other hairpins
novel_cloningOK_multiarm_DicerNOK_5varHIGH (11 loci)
sblock9132 [novel_cloningOK_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.024 | no | no | 0.30/0.48 | 19/24/0.80 | 0.0 0.4 1.5 0.0 | 0.0 0.6 0.0 0.0 | 1 5 2 2 | 0 0 0 0 | 1 3 1 1 | 0 0 0 0 | 0 28 11 6 | 52 21 9 19 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 1.00 0.29 0.17 0.26 | 20 3 2 3 | 10 | 3 | 4 | 1 |
| reads | miRBase family seed | ||||
| seed | -----------------------------AUGUCGA----------------------------------------------------------------------------------- | 4 | novel | ||
| seed | -----------------------------------------------------------------------------------------------AUCUAGA----------------- | 2 | novel | ||
| seed | ----------------------------------------------------------------------------------------CCAGCAU------------------------ | 1 | miR-338 | ||
| seed | -------------------------------------------------------------------------------------CAGCCAG--------------------------- | 1 | novel | ||
| seed | -------------------------------GUCGAUG--------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -UGGAAUA--------------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S2 | T5S1 | T5S2 | |||
| ----------------------------TATGTCGATGTCTCAGGTCTTTG-------------------------------------------------------------------- | 23 | - | 2 | 1 | |
| ----------------------------------------------------------------------------------------------TATCTAGACAAAGATTCTG------ | 19 | - | 2 | - | |
| TTGGAATAATTAGGTCTTTG--------------------------------------------------------------------------------------------------- | 20 | - | 1 | - | |
| ------------------------------TGTCGATGTCTCAGGTCTTTG-------------------------------------------------------------------- | 21 | 1 | - | - | |
| ----------------------------TATGTCGATGTCTCAGGTCT----------------------------------------------------------------------- | 20 | - | 1 | - | |
| ------------------------------------------------------------------------------------GCAGCCAGCATATCTAGACAAAGA----------- | 24 | - | 1 | - | |
| ---------------------------------------------------------------------------------------GCCAGCATATCTAGACAAAGA----------- | 21 | - | 1 | - | |
| rat | TTGGAATAATTAGGTCTTTGcagtaggcTATGTCGATGTCTCAGGTCTTTGcccacaggctgaccctttagctcagctaacccaGCAGCCAGCATATCTAGACAAAGATTCTGcctgct | ||||
| *********************************************************************************************************************** | |||||
| rat | .....................(((((((...(((..(((((.((((...(((.....(((((.....(((((...))))).....))))).))).)))))))))..)))...))))))) | 0.710 -35.90 | |||
| rat | chromosome:4:164274323:164274441:1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH (11 loci)
sblock1392 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.607 | no | no | 0.35/0.50 | 19/24/0.95 | 4.0 1.5 0.0 | 1.9 3.5 0.0 | 9 2 6 | 0 0 0 | 3 1 3 | 0 0 0 | 10 43 27 | 8 -21 1 | 5arm 5arm_loop_3arm 3arm | 39 46 46 | nd nd nd | 0.18 0.62 0.55 | 2 8 8 | 19 | 5 | -17 | -21 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------AAAUCAG--------------------------------------- | 8 | novel | ||||
| seed | -------------GUCUAUG---------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -----------GUGUCUA------------------------------------------------------------------------------------ | 3 | novel | ||||
| seed | ----------------------GUGUUCA------------------------------------------------------------------------- | 2 | miR-124* | ||||
| seed | -------------------GUUGUGU---------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------CCUAGAG------------------------------------------------ | 1 | novel | ||||
| seed | --------------------------------------------AGUCCUA--------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGA--------------------------- | 20 | - | 1 | - | 6 | - | |
| ----------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 24 | - | - | - | 3 | - | |
| ------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 22 | - | - | - | 3 | - | |
| ----------------------------------------------TCCTAGAGGGAAATCAGCAAGGGT-------------------------------- | 24 | - | - | - | 1 | - | |
| ---------------------TGTGTTCACTTCTATTCCTA------------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| ------------------TGTTGTGTTCACTTCTATTC---------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGAAT------------------------- | 22 | 1 | - | - | - | - | |
| ---------------------TGTGTTCACTTCTATTCCT-------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| -------------------------------------------TAGTCCTAGAGGGAAATCAG--------------------------------------- | 20 | - | - | - | 1 | - | |
| rat | aggagaacaaTGTGTCTATGTTGTGTTCACTTCTattcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAatgggaccgtaactggacaaagctgct | ||||||
| ****************************************************************************************************** | |||||||
| rat | ((.((.......((((((.(((((((((..((((..((((......(((.....)))........))))...))))..)))).)))))))))))...)).)) | 0.980 -21.64 | |||||
| rat | chromosome:1:51023468:51023569:1 | intergenic |
