other hairpins
novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH (11 loci)
sblock375 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.607 | no | no | 0.35/0.50 | 19/24/0.95 | 4.0 1.5 0.0 | 1.9 3.5 0.0 | 9 2 6 | 0 0 0 | 3 1 3 | 0 0 0 | 10 43 27 | 8 -21 1 | 5arm 5arm_loop_3arm 3arm | 39 46 46 | nd nd nd | 0.18 0.62 0.55 | 2 8 8 | 19 | 5 | -17 | -21 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------AAAUCAG--------------------------------------- | 8 | novel | ||||
| seed | -------------GUCUAUG---------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -----------GUGUCUA------------------------------------------------------------------------------------ | 3 | novel | ||||
| seed | ----------------------GUGUUCA------------------------------------------------------------------------- | 2 | miR-124* | ||||
| seed | -------------------GUUGUGU---------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------CCUAGAG------------------------------------------------ | 1 | novel | ||||
| seed | --------------------------------------------AGUCCUA--------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGA--------------------------- | 20 | - | 1 | - | 6 | - | |
| ----------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 24 | - | - | - | 3 | - | |
| ------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 22 | - | - | - | 3 | - | |
| ----------------------------------------------TCCTAGAGGGAAATCAGCAAGGGT-------------------------------- | 24 | - | - | - | 1 | - | |
| ---------------------TGTGTTCACTTCTATTCCTA------------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| ------------------TGTTGTGTTCACTTCTATTC---------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGAAT------------------------- | 22 | 1 | - | - | - | - | |
| ---------------------TGTGTTCACTTCTATTCCT-------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| -------------------------------------------TAGTCCTAGAGGGAAATCAG--------------------------------------- | 20 | - | - | - | 1 | - | |
| rat | aggagaacaaTGTGTCTATGTTGTGTTCACTTCTattcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAatgggaccgtaactggacaaagctgct | ||||||
| ****************************************************************************************************** | |||||||
| rat | ((.((.......((((((.(((((((((..((((..((((......(((.....)))........))))...))))..)))).)))))))))))...)).)) | 0.980 -21.64 | |||||
| rat | chromosome:1:50788452:50788553:-1 | intergenic |
sblock387 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.062 | no | no | 0.35/0.50 | 19/24/0.94 | 4.0 1.5 0.0 | 1.9 3.5 0.0 | 9 2 6 | 0 0 0 | 3 1 2 | 0 0 0 | 14 47 31 | 8 -21 1 | 5arm 5arm_loop_3arm 3arm | 39 46 46 | nd nd nd | 0.14 0.62 0.55 | 1 8 8 | 18 | 4 | -17 | -21 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------AAAUCAG------------------------------------------- | 7 | novel | |||
| seed | ---------------GUGUCUA---------------------------------------------------------------------------------------- | 3 | novel | |||
| seed | -----------------GUCUAUG-------------------------------------------------------------------------------------- | 3 | novel | |||
| seed | --------------------------GUGUUCA----------------------------------------------------------------------------- | 2 | miR-124* | |||
| seed | ------------------------------------------------AGUCCUA------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------CCUAGAG---------------------------------------------------- | 1 | novel | |||
| seed | -----------------------GUUGUGU-------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------GAAATCAGCAAGGGTAGAGA------------------------------- | 20 | 1 | - | 6 | - | |
| ----------------TGTCTATGTTGTGTTCACTTCT------------------------------------------------------------------------ | 22 | - | - | 3 | - | |
| --------------TGTGTCTATGTTGTGTTCACTTCT------------------------------------------------------------------------ | 24 | - | - | 3 | - | |
| ----------------------TGTTGTGTTCACTTCTATTC-------------------------------------------------------------------- | 20 | - | - | - | 1 | |
| -------------------------TGTGTTCACTTCTATTCCTA----------------------------------------------------------------- | 20 | - | - | 1 | - | |
| --------------------------------------------------TCCTAGAGGGAAATCAGCAAGGGT------------------------------------ | 24 | - | - | 1 | - | |
| -------------------------TGTGTTCACTTCTATTCCT------------------------------------------------------------------ | 19 | - | 1 | - | - | |
