other hairpins
novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH (11 loci)
sblock8519 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.039 | no | no | 0.47/0.62 | 19/25/0.72 | 0.6 0.0 0.8 | 1.4 0.0 0.0 | 14 1 12 | 0 0 0 | 1 1 3 | 0 0 0 | 8 22 5 | 1 -9 21 | 5arm 5arm_loop_3arm 3arm | 2 2 2 | nd nd nd | 0.36 0.44 0.59 | 4 7 8 | 36 | 3 | 24 | 19 |
| reads | miRBase family seed | ||||
| seed | -------------GUGAAGC------------------------------------------------------------------------- | 12 | novel | ||
| seed | -------------------------------------------------------------------CUGCGUC------------------- | 9 | novel | ||
| seed | ---------------------------------------------------------------------GCGUCUC----------------- | 6 | novel | ||
| seed | ---------CAAUGUG----------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------UCCUCUG----------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------------UGCGUCU------------------ | 1 | novel | ||
| seed | --------------UGAAGCC------------------------------------------------------------------------ | 1 | novel | ||
| seed | ------------UGUGAAG-------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------GAAGCCA----------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------CCUGGGA----------- | 1 | novel | ||
| seed | -----------------------CUGAGAG--------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ------------------------------------------------------------------TCTGCGTCTCCTGGGATAGACA----- | 22 | 1 | - | 7 | |
| --------------------------------------------------------------------TGCGTCTCCTGGGATAGACA----- | 20 | - | - | 5 | |
| ------------TGTGAAGCCATCTGAGAGC-------------------------------------------------------------- | 19 | - | - | 5 | |
| ------------TGTGAAGCCATCTGAGAGCC------------------------------------------------------------- | 20 | - | - | 5 | |
| ------------TGTGAAGCCATCTGAGAGCCGCACT-------------------------------------------------------- | 25 | - | - | 2 | |
| --------GCAATGTGAAGCCATCTGAGAGCC------------------------------------------------------------- | 24 | - | - | 2 | |
| --------------------------------------------------------------------TGCGTCTCCTGGGATAGACATG--- | 22 | - | - | 1 | |
| -------------------------------------------------------------------CTGCGTCTCCTGGGATAGACA----- | 21 | - | - | 1 | |
| -----------ATGTGAAGCCATCTGAGAGCC------------------------------------------------------------- | 21 | - | - | 1 | |
| --------------TGAAGCCATCTGAGAGCCGCAC--------------------------------------------------------- | 22 | - | - | 1 | |
| --------------------------------------------------------------------------TCCTGGGATAGACATGCTT | 19 | - | 1 | - | |
| ----------------------TCTGAGAGCCGCACTGGGAGAAGCA---------------------------------------------- | 25 | - | - | 1 | |
| --------------------------------------------------------------TTCCTCTGCGTCTCCTGGGA----------- | 20 | - | - | 1 | |
| -------------GTGAAGCCATCTGAGAGCCGC----------------------------------------------------------- | 21 | - | - | 1 | |
| ------------------------------------------------------------------TCTGCGTCTCCTGGGATAG-------- | 19 | - | - | 1 | |
| rat | ctcaggcagcaaTGTGAAGCCATCTGAGAGCCgcactgggagaagcagtgtggagcagacacttccTCTGCGTCTCCTGGGATAGACAtgctt | ||||
| ********************************************************************************************* | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000057494 ENSRNOG00000037844 | ||||
| rat | ((((((..(((....((((...((((....((((((((.......))))))))..))))..))))...)))....))))))............ | 0.530 -31.80 | |||
| rat | chromosome:4:120128360:120128452:-1 | Same_strand|Intronic_coding|ENSRNOT00000057494|ENSRNOG00000037844 ## ENSRNOG00000037844|protein_coding|| |
sblock8968 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.262 | no | no | 0.47/0.62 | 19/25/0.78 | 0.0 0.6 0.0 0.8 | 0.0 1.4 0.0 0.0 | 7 14 1 12 | 0 0 0 0 | 2 1 1 3 | 0 0 0 0 | 11 22 36 5 | 21 1 -9 21 | 5arm 5arm 5arm_loop_3arm 3arm | 2 2 2 2 | nd nd nd nd | 0.40 0.36 0.44 0.50 | 4 4 7 4 | 45 | 4 | 4 | 4 |