sblock1443 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.607 | no | no | 0.35/0.50 | 19/24/0.95 | 4.0 1.5 0.0 | 1.9 3.5 0.0 | 9 2 6 | 0 0 0 | 3 1 3 | 0 0 0 | 10 43 27 | 8 -21 1 | 5arm 5arm_loop_3arm 3arm | 39 46 46 | nd nd nd | 0.18 0.62 0.55 | 2 8 8 | 19 | 5 | -17 | -21 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------AAAUCAG--------------------------------------- | 8 | novel | ||||
| seed | -------------GUCUAUG---------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -----------GUGUCUA------------------------------------------------------------------------------------ | 3 | novel | ||||
| seed | ----------------------GUGUUCA------------------------------------------------------------------------- | 2 | miR-124* | ||||
| seed | -------------------GUUGUGU---------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------CCUAGAG------------------------------------------------ | 1 | novel | ||||
| seed | --------------------------------------------AGUCCUA--------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGA--------------------------- | 20 | - | 1 | - | 6 | - | |
| ----------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 24 | - | - | - | 3 | - | |
| ------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 22 | - | - | - | 3 | - | |
| ----------------------------------------------TCCTAGAGGGAAATCAGCAAGGGT-------------------------------- | 24 | - | - | - | 1 | - | |
| ---------------------TGTGTTCACTTCTATTCCTA------------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| ------------------TGTTGTGTTCACTTCTATTC---------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGAAT------------------------- | 22 | 1 | - | - | - | - | |
| ---------------------TGTGTTCACTTCTATTCCT-------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| -------------------------------------------TAGTCCTAGAGGGAAATCAG--------------------------------------- | 20 | - | - | - | 1 | - | |
| rat | aggagaacaaTGTGTCTATGTTGTGTTCACTTCTattcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAatgggaccgtaactggacaaagctgct | ||||||
| ****************************************************************************************************** | |||||||
| rat | ((.((.......((((((.(((((((((..((((..((((......(((.....)))........))))...))))..)))).)))))))))))...)).)) | 0.980 -21.64 | |||||
| rat | chromosome:1:51421934:51422035:1 | intergenic |
sblock1467 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.607 | no | no | 0.35/0.50 | 19/24/0.95 | 4.0 1.5 0.0 | 1.9 3.5 0.0 | 9 2 6 | 0 0 0 | 3 1 3 | 0 0 0 | 10 43 27 | 8 -21 1 | 5arm 5arm_loop_3arm 3arm | 39 46 46 | nd nd nd | 0.18 0.62 0.55 | 2 8 8 | 19 | 5 | -17 | -21 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------AAAUCAG--------------------------------------- | 8 | novel | ||||
| seed | -------------GUCUAUG---------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -----------GUGUCUA------------------------------------------------------------------------------------ | 3 | novel | ||||
| seed | ----------------------GUGUUCA------------------------------------------------------------------------- | 2 | miR-124* | ||||
| seed | -------------------GUUGUGU---------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------CCUAGAG------------------------------------------------ | 1 | novel | ||||
| seed | --------------------------------------------AGUCCUA--------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGA--------------------------- | 20 | - | 1 | - | 6 | - | |
| ----------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 24 | - | - | - | 3 | - | |
| ------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 22 | - | - | - | 3 | - | |
| ----------------------------------------------TCCTAGAGGGAAATCAGCAAGGGT-------------------------------- | 24 | - | - | - | 1 | - | |
| ---------------------TGTGTTCACTTCTATTCCTA------------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| ------------------TGTTGTGTTCACTTCTATTC---------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGAAT------------------------- | 22 | 1 | - | - | - | - | |
| ---------------------TGTGTTCACTTCTATTCCT-------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| -------------------------------------------TAGTCCTAGAGGGAAATCAG--------------------------------------- | 20 | - | - | - | 1 | - | |
| rat | aggagaacaaTGTGTCTATGTTGTGTTCACTTCTattcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAatgggaccgtaactggacaaagctgct | ||||||
| ****************************************************************************************************** | |||||||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| rat | ((.((.......((((((.(((((((((..((((..((((......(((.....)))........))))...))))..)))).)))))))))))...)).)) | 0.980 -21.64 | |||||
| rat | chromosome:1:51536662:51536763:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1474 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.238 | no | no | 0.35/0.50 | 19/24/0.95 | 4.0 1.5 0.0 | 1.9 3.5 0.0 | 9 2 6 | 0 0 0 | 3 1 3 | 0 0 0 | 18 51 33 | 8 -21 1 | 5arm 5arm_loop_3arm 3arm | 39 46 46 | nd nd nd | 0.18 0.62 0.55 | 2 8 8 | 19 | 5 | -17 | -21 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------------------------------------AAAUCAG--------------------------------------------- | 8 | novel | ||||