| -----------------------------------------------TAGTCCTAGAGGGAAATCAG------------------------------------------- | 20 | - | - | 1 | - | |
| rat | gatgaggagaacaaTGTGTCTATGTTGTGTTCACTTCTattcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAaggtgaccgtaactggacaaagctgctgatc | |||||
| ************************************************************************************************************** | ||||||
| rat | (((.((.((.......((((((.((((((.((((((((..((((......(((.....)))........))))...))))).))).))))))))))))...)).)).))) | 0.990 -30.44 | ||||
| rat | chromosome:1:50839187:50839296:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH (11 loci)
sblock11244 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.308 | no | no | 0.35/0.45 | 19/20/0.94 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 2 10 | 0 0 0 | 1 1 4 | 0 0 0 | 30 31 7 | -4 -6 18 | 5arm_loop 3arm_loop 3arm | 8 9 9 | nd nd nd | 0.63 0.50 0.45 | 5 5 6 | 16 | 4 | 0 | -17 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------------------------ACCAUUU------------------- | 13 | novel | |||
| seed | ----------------------------------------------UGAUGAA------------------------------------------- | 2 | novel | |||
| seed | -------------------------------ACAAGGU---------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| ---------------------------------------------------------------------TACCATTTCATTTCCTACTG------- | 20 | 1 | 1 | 1 | 10 | |
| ---------------------------------------------GTGATGAACACTCCCATACA------------------------------- | 20 | - | - | - | 2 | |
| ------------------------------TACAAGGTCAATGTTGTGA----------------------------------------------- | 19 | - | - | - | 1 | |
| rat | agaggttaatggtaataggatggtgtagtgtacaaggtcaatgttgtgatgaacactcccatacaagcgTACCATTTCATTTCCTACTGcatcctc | |||||
| ************************************************************************************************ | ||||||
| rat | .((((.....((.(((..(((((((...((((...((....((((......))))..))..))))....)))))))..))).))........)))) | 0.790 -20.72 | ||||
| rat | chromosome:7:19446518:19446613:1 | intergenic |
sblock1297 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.150 | no | no | 0.38/0.44 | 18/25/0.78 | 0.0 0.0 | 0.0 1.5 | 15 2 | 0 0 | 3 1 | 0 0 | 22 24 | 12 6 | 5arm 3arm | 5 5 | nd nd | 0.42 0.43 | 5 5 | 32 | 3 | -2 | -4 |
| reads | miRBase family seed | ||||
| seed | -----------------------UGGGGUU----------------------------------------------------------------------------------- | 29 | novel | ||
| seed | ---------------------------------------------------------------------AAACGUU------------------------------------- | 2 | novel | ||
| seed | ----------------------CUGGGGU------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------------------CTGGGGTTTACTGTGATTAAGAGA------------------------------------------------------------------- | 24 | 3 | 2 | 15 | |
| ----------------------CTGGGGTTTACTGTGATTAAGAG-------------------------------------------------------------------- | 23 | - | - | 4 | |
| ----------------------CTGGGGTTTACTGTGATT------------------------------------------------------------------------- | 18 | - | - | 4 | |
| ----------------------CTGGGGTTTACTGTGATTA------------------------------------------------------------------------ | 19 | - | 1 | - | |
| --------------------------------------------------------------------TAAACGTTGACAAAGAGGAGT------------------------ | 21 | - | - | 1 | |
| ---------------------TCTGGGGTTTACTGTGATTAAGAGA------------------------------------------------------------------- | 25 | - | - | 1 | |
| --------------------------------------------------------------------TAAACGTTGACAAAGAGG--------------------------- | 18 | - | - | 1 | |
| rat | gtttgtgactgtcagcctatatCTGGGGTTTACTGTGATTAAGAGAtaatgatgatggttgaccatcataaacgttgacaaagaggagttcaggggcaacagaagtgtaagca | ||||
| ***************************************************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | ||||
| rat | (((((((.((((..((((....(((((.((..((.((.((((.........(((((((....))))))).....)))))).))..)).))))))))).))))...))))))). | 0.510 -25.94 | |||
| rat | chromosome:1:47849861:47849973:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
sblock1298 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.150 | no | no | 0.38/0.44 | 18/25/0.78 | 0.0 0.0 | 0.0 1.5 | 15 2 | 0 0 | 3 1 | 0 0 | 22 24 | 12 6 | 5arm 3arm | 5 5 | nd nd | 0.42 0.43 | 5 5 | 32 | 3 | -2 | -4 |
| reads | miRBase family seed | ||||
