGATTTAATGAGCTCT--------------------------------------------- | 21 | 1 | 3 | |
| ---------------------------GCTCTACCTCAGAGGTGATGTCA--------------------------- | 23 | - | 1 | |
| ------GATGTTCCAATGATTTAATGAG------------------------------------------------- | 22 | - | 1 | |
| --------TGTTCCAATGATTTAATGAGCTCT--------------------------------------------- | 24 | - | 1 | |
| -------------------------------TACCTCAGAGGTGATGTCA--------------------------- | 19 | - | 1 | |
| ------------CCAATGATTTAATGAGCTCT--------------------------------------------- | 20 | - | 1 | |
| ----------------------------------------GGTGATGTCATTCAGGTCA------------------ | 19 | - | 1 | |
| -TTGATGATGTTCCAATGAT--------------------------------------------------------- | 19 | 1 | - | |
| rat | tTTGATGATGTTCCAATGATTTAATGAGCTCTACCTCAGAGGTGATGTCATTCAGGTCAttgttgctcttctccagg | |||
| ***************************************************************************** | ||||
| rat | .(((..((.((..((((((((((((((..((.(((.....)))))..))))).)))))))))..))...))..))). | 1.000 -20.80 | ||
| rat | chromosome:17:20767724:20767800:1 | intergenic |
sblock617 [novel_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.749 | no | no | 0.40/0.52 | 19/26/0.86 | 0.0 0.0 0.0 1.1 0.0 | 0.0 0.0 0.0 2.5 2.5 | 2 1 1 11 4 | 0 0 0 0 0 | 1 1 1 6 1 | 0 0 0 0 0 | 24 34 38 14 0 | -4 -11 -19 4 19 | 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm | 1 1 2 2 2 | nd nd nd nd nd | 0.64 0.58 0.39 0.30 0.38 | 5 5 5 2 5 | 29 | 6 | 11 | 0 |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------------------------CCCACAU------------------------------ | 16 | novel | |||||
| seed | -------------------------------------------------------------------ACCAUUU------------------ | 4 | novel | |||||
| seed | ----------------------------------------------------AAUCCCA--------------------------------- | 4 | novel | |||||
| seed | -------------------------CCUGGAG------------------------------------------------------------ | 2 | novel | |||||
| seed | -----------------------------------GAAAAGG-------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------CCACAUC----------------------------- | 1 | novel | |||||
| seed | ---------------------------------------AGGCACA---------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------TCCCACATCCAATACCATTTCTGT-------------- | 24 | 1 | 1 | 1 | 1 | 7 | 1 | |
| ---------------------------------------------------TAATCCCACATCCAATACCA--------------------- | 20 | - | - | - | - | 4 | - | |
| ------------------------------------------------------TCCCACATCCAATACCATTTCT---------------- | 22 | - | - | - | 1 | 1 | - | |
| ------------------------------------------------------------------TACCATTTCTGTACCTGGAGA----- | 21 | - | - | - | - | 2 | - | |
| ------------------------------------------------------------------TACCATTTCTGTACCTGGAGAGAGAC | 26 | - | - | - | - | 2 | - | |
| ------------------------TCCTGGAGTTTGAAAAGGCACA---------------------------------------------- | 22 | 2 | - | - | - | - | - | |
| -------------------------------------------------------CCCACATCCAATACCATTTCTGT-------------- | 23 | - | - | - | - | 1 | - | |
| --------------------------------------AAGGCACACCCTGTAATCCCACA------------------------------- | 23 | - | - | - | - | 1 | - | |
| ------------------------------------------------------TCCCACATCCAATACCATTTCTG--------------- | 23 | 1 | - | - | - | - | - | |
| ----------------------------------TGAAAAGGCACACCCTGTA--------------------------------------- | 19 | - | - | - | - | 1 | - | |
| ------------------------------------------------------TCCCACATCCAATACCATT------------------- | 19 | - | - | - | - | 1 | - | |
| rat | ctctgtatgcacggttttagatgctcctggagtttgaaaaggcacaccctgTAATCCCACATCCAATACCATTTCTGTacctggagagagac | |||||||
| ******************************************************************************************** | ||||||||
| rat | ((((.((((((.(((.((.((((....(((..((.....(((.....)))..))..))))))).)).))).....))))..)).)))).... | 0.460 -15.60 | ||||||
| rat | chromosome:1:102925481:102925572:-1 | intergenic |
