other hairpins
novel_lenNOK_5varHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH (11 loci)
block2416660 [novel_lenNOK_5varHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.33/0.50 | 18/21/0.40 | 0.0 0.0 1.7 | 0.0 0.0 0.3 | 1 1 3 | 0 0 0 | 1 1 2 | 0 0 0 | 2 8 11 | 26 20 13 | 5arm 5arm 5arm | 2 2 2 | nd nd nd | 0.39 0.50 0.48 | 5 7 7 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------AGUUAUC----------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------CAGUUAU------------------------------------------------------------------------------------ | 1 | miR-101a* | ||
| seed | ---------UGGCAGU--------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---AAUUUCU--------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------UAUCCUU-------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T5S1 | |||
| --GAATTTCTGGCAGTTATC----------------------------------------------------------------------------------- | 18 | - | - | 1 | |
| ------------CAGTTATCCTTGACAGTTAG----------------------------------------------------------------------- | 20 | - | 1 | - | |
| --------CTGGCAGTTATCCTTGAC----------------------------------------------------------------------------- | 18 | 1 | - | - | |
| -----------GCAGTTATCCTTGACAGTTAG----------------------------------------------------------------------- | 21 | 1 | - | - | |
| ---------------TTATCCTTGACAGTTAGT---------------------------------------------------------------------- | 18 | 1 | - | - | |
| rat | taGAATTTCTGGCAGTTATCCTTGACAGTTAGTtataccaggttgtaattacgacccggaaaatgtaggtaactttttaacactgcagccagaggtcccctag | ||||
| ******************************************************************************************************* | |||||
| ----------------------------------------------------------------------------------------------------------------- | ENSRNOT00000012404 ENSRNOG00000009303 Zwilch | ||||
| rat | (((.(((((((((.((.......((.(((((.(((((((.((((((....)))))).))....))))).))))).)).......)).)))))))))...))). | 0.610 -29.54 | |||
| rat | chromosome:8:68341228:68341330:1 | Opposite_strand|Intronic_coding|ENSRNOT00000012404|ENSRNOG00000009303 ## ENSRNOG00000009303|protein_coding|Zwilch|Zwilch, kinetochore associated, homolog (Drosophila) Gene [Source:MGI (curated);Acc:Zwilch-001] |
block2845182 [novel_lenNOK_5varHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.50/0.50 | 18/20/0.50 | 2.0 | 1.0 | 2 | 0 | 1 | 0 | 16 | 5 | 5arm | 10 | nd | 0.40 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------UACUCUG------------------------------------------------------------------ | 1 | novel |
| seed | ---------------------CUGUGGA-------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| --------------------TCTGTGGATATCCCCTTG---------------------------------------------------- | 18 | 1 | |
| ----------------GTACTCTGTGGATATCCCCT------------------------------------------------------ | 20 | 1 | |
| rat | acctcatgcccaaaaaGTACTCTGTGGATATCCCCTTGgacaaaactgttgtcaacaaggatgtattcagagacccagcgaggcagaagg | ||
| ****************************************************************************************** | |||
| rat | .(((..((((......((.(((((...((((((.....(((((.....))))).....))))))...))))))).......))))..))) | 1.000 -29.02 |
| rat | chromosome:X:143095249:143095338:-1 | intergenic |
block997585 [novel_lenNOK_5varHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.42/0.45 | 19/23/0.45 | 1.2 | 1.0 | 10 | 0 | 1 | 0 | 22 | 2 | 5arm | 1 | nd | 0.41 | 4 | 11 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------CUGCAAA------------------------------------------------------------------ | 6 | novel |
| seed | -----------------------------GCAAACA---------------------------------------------------------------- | 2 | novel |
| seed | -----------------------UCCUCUG---------------------------------------------------------------------- | 2 | novel |
| seed | ------------------------CCUCUGC--------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------TCTGCAAACATTGACTGTG------------------------------------------------------- | 19 | 6 | |
| ----------------------TTCCTCTGCAAACATTGACTGTG------------------------------------------------------- | 23 | 2 | |
| ----------------------------TGCAAACATTGACTGTGCCTTC-------------------------------------------------- | 22 | 2 | |
| -----------------------TCCTCTGCAAACATTGACTGTG------------------------------------------------------- | 22 | 1 | |
| rat | aagacctttcccagcctgagtgTTCCTCTGCAAACATTGACTGTGCCTTCtcagagagaggaaactggtgttaagagaacactacagactgagctgtctt | ||