| reads | miRBase family seed | |||||
| seed | ---------------------------GUGAAGC------------------------------------------------------------------------- | 12 | novel | |||
| seed | ---------------------------------------------------------------------------------CUGCGUC------------------- | 9 | novel | |||
| seed | ------------CACUCAG---------------------------------------------------------------------------------------- | 8 | novel | |||
| seed | -----------------------------------------------------------------------------------GCGUCUC----------------- | 6 | novel | |||
| seed | -----------------------CAAUGUG----------------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------UCACUCA----------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------UGUGAAG-------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------------------------CCUGGGA----------- | 1 | novel | |||
| seed | -------------------------------------CUGAGAG--------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------------------------UGCGUCU------------------ | 1 | novel | |||
| seed | ----------------------------UGAAGCC------------------------------------------------------------------------ | 1 | novel | |||
| seed | -----------------------------GAAGCCA----------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T3S2 | T5S1 | |||
| -----------TCACTCAGGCAGCAATGTGA---------------------------------------------------------------------------- | 20 | - | - | 1 | 7 | |
| --------------------------------------------------------------------------------TCTGCGTCTCCTGGGATAGACA----- | 22 | 1 | - | - | 7 | |
| --------------------------TGTGAAGCCATCTGAGAGCC------------------------------------------------------------- | 20 | - | - | - | 5 | |
| --------------------------TGTGAAGCCATCTGAGAGC-------------------------------------------------------------- | 19 | - | - | - | 5 | |
| ----------------------------------------------------------------------------------TGCGTCTCCTGGGATAGACA----- | 20 | - | - | - | 5 | |
| ----------------------GCAATGTGAAGCCATCTGAGAGCC------------------------------------------------------------- | 24 | - | - | - | 2 | |
| ----------TTCACTCAGGCAGCAATGTGA---------------------------------------------------------------------------- | 21 | - | - | - | 2 | |
| --------------------------TGTGAAGCCATCTGAGAGCCGCACT-------------------------------------------------------- | 25 | - | - | - | 2 | |
| ---------------------------GTGAAGCCATCTGAGAGCCGC----------------------------------------------------------- | 21 | - | - | - | 1 | |
| ---------------------------------------------------------------------------------CTGCGTCTCCTGGGATAGACA----- | 21 | - | - | - | 1 | |
| ----------------------------------------------------------------------------------TGCGTCTCCTGGGATAGACATG--- | 22 | - | - | - | 1 | |
| ------------------------------------TCTGAGAGCCGCACTGGGAGAAGCA---------------------------------------------- | 25 | - | - | - | 1 | |
| -------------------------ATGTGAAGCCATCTGAGAGCC------------------------------------------------------------- | 21 | - | - | - | 1 | |
| ----------------------------TGAAGCCATCTGAGAGCCGCAC--------------------------------------------------------- | 22 | - | - | - | 1 | |
| --------------------------------------------------------------------------------TCTGCGTCTCCTGGGATAG-------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------------------------------------TCCTGGGATAGACATGCTT | 19 | - | 1 | - | - | |
| rat | aggcccaccctTCACTCAGGCAGCAATGTGAAGCCATCTGAGAGCCgcactgggagaagcagtgtggagcagacacttctTCTGCGTCTCCTGGGATAGACAtgctt | |||||
| *********************************************************************************************************** | ||||||