| seed | -----------------------UGGGGUU----------------------------------------------------------------------------------- | 29 | novel | ||
| seed | ---------------------------------------------------------------------AAACGUU------------------------------------- | 2 | novel | ||
| seed | ----------------------CUGGGGU------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------------------CTGGGGTTTACTGTGATTAAGAGA------------------------------------------------------------------- | 24 | 3 | 2 | 15 | |
| ----------------------CTGGGGTTTACTGTGATTAAGAG-------------------------------------------------------------------- | 23 | - | - | 4 | |
| ----------------------CTGGGGTTTACTGTGATT------------------------------------------------------------------------- | 18 | - | - | 4 | |
| ----------------------CTGGGGTTTACTGTGATTA------------------------------------------------------------------------ | 19 | - | 1 | - | |
| --------------------------------------------------------------------TAAACGTTGACAAAGAGGAGT------------------------ | 21 | - | - | 1 | |
| ---------------------TCTGGGGTTTACTGTGATTAAGAGA------------------------------------------------------------------- | 25 | - | - | 1 | |
| --------------------------------------------------------------------TAAACGTTGACAAAGAGG--------------------------- | 18 | - | - | 1 | |
| rat | gtttgtgactgtcagcctatatCTGGGGTTTACTGTGATTAAGAGAtaatgatgatggttgaccatcataaacgttgacaaagaggagttcaggggcaacagaagtgtaagca | ||||
| ***************************************************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | ||||
| rat | (((((((.((((..((((....(((((.((..((.((.((((.........(((((((....))))))).....)))))).))..)).))))))))).))))...))))))). | 0.510 -25.94 | |||
| rat | chromosome:1:47850368:47850480:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
sblock3447 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.085 | no | no | 0.47/0.58 | 19/26/0.78 | 0.5 0.0 1.0 | 0.0 0.0 2.3 | 12 1 3 | 0 0 0 | 5 1 1 | 0 0 0 | 8 16 17 | 11 -1 2 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.35 0.35 0.32 | 4 4 4 | 23 | 5 | -9 | -10 |
| reads | miRBase family seed | ||||||
| seed | -----------ACAAAGC----------------------------------------------------------------------- | 13 | novel | ||||
| seed | ---------CUACAAA------------------------------------------------------------------------- | 5 | novel | ||||
| seed | --------------------------------------------------AAUACAG-------------------------------- | 2 | novel | ||||
| seed | -----------------CAUCGUG----------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------CAAAGCA---------------------------------------------------------------------- | 1 | miR-330* | ||||
| seed | -----------------------------------------------------ACAGGCU----------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T5S1 | |||
| ----------TACAAAGCATCGTGTCCGAG----------------------------------------------------------- | 20 | 2 | - | 1 | 1 | 9 | |
| --------TCTACAAAGCATCGTGTCCGAG----------------------------------------------------------- | 22 | - | 1 | - | - | 3 | |
| -------------------------------------------------TAATACAGGCTAACGGGCATACC----------------- | 23 | - | - | - | - | 1 | |
| ----------------------------------------------------TACAGGCTAACGGGCATAC------------------ | 19 | - | - | - | - | 1 | |
| -----------ACAAAGCATCGTGTCCGAG----------------------------------------------------------- | 19 | - | 1 | - | - | - | |
| -------------------------------------------------TAATACAGGCTAACGGGCA--------------------- | 19 | - | - | - | - | 1 | |
| --------TCTACAAAGCATCGTGTCC-------------------------------------------------------------- | 19 | 1 | - | - | - | - | |
| ----------------GCATCGTGTCCGAGCTTGACAAGTCC----------------------------------------------- | 26 | - | - | 1 | - | - | |
| rat | cgtgaggcTCTACAAAGCATCGTGTCCGAGcttgacaagtcccaagcgataatacaggctaacgggcataccgctgaataaaactttat | ||||||
| ***************************************************************************************** | |||||||
| rat | .((((((........(((...(((((((((((((....(((......)))....))))))..)))))))...)))........)))))) | 0.920 -22.89 | |||||
| rat | chromosome:12:5631484:5631572:1 | intergenic |
sblock6083 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.174 | no | no | 0.21/0.43 | 19/25/0.76 | 0.8 0.0 | 0.6 0.0 | 18 4 | 0 0 | 3 5 | 0 0 | 25 22 | 0 8 | 5arm_loop 3arm | 2 2 | nd nd | 0.47 0.41 | 9 4 | 33 | 6 | 17 | 15 |
| reads | miRBase family seed | |||||||
| seed | --------------------------ACUGUAU------------------------------------------------------------------------- | 14 | novel | |||||