| **************************************************************************************************** | |||
| rat | (((((......(((.(((((((((.((((...((((((....((..((((((...))))))..)).)))))).)))))))))).))).)))....))))) | 0.980 -31.00 |
| rat | chromosome:1:128262255:128262354:1 | intergenic |
block1470178 [novel_lenNOK_5varHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.42/0.47 | 19/23/0.25 | 0.0 2.4 | 0.0 3.4 | 3 5 | 0 0 | 1 3 | 0 0 | 5 10 | 38 22 | 5arm 5arm | 1 1 | nd nd | 0.63 0.40 | 11 4 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------AGGCUUC------------------------------------------------------------------------------------------------------ | 3 | novel | ||
| seed | --------------CUAGCUU---------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ----------------AGCUUUC-------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------UCCCUAG------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------UCUACCU--------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S1 | |||
| -----TAGGCTTCCCTAGCTTTCT------------------------------------------------------------------------------------------- | 19 | - | - | 3 | |
| -------------CCTAGCTTTCTACCTTTAG----------------------------------------------------------------------------------- | 19 | - | - | 2 | |
| ---------------TAGCTTTCTACCTTTAGCCCTCA----------------------------------------------------------------------------- | 23 | - | - | 1 | |
| --------------------TTCTACCTTTAGCCCTCATG--------------------------------------------------------------------------- | 20 | 1 | - | - | |
| ----------TTCCCTAGCTTTCTACCTT-------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| rat | tctctTAGGCTTCCCTAGCTTTCTACCTTTAGCCCTCATGgcgttgttttctctgactccttgagtagaaggagttaaataaagcaggggagggctcattgtagggccaagagaa | ||||
| ******************************************************************************************************************* | |||||
| rat | ((((((.((((...........((((....(((((((...((.(((((.....(((((((((......)))))))))))))).))....)))))))....)))))))))))))). | 0.410 -42.60 | |||
| rat | chromosome:3:76969852:76969966:1 | intergenic |
block1766488 [novel_lenNOK_5varHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.32/0.38 | 19/24/0.50 | 3.0 | 0.5 | 2 | 0 | 2 | 0 | 13 | 17 | 3arm | 1 | nd | 0.42 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------GACACUU------------------------------ | 1 | novel | |
| seed | ------------------------------------------------------------------------------------UGUGAGU------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| -----------------------------------------------------------------------------------TTGTGAGTTCATAGAAGAT------------- | 19 | 1 | - | |
| -----------------------------------------------------------------------------TGACACTTGTGAGTTCATAGAAGA-------------- | 24 | - | 1 | |
| rat | gggatagatgtcacatggtgaacaaagtactttcccacttagctaagactcaaagagagagagttaaagcaaggggaTGACACTTGTGAGTTCATAGAAGATattgtttggtcct | |||
| ******************************************************************************************************************* | ||||
| rat | (((((.((((((.....((((((.((((....((((.(((.(((..(((((.........)))))..))))))))))....))))....))))))....)))))).....))))) | 0.970 -34.10 | ||
| rat | chromosome:5:114517743:114517857:-1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH (11 loci)
sblock1369 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.246 | no | no | 0.32/0.43 | 19/24/0.03 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 308 1 | 0 0 0 | 1 10 1 | 0 0 0 | 8 19 6 | 3 -6 7 | 5arm 3arm_loop 3arm | 20 39 39 | nd nd nd | 0.32 0.42 0.42 | 3 5 3 | 473 | 10 | 0 | -9 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------CACAACU------------------------------ | 461 | novel | |||||||||
| seed | ---------------------------------------AACACAA-------------------------------- | 7 | novel | |||||||||
| seed | ------------------------------------------ACAACUU----------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------------------GUGAAUU----------------- | 1 | novel | |||||||||
| seed | ------------------------------------AGCAACA----------------------------------- | 1 | novel | |||||||||