| rat | ((((.....((...((((((..(((....((((...((((....((((((((.......))))))))..))))..))))...)))....))))))..))....)))) | 0.440 -33.90 | ||||
| rat | chromosome:4:117814688:117814794:1 | intergenic |
sblock7309 [novel_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.884 | no | no | 0.35/0.47 | 19/23/0.96 | 0.9 0.0 | 0.9 0.0 | 21 1 | 0 0 | 1 1 | 0 0 | 15 22 | 22 14 | 5arm 3arm | 4 4 | nd nd | 0.45 0.47 | 4 4 | 28 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------------------AUCCAAU--------------- | 4 | novel | |
| seed | --------------------------------------------------------AUCCAAU------------------------------------------------------- | 4 | novel | |
| seed | ----------------AUCCAAU----------------------------------------------------------------------------------------------- | 4 | novel | |
| seed | ----------------------------------------------------------CCAAUGA----------------------------------------------------- | 4 | novel | |
| seed | --------------------------------------------------------------------------------------------------CCAAUGA------------- | 4 | novel | |
| seed | ------------------CCAAUGA--------------------------------------------------------------------------------------------- | 4 | novel | |
| seed | ------------------------------------------------------------------------------CCUGGAA--------------------------------- | 1 | novel | |
| seed | --------------AUAUCCA------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------------------------AUAUCCA----------------- | 1 | novel | |
| seed | ------------------------------------------------------AUAUCCA--------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------------TCCAATGAGTTGAGAGCAAG----------------------------------------- | 20 | - | 4 | |
| -----------------TCCAATGAGTTGAGAGCAAG--------------------------------------------------------------------------------- | 20 | - | 4 | |
| -------------------------------------------------------------------------------------------------TCCAATGAGTTGAGAGCAAG- | 20 | - | 4 | |
| ---------------TATCCAATGAGTTGAGAGCA----------------------------------------------------------------------------------- | 20 | - | 3 | |
| -----------------------------------------------------------------------------------------------TATCCAATGAGTTGAGAGCA--- | 20 | - | 3 | |
| -------------------------------------------------------TATCCAATGAGTTGAGAGCA------------------------------------------- | 20 | - | 3 | |
| -----------------------------------------------------------------------------CCCTGGAAGTTCTGCATAT---------------------- | 19 | 1 | - | |
| -----------------------------------------------------TATATCCAATGAGTTGAGAGCAA------------------------------------------ | 23 | - | 1 | |
| ---------------------------------------------------------------------------------------------TATATCCAATGAGTTGAGAGCAA-- | 23 | - | 1 | |
| -------------------------------------------------------TATCCAATGAGTTGAGAGCAA------------------------------------------ | 21 | - | 1 | |
| -------------TATATCCAATGAGTTGAGAGCAA---------------------------------------------------------------------------------- | 23 | - | 1 | |
| -----------------------------------------------------------------------------------------------TATCCAATGAGTTGAGAGCAA-- | 21 | - | 1 | |
| ---------------TATCCAATGAGTTGAGAGCAA---------------------------------------------------------------------------------- | 21 | - | 1 | |
| rat | tttgatgctcaaataTATCCAATGAGTTGAGAGCAAGccccggaagttctgcataTATCCAATGAGTTGAGAGCAAGccctggaagttctgcataTATCCAATGAGTTGAGAGCAAGc | |||
| ********************************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000035355 ENSRNOG00000023712 Stox1_predicted | |||
| rat | ((((...(((((.....((....((..(((((((...((..((..(((((.((....((....))..)))))))...))..))..))))).))....))....)).)))))..)))). | 0.610 -22.00 | ||