| seed | -----------------------------GUAUCAU---------------------------------------------------------------------- | 7 | novel | |||||
| seed | ---------------------------------------------------------------GCAAAUU------------------------------------ | 7 | novel | |||||
| seed | ------------------------------------------------------------GAUGCAA--------------------------------------- | 4 | novel | |||||
| seed | ---------------------------CUGUAUC------------------------------------------------------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------TACTGTATCATTATCTTTAGAAAG--------------------------------------------------------- | 24 | 3 | - | - | - | 10 | - | |
| ----------------------------TGTATCATTATCTTTAGAA----------------------------------------------------------- | 19 | - | - | - | - | 5 | 1 | |
| --------------------------------------------------------------TGCAAATTTTCTTCATCGGGGA---------------------- | 22 | - | 1 | - | - | 4 | - | |
| -----------------------------------------------------------TGATGCAAATTTTCTTCATC--------------------------- | 20 | 1 | - | 1 | - | 1 | - | |
| --------------------------ACTGTATCATTATCTTTAGAAAG--------------------------------------------------------- | 23 | - | - | - | - | 1 | - | |
| --------------------------------------------------------------TGCAAATTTTCTTCATCGGGG----------------------- | 21 | - | - | - | - | 1 | - | |
| ----------------------------TGTATCATTATCTTTAGAAAGC-------------------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| -----------------------------------------------------------TGATGCAAATTTTCTTCATCGGGGA---------------------- | 25 | - | - | - | - | 1 | - | |
| -------------------------TACTGTATCATTATCTTTAG------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | |
| --------------------------------------------------------------TGCAAATTTTCTTCATCGG------------------------- | 19 | - | - | - | 1 | - | - | |
| rat | acttgtgtatggttccccaagagttTACTGTATCATTATCTTTAGAAAGcagaactttttgaTGCAAATTTTCTTCATCGGGGAtacaaagtcaattatataaagt | |||||||
| ********************************************************************************************************** | ||||||||
| rat | ((((.((((((((((((((((((.....(((((((.........(((((.....))))))))))))....)))))....)))))..........)))))))))))) | 0.920 -20.30 | ||||||
| rat | chromosome:2:105762717:105762822:-1 | intergenic ## {Repeats: trf 487 512 0 class=trf,trf 453 478 0 class=trf} |
sblock6890 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.627 | no | no | 0.40/0.65 | 18/26/0.77 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 5 18 1 | 0 0 0 0 | 1 3 3 1 | 0 0 0 0 | 4 26 13 0 | 32 10 23 40 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.45 0.45 0.45 0.53 | 4 5 9 6 | 44 | 5 | 0 | 11 |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------------------------------------GCAAGAU--------------------------- | 26 | novel | ||||
| seed | ---------------------------ACACGGC------------------------------------------------------------------------------------ | 6 | novel | ||||
| seed | ------------------------------------------------------------------------GGAAGGA--------------------------------------- | 6 | novel | ||||
| seed | -----------------------------------------------------------------------UGGAAGG---------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------------------------AUGCAAG----------------------------- | 1 | miR-300 | ||||
| seed | -------------------------------------------------------------------------------ACUAUGC-------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------------------------------------------------------GAGAAGC---------- | 1 | novel | ||||
| seed | -----------------------CCUUACA---------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----CACUUCA---------------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------------------TGCAAGATCCCTGGGGATGAGA------------- | 22 | - | - | - | 18 | - | |
| --------------------------TACACGGCACACTTTTCCTG------------------------------------------------------------------------ | 20 | - | - | - | 5 | - | |
| -----------------------------------------------------------------------------------TGCAAGATCCCTGGGGATGAG-------------- | 21 | - | - | - | 3 | - | |
| -----------------------------------------------------------------------TGGAAGGAACTATGCAAGA---------------------------- | 19 | - | - | - | 3 | - | |