| seed | ---------------------GUCUAUG---------------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -------------------GUGUCUA------------------------------------------------------------------------------------------ | 3 | novel | ||||
| seed | ------------------------------GUGUUCA------------------------------------------------------------------------------- | 2 | miR-124* | ||||
| seed | ---------------------------GUUGUGU---------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------AGUCCUA--------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------------------------CCUAGAG------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------GAAATCAGCAAGGGTAGAGA--------------------------------- | 20 | - | 1 | - | 6 | - | |
| --------------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------------- | 22 | - | - | - | 3 | - | |
| ------------------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------------- | 24 | - | - | - | 3 | - | |
| ------------------------------------------------------TCCTAGAGGGAAATCAGCAAGGGT-------------------------------------- | 24 | - | - | - | 1 | - | |
| --------------------------TGTTGTGTTCACTTCTATTC---------------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -----------------------------TGTGTTCACTTCTATTCCTA------------------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| -----------------------------TGTGTTCACTTCTATTCCT-------------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| ---------------------------------------------------TAGTCCTAGAGGGAAATCAG--------------------------------------------- | 20 | - | - | - | 1 | - | |
| ---------------------------------------------------------------GAAATCAGCAAGGGTAGAGAAT------------------------------- | 22 | 1 | - | - | - | - | |
| rat | ggaagatgaggagaacaaTGTGTCTATGTTGTGTTCACTTCTattcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAatgggaccataactggacaaagctgctgagcct | ||||||
| ******************************************************************************************************************** | |||||||
| ------------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| rat | ((......((.((.......((((((.(((((((((..((((..((((......(((.....)))........))))...))))..)))).)))))))))))...)).))...)). | 0.740 -26.54 | |||||
| rat | chromosome:1:51538531:51538646:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1565 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.607 | no | no | 0.35/0.50 | 19/24/0.95 | 4.0 1.5 0.0 | 1.9 3.5 0.0 | 9 2 6 | 0 0 0 | 3 1 3 | 0 0 0 | 10 43 27 | 8 -21 1 | 5arm 5arm_loop_3arm 3arm | 39 46 46 | nd nd nd | 0.18 0.62 0.55 | 2 8 8 | 19 | 5 | -17 | -21 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------AAAUCAG--------------------------------------- | 8 | novel | ||||
| seed | -------------GUCUAUG---------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -----------GUGUCUA------------------------------------------------------------------------------------ | 3 | novel | ||||
| seed | ----------------------GUGUUCA------------------------------------------------------------------------- | 2 | miR-124* | ||||
| seed | -------------------GUUGUGU---------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------CCUAGAG------------------------------------------------ | 1 | novel | ||||
| seed | --------------------------------------------AGUCCUA--------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGA--------------------------- | 20 | - | 1 | - | 6 | - | |
| ----------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 24 | - | - | - | 3 | - | |
| ------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 22 | - | - | - | 3 | - | |
| ----------------------------------------------TCCTAGAGGGAAATCAGCAAGGGT-------------------------------- | 24 | - | - | - | 1 | - | |
| ---------------------TGTGTTCACTTCTATTCCTA------------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| ------------------TGTTGTGTTCACTTCTATTC---------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGAAT------------------------- | 22 | 1 | - | - | - | - | |
| ---------------------TGTGTTCACTTCTATTCCT-------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| -------------------------------------------TAGTCCTAGAGGGAAATCAG--------------------------------------- | 20 | - | - | - | 1 | - | |
| rat | aggagaacaaTGTGTCTATGTTGTGTTCACTTCTattcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAatgggaccgtaactggacaaagctgct | ||||||
| ****************************************************************************************************** | |||||||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||||||
| rat | ((.((.......((((((.(((((((((..((((..((((......(((.....)))........))))...))))..)))).)))))))))))...)).)) | 0.980 -21.64 | |||||
| rat | chromosome:1:51999830:51999931:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock228 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.167 | no | no | 0.35/0.50 | 19/24/0.95 | 4.0 1.5 0.0 | 1.9 3.5 0.0 | 9 2 6 | 0 0 0 | 3 1 3 | 0 0 0 | 10 43 27 | 8 -21 1 | 5arm 5arm_loop_3arm 3arm | 39 46 46 | nd nd nd | 0.18 0.62 0.55 | 2 8 8 | 19 | 5 | -17 | -21 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------AAAUCAG--------------------------------------- | 8 | novel | ||||