| rat | chromosome:20:29927950:29928067:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000035355|ENSRNOG00000023712 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000057578|ENSRNOG00000023712 ## ENSRNOG00000023712|protein_coding|Stox1_predicted| ## {Repeats: trf 80 99 0 class=trf,trf 40 59 0 class=trf,trf 59 83 0 class=trf} |
novel_lenNOK_5varHIGH_mirtron (11 loci)
block4721 [novel_lenNOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.173 | no | no | 0.58/0.61 | 19/23/0.67 | 1.3 | 1.0 | 3 | 0 | 2 | 0 | 15 | 14 | 3arm | 1 | 2 | 0.20 | 2 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------UCCUGAC----------------------------- | 1 | miR-378* | |
| seed | ----------------------------------------------------------------------------CUGACCA--------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------GUCCUGA------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T2S2 | |||
| ------------------------------------------------------------------------CGTCCTGACCAGGCTTACCTTGC--------------- | 23 | - | 1 | |
| ---------------------------------------------------------------------------CCTGACCAGGCTTACCTTGC--------------- | 20 | 1 | - | |
| -------------------------------------------------------------------------GTCCTGACCAGGCTTACCT------------------ | 19 | 1 | - | |
| rat | gcgtttctcagtactggtgaggagccgggcgggctagcagggcggatcgcttgggacacccagtggaccccgCGTCCTGACCAGGCTTACCTTGCagatgcagatgcgct | |||
| ************************************************************************************************************** | ||||
| >>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>> | ENSRNOT00000004314 ENSRNOG00000003224 LOC497867 | |||
| rat | ((((.(((..(((((.((((((((((.((((((...((.(((....((((.((((...)))))))).))).))..)))).)).))))..)))))))).)))))).)))). | 1.000 -46.10 | ||
| rat | chromosome:10:10754809:10754918:-1 | Same_strand|Intronic_coding|ENSRNOT00000004314|ENSRNOG00000003224 ## ENSRNOG00000003224|protein_coding|LOC497867|LOC497867 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q3B8R8] |
block53122 [novel_lenNOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.080 | no | no | 0.53/0.67 | 19/23/0.43 | 2.5 0.0 | 0.5 0.8 | 2 5 | 0 0 | 2 3 | 0 0 | 16 25 | 7 1 | 5arm 5arm | 1 1 | 3 1 | 0.26 0.24 | 2 2 | 7 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --------------------------UAAGCCA--------------------------------------------------------------- | 5 | novel | ||||
| seed | ----------------------CAGGUAA------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------UCCGUCA------------------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------GTAAGCCACTGCCATGCCC---------------------------------------------------- | 19 | 2 | - | - | - | 1 | |
| -------------------------GTAAGCCACTGCCATGCCCGC-------------------------------------------------- | 21 | - | - | - | 2 | - | |
| ----------------CTCCGTCAGGTAAGCCACTGCCA--------------------------------------------------------- | 23 | - | 1 | - | - | - | |
| ---------------------TCAGGTAAGCCACTGCCAT-------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| rat | gcagcagcgggagcgcCTCCGTCAGGTAAGCCACTGCCATGCCCGCgctcgcgccggcacgcgcagtcgctcacctactgctcgtccgtaggtgtc | ||||||
| ************************************************************************************************ | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000054970 ENSRNOG00000036697 Mafg | ||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>> | ENSRNOT00000054951 ENSRNOG00000036683 NP_001100543.1 | ||||||
| rat | (((...(((((((((.....((.((((.(((.(((((..((((.(((....))).))))...))))).))).)))))))))))..))))...))). | 0.580 -38.80 | |||||
| rat | chromosome:10:110016160:110016255:-1 | Same_strand|Boundary_coding|ENSRNOT00000054951|ENSRNOG00000036683 ## Same_strand|Intronic_non-coding|ENSRNOT00000054970|ENSRNOG00000036697 ## Same_strand|Boundary_non-coding|ENSRNOT00000051462|ENSRNOG00000036697 ## ENSRNOG00000036697|protein_coding|Mafg|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G [Source:RefSeq_peptide;Acc:NP_071781] ## ENSRNOG00000036683|protein_coding|NP_001100543.1|sirtuin 7 [Source:RefSeq_peptide;Acc:NP_001100543] |