| -----------------------------------------------------------------------TGGAAGGAACTATGCAAGATCCCTG---------------------- | 25 | - | - | - | 2 | - | |
| -----------------------------------------------------------------------------------TGCAAGATCCCTGGGGATGAGAA------------ | 23 | - | - | - | 2 | - | |
| -----------------------------------------------------------------------------------TGCAAGATCCCTGGGGATGAGAAG----------- | 24 | - | 1 | - | 1 | - | |
| ------------------------------------------------------------------------------AACTATGCAAGATCCCTGG--------------------- | 19 | - | - | - | 1 | - | |
| ----------------------------------------------------------------------TTGGAAGGAACTATGCAAGA---------------------------- | 20 | - | - | - | 1 | - | |
| ----GCACTTCACATCGGCACCCC---------------------------------------------------------------------------------------------- | 20 | 1 | - | - | - | - | |
| ---------------------------------------------------------------------------------TATGCAAGATCCCTGGGGATGAGAAG----------- | 26 | - | - | - | 1 | - | |
| --------------------------TACACGGCACACTTTTCC-------------------------------------------------------------------------- | 18 | - | - | 1 | - | - | |
| -----------------------------------------------------------------------TGGAAGGAACTATGCAAGATCC------------------------- | 22 | - | - | - | 1 | - | |
| -----------------------------------------------------------------------------------TGCAAGATCCCTGGGGATG---------------- | 19 | - | - | - | - | 1 | |
| ----------------------------------------------------------------------------------------------------TGAGAAGCGGGATTAAGG | 18 | 1 | - | - | - | - | |
| ----------------------CCCTTACACGGCACACTTTTCCT------------------------------------------------------------------------- | 23 | 1 | - | - | - | - | |
| rat | tccagcacttcacatcggcacccccttacacggcacacttttcctggaaaactggcccaggctgggtcctttggaaggaactaTGCAAGATCCCTGGGGATGAGAagcgggattaagg | ||||||
| ********************************************************************************************************************** | |||||||
| rat | (((....((((.((((....(((.........(((...((((((.(((...(((((....))))).)))...)))))).....))).........))))))).))))..)))...... | 0.410 -31.77 | |||||
| rat | chromosome:20:13213495:13213612:-1 | intergenic |
sblock7183 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.391 | no | no | 0.45/0.59 | 18/26/0.72 | 0.0 0.0 0.0 0.0 0.0 | 0.6 0.0 0.0 1.2 2.0 | 5 1 1 11 12 | 0 0 0 0 0 | 2 1 1 3 1 | 0 0 0 0 0 | 3 37 31 20 9 | 22 -4 0 8 17 | 5arm 3arm_loop 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.41 0.47 0.57 0.58 0.48 | 4 5 6 6 5 | 40 | 4 | -15 | -14 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------------GAGGACC------------------------------------ | 17 | novel | |||
| seed | ----------------------------------------------------------------------AGGAUGU--------------------------- | 15 | novel | |||
| seed | ----GACAGGU--------------------------------------------------------------------------------------------- | 5 | novel | |||
| seed | -----------------------------------------------------AGGACCC-------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------GGAUGUG-------------------------- | 1 | novel | |||
| seed | -------------------------------------------------ACGUAGG------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| ------------------------------------------------------------TGAGGACCATAGGATGTGAGA----------------------- | 21 | - | 1 | - | 6 | |
| ------------------------------------------------------------TGAGGACCATAGGATGTGAGAAGG-------------------- | 24 | 1 | 1 | - | 3 | |
| ---TGACAGGTGACAGGCAGCTCAC------------------------------------------------------------------------------- | 22 | - | - | 1 | 3 | |
| ---------------------------------------------------------------------TAGGATGTGAGAAGGCTCAAGACACC--------- | 26 | - | - | - | 4 | |
| ---------------------------------------------------------------------TAGGATGTGAGAAGGCTCAAGAC------------ | 23 | - | - | - | 2 | |
| ---------------------------------------------------------------------TAGGATGTGAGAAGGCTCAAGACAC---------- | 25 | - | - | - | 2 | |
| ------------------------------------------------------------TGAGGACCATAGGATGTGAGAAG--------------------- | 23 | - | - | - | 2 | |
| ---------------------------------------------------------------------TAGGATGTGAGAAGGCTCAA--------------- | 20 | - | - | - | 2 | |
| ---------------------------------------------------------------------TAGGATGTGAGAAGGCTCAAGACA----------- | 24 | - | - | - | 2 | |