sblock673 [novel_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.238 | no | no | 0.38/0.58 | 19/23/0.80 | 0.0 1.3 0.0 | 0.0 0.0 1.6 | 2 3 5 | 0 0 0 | 1 2 1 | 0 0 0 | 0 9 8 | 18 7 2 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.24 0.29 0.18 | 3 3 3 | 10 | 2 | -13 | -12 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------GCCAGUA---------------------- | 5 | novel | |
| seed | ------------ACUUCUU--------------------------------------------------------- | 2 | novel | |
| seed | -GGACAGG-------------------------------------------------------------------- | 2 | novel | |
| seed | ----------CUACUUC----------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------TACTTCTTCATTCAGTCCAGT-------------------------------------------- | 21 | 1 | 1 | |
| ----------------------------------------------TGCCAGTAGGAGATGACGGAGT-------- | 22 | - | 2 | |
| TGGACAGGCTCTACTTCTTCA------------------------------------------------------- | 21 | - | 2 | |
| ----------------------------------------------TGCCAGTAGGAGATGACGG----------- | 19 | - | 2 | |
| ----------------------------------------------TGCCAGTAGGAGATGACGGAG--------- | 21 | - | 1 | |
| ---------TCTACTTCTTCATTCAGTCCAGT-------------------------------------------- | 23 | - | 1 | |
| rat | TGGACAGGCTCTACTTCTTCATTCAGTCCAGTacctagaaagaatcTGCCAGTAGGAGATGACGGAGTaatctgtt | |||
| **************************************************************************** | ||||
| rat | ..((((((...((((((.(((((...(((..(((.((((.....))))...))))))))))).)))))).)))))) | 0.890 -17.70 | ||
| rat | chromosome:1:124837007:124837082:-1 | intergenic |
sblock7929 [novel_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.029 | no | no | 0.35/0.57 | 18/25/0.80 | 4.7 0.0 0.0 0.0 | 3.7 0.0 0.0 1.3 | 3 1 8 3 | 0 0 0 0 | 1 1 3 1 | 0 0 0 0 | 16 43 32 14 | 9 -11 3 20 | 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.35 0.56 0.27 0.26 | 4 5 3 3 | 25 | 3 | -7 | -8 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------GUGUGCU---------------------------------------------- | 12 | novel | ||
| seed | ------------------------------------------------------------------UGUGCUC--------------------------------------------- | 4 | novel | ||
| seed | ----------------------------------------------------------------------------------AGACGAA----------------------------- | 3 | novel | ||
| seed | -----------------ACCUUCU---------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------CAGAGCA------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------CUUCAAA----------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------AAAAUCU------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------UGUGUGC----------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------GUGCUCA-------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------------------------------------------------------------TGTGTGCTCACGGGGTTTAGAC-------------------------------- | 22 | 1 | - | 8 | |
| -----------------------------------------------------------------GTGTGCTCACGGGGTTTA----------------------------------- | 18 | 1 | - | 2 | |
| ---------------------------------------------------------------------------------TAGACGAAGGGAAGAAGAGGTGG-------------- | 23 | - | - | 2 | |
| ----------------------------------------------------------------TGTGTGCTCACGGGGTTTAGA--------------------------------- | 21 | - | - | 1 | |
| ----------------------------------------------------------------TGTGTGCTCACGGGGTTTAGACG------------------------------- | 23 | - | - | 1 | |
| -------------------------------------------CCAGAGCAAAGTCTGAGAGGTTGTG-------------------------------------------------- | 25 | - | - | 1 | |
| ---------------------------------------------------------------------------------TAGACGAAGGGAAGAAGAG------------------ | 19 | - | - | 1 | |
| ----------------AACCTTCTTCAAAATCTCTCTGA------------------------------------------------------------------------------- | 23 | - | - | 1 | |
| ----------------------------------------------------------------TGTGTGCTCACGGGGTTTAG---------------------------------- | 20 | - | 1 | - | |
| ------------------------------------------------------------------TGTGCTCACGGGGTTTAGAC-------------------------------- | 20 | - | - | 1 | |