block599766 [novel_lenNOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.581 | no | no | 0.59/0.67 | 18/22/0.40 | 1.2 | 1.8 | 5 | 0 | 3 | 0 | 6 | 22 | 5arm | 2 | 4 | 0.27 | 3 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------ACCCUAG----------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -------UACCCUA------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -----------CUAGCCU-------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T4S1 | |||
| -------TACCCTAGCCTCTGCCCCTCT---------------------------------------------------------------------- | 21 | 1 | - | - | |
| ------TTACCCTAGCCTCTGCCCC------------------------------------------------------------------------- | 19 | 1 | - | - | |
| ------TTACCCTAGCCTCTGCCCCTCT---------------------------------------------------------------------- | 22 | 1 | - | - | |
| -------TACCCTAGCCTCTGCCCC------------------------------------------------------------------------- | 18 | - | 1 | - | |
| ----------CCTAGCCTCTGCCCCTCT---------------------------------------------------------------------- | 18 | - | - | 1 | |
| rat | actcagTTACCCTAGCCTCTGCCCCTCTatagcttctcaacaaggaccctgctgagcgcctggggtgtcgtggaggtggtgcccgtgaggtaaaggag | ||||
| ************************************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000020214 ENSRNOG00000014615 Gprk6 | ||||
| +++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000047958 ENSRNOG00000014615 Gprk6 | ||||
| rat | .(((..(((((...((...((((((((((..((..(((....(((...((....))..))).))).))..)))))).))))...))..)))))..))) | 0.500 -31.30 | |||
| rat | chromosome:17:15227434:15227531:-1 | Same_strand|Intronic_coding|ENSRNOT00000020214|ENSRNOG00000014615 ## ENSRNOG00000014615|protein_coding|Gprk6|G protein-coupled receptor kinase 6 (EC 2.7.11.16) (G protein-coupled receptor kinase GRK6). [Source:UniProtKB/Swiss-Prot;Acc:P97711] |
block852155 [novel_lenNOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.142 | no | no | 0.65/0.70 | 19/23/0.62 | 1.4 | 1.0 | 8 | 0 | 5 | 0 | 8 | 1 | 3arm | 1 | 0 | 0.21 | 2 | 8 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------UGCUCCC-------------------- | 5 | novel | ||||
| seed | -------------------------------------------AUGCUGC------------------------ | 2 | novel | ||||
| seed | --------------------------------------------UGCUGCU----------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T4S2 | T5S1 | |||
| ----------------------------------------------CTGCTCCCCTACCCCCACAG-------- | 20 | 2 | 1 | - | - | - | |
| ----------------------------------------------CTGCTCCCCTACCCCCACA--------- | 19 | - | - | 1 | 1 | - | |
| -------------------------------------------ATGCTGCTCCCCTACCCCCACAG-------- | 23 | - | 1 | - | - | - | |
| ------------------------------------------CATGCTGCTCCCCTACCCCCACA--------- | 23 | - | 1 | - | - | - | |
| ------------------------------------------CATGCTGCTCCCCTACCCC------------- | 19 | - | - | - | - | 1 | |
| rat | gcacagagggtgagggcaggaggcatagctgtgccaactaagCATGCTGCTCCCCTACCCCCACAGcacaggcg | ||||||
| ************************************************************************** | |||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>> | ENSRNOT00000018017 ENSRNOG00000013156 NP_001100941.1 | ||||||
| rat | ((.......(((.(((.(((.((..((((.((((.......))))))))..))))).))).))).......)). | 0.820 -26.54 | |||||
| rat | chromosome:1:63876820:63876893:-1 | Same_strand|Intronic_coding|ENSRNOT00000018017|ENSRNOG00000013156 ## ENSRNOG00000013156|protein_coding|NP_001100941.1|CCR4-NOT transcription complex, subunit 3 [Source:RefSeq_peptide;Acc:NP_001100941] |
block1311335 [novel_lenNOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.021 | no | no | 0.58/0.60 | 19/20/0.50 | 1.5 | 1.0 | 2 | 0 | 2 | 0 | 7 | 21 | 3arm | 1 | 0 | 0.26 | 2 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------UGCCCAU--------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------CCAUUGC------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S1 | |||