| seed | -------------GUCUAUG---------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -----------GUGUCUA------------------------------------------------------------------------------------ | 3 | novel | ||||
| seed | ----------------------GUGUUCA------------------------------------------------------------------------- | 2 | miR-124* | ||||
| seed | -------------------GUUGUGU---------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------CCUAGAG------------------------------------------------ | 1 | novel | ||||
| seed | --------------------------------------------AGUCCUA--------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGA--------------------------- | 20 | - | 1 | - | 6 | - | |
| ----------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 24 | - | - | - | 3 | - | |
| ------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 22 | - | - | - | 3 | - | |
| ----------------------------------------------TCCTAGAGGGAAATCAGCAAGGGT-------------------------------- | 24 | - | - | - | 1 | - | |
| ---------------------TGTGTTCACTTCTATTCCTA------------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| ------------------TGTTGTGTTCACTTCTATTC---------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGAAT------------------------- | 22 | 1 | - | - | - | - | |
| ---------------------TGTGTTCACTTCTATTCCT-------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| -------------------------------------------TAGTCCTAGAGGGAAATCAG--------------------------------------- | 20 | - | - | - | 1 | - | |
| rat | aggagaacaaTGTGTCTATGTTGTGTTCACTTCTattcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAatgtgtccgtaactggacaaagctgct | ||||||
| ****************************************************************************************************** | |||||||
| rat | ((.((.......((((((.((((((..(((((((..((((......(((.....)))........))))...)))).)))..))))))))))))...)).)) | 0.900 -25.44 | |||||
| rat | chromosome:1:49952487:49952588:-1 | intergenic |
sblock251 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.607 | no | no | 0.35/0.50 | 19/24/0.95 | 4.0 1.5 0.0 | 1.9 3.5 0.0 | 9 2 6 | 0 0 0 | 3 1 3 | 0 0 0 | 10 43 27 | 8 -21 1 | 5arm 5arm_loop_3arm 3arm | 39 46 46 | nd nd nd | 0.18 0.62 0.55 | 2 8 8 | 19 | 5 | -17 | -21 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------AAAUCAG--------------------------------------- | 8 | novel | ||||
| seed | -------------GUCUAUG---------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -----------GUGUCUA------------------------------------------------------------------------------------ | 3 | novel | ||||
| seed | ----------------------GUGUUCA------------------------------------------------------------------------- | 2 | miR-124* | ||||
| seed | -------------------GUUGUGU---------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------CCUAGAG------------------------------------------------ | 1 | novel | ||||
| seed | --------------------------------------------AGUCCUA--------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGA--------------------------- | 20 | - | 1 | - | 6 | - | |
| ----------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 24 | - | - | - | 3 | - | |
| ------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 22 | - | - | - | 3 | - | |
| ----------------------------------------------TCCTAGAGGGAAATCAGCAAGGGT-------------------------------- | 24 | - | - | - | 1 | - | |
| ---------------------TGTGTTCACTTCTATTCCTA------------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| ------------------TGTTGTGTTCACTTCTATTC---------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGAAT------------------------- | 22 | 1 | - | - | - | - | |
| ---------------------TGTGTTCACTTCTATTCCT-------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| -------------------------------------------TAGTCCTAGAGGGAAATCAG--------------------------------------- | 20 | - | - | - | 1 | - | |
| rat | aggagaacaaTGTGTCTATGTTGTGTTCACTTCTattcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAatgggaccgtaactggacaaagctgct | ||||||
| ****************************************************************************************************** | |||||||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000049496 ENSRNOG00000031160 LOC685793 | ||||||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000042408 ENSRNOG00000031160 LOC685793 | ||||||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000050327 ENSRNOG00000031160 LOC685793 | ||||||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000040838 ENSRNOG00000031160 LOC685793 | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000059958 ENSRNOG00000030545 LOC685793 | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049483 ENSRNOG00000030545 LOC685793 | ||||||
| rat | ((.((.......((((((.(((((((((..((((..((((......(((.....)))........))))...))))..)))).)))))))))))...)).)) | 0.980 -21.64 | |||||