| ------------------------------------------------------------TGAGGACCATAGGATGTGAG------------------------ | 20 | 1 | - | - | - | |
| ----------------------------------------------------TAGGACCCTGAGGACCATAGG------------------------------- | 21 | - | - | - | 1 | |
| ------------------------------------------------TACGTAGGACCCTGAGGAC------------------------------------- | 19 | 1 | - | - | - | |
| ------------------------------------------------------------TGAGGACCATAGGATGTGA------------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------------------------------------TAGGATGTGAGAAGGCTCAAGA------------- | 22 | - | - | - | 1 | |
| ---TGACAGGTGACAGGCAGCT---------------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------------------------------------TAGGATGTGAGAAGGCTCA---------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------------------AGGATGTGAGAAGGCTCAAGACAC---------- | 24 | - | - | - | 1 | |
| ------------------------------------------------------------TGAGGACCATAGGATGTGAGAA---------------------- | 22 | - | - | - | 1 | |
| ---------------------------------------------------------------------TAGGATGTGAGAAGGCTC----------------- | 18 | - | - | - | 1 | |
| rat | tcaTGACAGGTGACAGGCAGCTCACgggggaaggagggggaagcctggtacgtaggacccTGAGGACCATAGGATGTGAGAAGGCTCAAGACACCcagaagtgg | |||||
| ******************************************************************************************************** | ||||||
| rat | .(((....((((...(((..((((((.((......((((....((((.....)))).)))).....))......))))))...))).....)))).....))). | 0.960 -28.80 | ||||
| rat | chromosome:20:5551855:5551958:1 | intergenic |
sblock8237 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.373 | no | no | 0.16/0.40 | 18/25/0.75 | 0.5 1.0 0.5 1.0 0.0 | 1.0 1.5 2.5 1.0 0.0 | 2 2 2 2 17 | 0 0 0 0 0 | 2 2 1 2 2 | 0 0 0 0 0 | 0 6 14 21 7 | 14 8 -4 -22 8 | 5arm 5arm 5arm 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.42 0.47 0.32 0.42 0.38 | 4 6 6 5 6 | 28 | 5 | 4 | 0 |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------------AGUAUUU-------------------- | 19 | novel | ||||
| seed | -----------------------------------GUCCAAG---------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------UAGUAUU--------------------- | 1 | novel | ||||
| seed | ---------------UACUUCC------------------------------------------------------ | 1 | novel | ||||
| seed | -UGGCUUC-------------------------------------------------------------------- | 1 | novel | ||||
| seed | -------CUCAGUU-------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------ACUUCCA----------------------------------------------------- | 1 | novel | ||||
| seed | ---------CAGUUUU------------------------------------------------------------ | 1 | novel | ||||
| seed | -------------------------------------CCAAGGG-------------------------------- | 1 | novel | ||||
| seed | --GGCUUCU------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T3S2 | T4S2 | T5S1 | |||
| ------------------------------------------------TAGTATTTTATAATGTTCAGA------- | 21 | - | - | 1 | - | 17 | |
| --------------TTACTTCCATAAATGCTCCTTGTCC------------------------------------- | 25 | - | - | - | - | 1 | |
| ---------------TACTTCCATAAATGCTCCT------------------------------------------ | 19 | - | - | - | - | 1 | |
| -TGGCTTCTCAGTTTTACTTC------------------------------------------------------- | 20 | - | 1 | - | - | - | |
| ------------------------------------------------TAGTATTTTATAATGTTCA--------- | 19 | - | - | - | - | 1 | |
| ------TCTCAGTTTTACTTCCAT---------------------------------------------------- | 18 | - | - | - | 1 | - | |
| ------------------------------------TCCAAGGGTCTTTAGTATT--------------------- | 19 | - | - | - | 1 | - | |
| ----------------------------------TGTCCAAGGGTCTTTAGTATTTT------------------- | 23 | - | - | - | - | 1 | |
| --------TCAGTTTTACTTCCATAAA------------------------------------------------- | 19 | 1 | - | - | - | - | |
| ATGGCTTCTCAGTTTTACT--------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -----------------------------------------------TTAGTATTTTATAATGTTCAGA------- | 22 | - | - | - | - | 1 | |
| rat | atggcttctcagttttacttccataaatgctccttgtccaagggtcttTAGTATTTTATAATGTTCAGAtaaagcc | ||||||
| **************************************************************************** | |||||||
| rat | ..(((((....((((.((......(((((((((((.....)))).....)))))))......))..)))).))))) | 0.880 -11.10 | |||||
| rat | chromosome:3:141758372:141758447:1 | intergenic |
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