| ---------------------------------------------------------------TTGTGTGCTCACGGGGTTTA----------------------------------- | 20 | - | - | 1 | |
| -------------------------CAAAATCTCTCTGATGCTCCAGA---------------------------------------------------------------------- | 23 | - | - | 1 | |
| -----------------------------------------------------------------GTGTGCTCACGGGGTTTAGAC-------------------------------- | 21 | - | - | 1 | |
| ---------------------TCTTCAAAATCTCTCTGATG----------------------------------------------------------------------------- | 20 | - | - | 1 | |
| rat | ttttccattctccacgaaccttcttcaaaatctctctgatgctccagagcaaagtctgagaggtTGTGTGCTCACGGGGTTTAGACgaagggaagaagaggtgggaagccatggagag | ||||
| ********************************************************************************************************************** | |||||
| rat | .(((((((((.((((....(((((((....((..(((((.(((((.(((((....((....)).....)))))..)))))))))).))...)))))))..))))))....))))))). | 0.560 -40.20 | |||
| rat | chromosome:3:76932500:76932617:1 | intergenic |
sblock9080 [novel_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.204 | no | no | 0.26/0.45 | 19/25/0.75 | 0.0 0.0 0.0 0.0 1.7 | 0.0 0.0 0.0 1.5 0.3 | 2 1 1 2 10 | 0 0 0 0 0 | 2 1 1 1 3 | 0 0 0 0 0 | 5 16 29 22 10 | 23 14 4 14 25 | 5arm 5arm 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.29 0.14 0.52 0.32 0.24 | 3 2 7 6 3 | 16 | 4 | 4 | 4 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------------------------------ACAAGUU---------------------- | 5 | novel | |||
| seed | --------------------------------------------------------------------------------------UGUACAA------------------------- | 3 | novel | |||
| seed | ---------------------------------------------------------------------------------------GUACAAG------------------------ | 2 | novel | |||
| seed | ---------------------------------------------------------------------------AGUUGUU------------------------------------ | 2 | novel | |||
| seed | ------UUGAUUC--------------------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------GACACUU---------------------------------------------- | 1 | novel | |||
| seed | -----------------CUCCAGA---------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| -------------------------------------------------------------------------------------TTGTACAAGTTTGGAAGGTCTG----------- | 22 | 1 | - | - | 2 | |
| ----------------------------------------------------------------------------------------TACAAGTTTGGAAGGTCTGA---------- | 20 | - | 1 | - | 2 | |
| ----------------------------------------------------------------------------------------TACAAGTTTGGAAGGTCTG----------- | 19 | - | - | - | 2 | |
| -----TTTGATTCTCTTCTCCAGACTTTT----------------------------------------------------------------------------------------- | 24 | - | 1 | - | 1 | |
| --------------------------------------------------------------------------------------TGTACAAGTTTGGAAGGTCTG----------- | 21 | - | - | - | 2 | |
| --------------------------------------------------------------------------TAGTTGTTTTCTTGTACAA------------------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------------TGACACTTTTTAGTTGTTTTCTTGT----------------------------- | 25 | - | - | 1 | - | |
| ----------------TCTCCAGACTTTTTGCCACAAC-------------------------------------------------------------------------------- | 22 | - | - | - | 1 | |
| --------------------------------------------------------------------------TAGTTGTTTTCTTGTACAAGTT---------------------- | 22 | - | - | - | 1 | |
| rat | ggctgTTTGATTCTCTTCTCCAGACTTTTTGCCACAACtccctgagtcttgctttaaattgtccTGACACTTTTTAGTTGTTTTCTTGTACAAGTTTGGAAGGTCTGAataggtagtt | |||||
| ********************************************************************************************************************** | ||||||
| rat | .((((..((.(((...(((((((((((..(((.((((((......(((..((........))...))).......))))))......))).))))))))).))...)))))..)))). | 0.650 -23.12 | ||||
| rat | chromosome:4:164252745:164252862:1 | intergenic |
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