| rat | chromosome:1:50132442:50132543:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000049483|ENSRNOG00000030545 ## Same_strand|Intronic_coding|ENSRNOT00000059958|ENSRNOG00000030545 ## Same_strand|Boundary_non-coding|ENSRNOT00000039913|ENSRNOG00000030545 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000042408|ENSRNOG00000031160 ## ENSRNOG00000030545|protein_coding|LOC685793| ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock274 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.607 | no | no | 0.35/0.50 | 19/24/0.95 | 4.0 1.5 0.0 | 1.9 3.5 0.0 | 9 2 6 | 0 0 0 | 3 1 3 | 0 0 0 | 10 43 27 | 8 -21 1 | 5arm 5arm_loop_3arm 3arm | 39 46 46 | nd nd nd | 0.18 0.62 0.55 | 2 8 8 | 19 | 5 | -17 | -21 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------AAAUCAG--------------------------------------- | 8 | novel | ||||
| seed | -------------GUCUAUG---------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -----------GUGUCUA------------------------------------------------------------------------------------ | 3 | novel | ||||
| seed | ----------------------GUGUUCA------------------------------------------------------------------------- | 2 | miR-124* | ||||
| seed | -------------------GUUGUGU---------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------CCUAGAG------------------------------------------------ | 1 | novel | ||||
| seed | --------------------------------------------AGUCCUA--------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGA--------------------------- | 20 | - | 1 | - | 6 | - | |
| ----------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 24 | - | - | - | 3 | - | |
| ------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 22 | - | - | - | 3 | - | |
| ----------------------------------------------TCCTAGAGGGAAATCAGCAAGGGT-------------------------------- | 24 | - | - | - | 1 | - | |
| ---------------------TGTGTTCACTTCTATTCCTA------------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| ------------------TGTTGTGTTCACTTCTATTC---------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGAAT------------------------- | 22 | 1 | - | - | - | - | |
| ---------------------TGTGTTCACTTCTATTCCT-------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| -------------------------------------------TAGTCCTAGAGGGAAATCAG--------------------------------------- | 20 | - | - | - | 1 | - | |
| rat | aggagaacaaTGTGTCTATGTTGTGTTCACTTCTattcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAatgggaccgtaactggacaaagctgct | ||||||
| ****************************************************************************************************** | |||||||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | ||||||
| rat | ((.((.......((((((.(((((((((..((((..((((......(((.....)))........))))...))))..)))).)))))))))))...)).)) | 0.980 -21.64 | |||||
| rat | chromosome:1:50180556:50180657:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock370 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.607 | no | no | 0.35/0.50 | 19/24/0.95 | 4.0 1.5 0.0 | 1.9 3.5 0.0 | 9 2 6 | 0 0 0 | 3 1 3 | 0 0 0 | 10 43 27 | 8 -21 1 | 5arm 5arm_loop_3arm 3arm | 39 46 46 | nd nd nd | 0.18 0.62 0.55 | 2 8 8 | 19 | 5 | -17 | -21 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------AAAUCAG--------------------------------------- | 8 | novel | ||||
| seed | -------------GUCUAUG---------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -----------GUGUCUA------------------------------------------------------------------------------------ | 3 | novel | ||||
| seed | ----------------------GUGUUCA------------------------------------------------------------------------- | 2 | miR-124* | ||||
| seed | -------------------GUUGUGU---------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------CCUAGAG------------------------------------------------ | 1 | novel | ||||
| seed | --------------------------------------------AGUCCUA--------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGA--------------------------- | 20 | - | 1 | - | 6 | - | |
| ----------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 24 | - | - | - | 3 | - | |
| ------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 22 | - | - | - | 3 | - | |
| ----------------------------------------------TCCTAGAGGGAAATCAGCAAGGGT-------------------------------- | 24 | - | - | - | 1 | - | |
| ---------------------TGTGTTCACTTCTATTCCTA------------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| ------------------TGTTGTGTTCACTTCTATTC---------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGAAT------------------------- | 22 | 1 | - | - | - | - | |
| ---------------------TGTGTTCACTTCTATTCCT-------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| -------------------------------------------TAGTCCTAGAGGGAAATCAG--------------------------------------- | 20 | - | - | - | 1 | - | |
| rat | aggagaacaaTGTGTCTATGTTGTGTTCACTTCTattcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAatgggaccgtaactggacaaagctgct | ||||||
| ****************************************************************************************************** | |||||||
| rat | ((.((.......((((((.(((((((((..((((..((((......(((.....)))........))))...))))..)))).)))))))))))...)).)) | 0.980 -21.64 | |||||
| rat | chromosome:1:50787063:50787164:-1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 30960 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.