| --------------------------------------------------------------------CCCATTGCTGCTCTTCCAG------- | 19 | 1 | - | |
| -----------------------------------------------------------------CTGCCCATTGCTGCTCTTCC--------- | 20 | - | 1 | |
| rat | gttagagtctggagagtggctgggaggaaagagactgtagaaacctcaggaaaacttgcctccgtCTGCCCATTGCTGCTCTTCCAGgtctgca | |||
| ********************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>> | ENSRNOT00000028052 ENSRNOG00000020663 NP_001099917.1 | |||
| rat | ((.(((.(((((((((..((((((.(((..(((.(((.((....)))))..........)))..))).))))..))..)))).)))))))))). | 0.760 -34.40 | ||
| rat | chromosome:2:181629159:181629252:1 | Same_strand|Intronic_coding|ENSRNOT00000028052|ENSRNOG00000020663 ## ENSRNOG00000020663|protein_coding|NP_001099917.1|similar to Pygopus homolog 2 (predicted) (RGD1308535_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001106447] |
block1430653 [novel_lenNOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.529 | no | no | 0.61/0.63 | 19/23/0.50 | 2.0 | 0.0 | 2 | 0 | 2 | 0 | 5 | 17 | 3arm | 1 | 3 | 0.21 | 2 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------AUCUUGC---------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------GAGCAUC-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------------------------------------------------CATCTTGCCCTCTCCACCC----- | 19 | 1 | - | |
| ---------------------------------------------------------------------TGAGCATCTTGCCCTCTCCACCC----- | 23 | - | 1 | |
| rat | cctggccccgtgggaggtgtatgttatgtgggtgaagtgcagactcgggggtggtctggggactgagccTGAGCATCTTGCCCTCTCCACCCcaggc | |||
| ************************************************************************************************* | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000008981 ENSRNOG00000006479 Lama5 | |||
| rat | (((((....((((((((.(((....((((((((..(((.((((((.......))))))...)))..))))..))))..))))))).)))).))))). | 0.620 -37.10 | ||
| rat | chromosome:3:169253319:169253415:-1 | Same_strand|Intronic_coding|ENSRNOT00000008981|ENSRNOG00000006479 ## Same_strand|Boundary_non-coding|ENSRNOT00000051597|ENSRNOG00000006479 ## ENSRNOG00000006479|protein_coding|Lama5|Laminin chain (Fragment). [Source:UniProtKB/TrEMBL;Acc:P70636] |
block1870431 [novel_lenNOK_5varHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.102 | no | no | 0.68/0.70 | 19/20/0.50 | 2.0 | 1.5 | 2 | 0 | 2 | 0 | 7 | 25 | 3arm | 1 | 1 | 0.25 | 2 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------------CUGGUGA---------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------------UGAGCGU------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| --------------------------------------------------------------------------------------GTGAGCGTGGGTAGCCGCT------- | 19 | - | 1 | |
| ----------------------------------------------------------------------------------GCTGGTGAGCGTGGGTAGCC---------- | 20 | 1 | - | |
| rat | acagggggcggggctcgggccaaaccggcgcaggcgcattggcttcgcgtgactgaagaggccggcgctggtatagagtgctGCTGGTGAGCGTGGGTAGCCGCTggacttg | |||
| **************************************************************************************************************** | ||||
| .............................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++ | ENSRNOT00000057471 ENSRNOG00000007327 Pars2 | |||
| rat | .((((.(((((.(((((.((...((((((((((((((...((((((...........)))))).))))).........))).))))))..)).)))))..)))))...)))) | 0.670 -50.40 | ||
| rat | chromosome:5:127727853:127727964:1 | Same_strand|Boundary_non-coding|ENSRNOT00000009630|ENSRNOG00000007327 ## ENSRNOG00000007327|protein_coding|Pars2|Probable prolyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.15) (Proline--tRNA ligase) (ProRS). [Source:UniProtKB/Swiss-Prot;Acc:Q5M7W7] |
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