| seed | ---------UGUAAGG-------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------ACACAACTTCATCAGTGAA------------------- | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| --------------------------------------CAACACAACTTCATCAGTGA-------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATT----------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAAT------------------ | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------CAGCAACACAACTTCATCAGTGA-------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------AGTGAATTTCCCCATTGGA------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------CACAACTTCATCAGTGAATTTC--------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATTTC--------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------CAACACAACTTCATCAGTGAATTT---------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------CACAACTTCATCAGTGAAT------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| --------TTGTAAGGTTTCATTCTTG--------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ccacccccttgtaaggtttcattcttgaaggaaagcagcaACACAACTTCATCAGTGAAtttccccattggaattggt | |||||||||||
| ****************************************************************************** | ||||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049496 ENSRNOG00000031160 LOC685793 | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042408 ENSRNOG00000031160 LOC685793 | |||||||||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000059958 ENSRNOG00000030545 LOC685793 | |||||||||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000049483 ENSRNOG00000030545 LOC685793 | |||||||||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000039913 ENSRNOG00000030545 LOC685793 | |||||||||||
| rat | (((..((..((...((.((((((..(((((................)))))..))))))...)).))..))...))). | 0.820 -14.59 | ||||||||||
| rat | chromosome:1:50082713:50082790:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000039913|ENSRNOG00000030545 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059959|ENSRNOG00000030545 ## Same_strand|Boundary_non-coding|ENSRNOT00000050327|ENSRNOG00000031160 ## Same_strand|Intronic_non-coding|ENSRNOT00000042408|ENSRNOG00000031160 ## Opposite_strand|Intronic_coding|ENSRNOT00000059958|ENSRNOG00000030545 ## ENSRNOG00000030545|protein_coding|LOC685793| ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock1435 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.137 | no | no | 0.32/0.43 | 19/24/0.03 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 308 1 | 0 0 0 | 1 10 1 | 0 0 0 | 4 13 0 | 3 -6 7 | 5arm 3arm_loop 3arm | 20 39 39 | nd nd nd | 0.32 0.42 0.39 | 3 5 3 | 473 | 10 | 0 | -9 |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------CACAACU------------------------ | 461 | novel | |||||||||
| seed | -----------------------------------AACACAA-------------------------- | 7 | novel | |||||||||
| seed | --------------------------------------ACAACUU----------------------- | 2 | novel | |||||||||
| seed | --------------------------------AGCAACA----------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------------------GUGAAUU----------- | 1 | novel | |||||||||
| seed | -----UGUAAGG-------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------ACACAACTTCATCAGTGAA------------- | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| ----------------------------------CAACACAACTTCATCAGTGA-------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| ------------------------------------ACACAACTTCATCAGTGAATT----------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| -------------------------------CAGCAACACAACTTCATCAGTGA-------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| ----TTGTAAGGTTTCATTCTTG--------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------CACAACTTCATCAGTGAAT------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------AGTGAATTTCCCCATTGGA | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------ACACAACTTCATCAGTGAATTTC--------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------CAACACAACTTCATCAGTGAATTT---------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------ACACAACTTCATCAGTGAAT------------ | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------CACAACTTCATCAGTGAATTTC--------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ccccttgtaaggtttcattcttgaaggaaagcagcaACACAACTTCATCAGTGAAtttccccattgga | |||||||||||
| ******************************************************************** | ||||||||||||
| rat | .((..((...((.((((((..(((((................)))))..))))))...)).))..)). | 0.960 -12.99 | ||||||||||
| rat | chromosome:1:51247287:51247354:1 | intergenic |
sblock1558 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.252 | no | no | 0.32/0.45 | 19/24/0.03 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 308 1 1 | 0 0 0 0 | 1 10 1 1 | 0 0 0 0 | 8 22 9 0 | 3 -6 7 15 | 5arm 3arm_loop 3arm 3arm | 20 39 39 39 | nd nd nd nd | 0.32 0.42 0.42 0.53 | 3 5 3 4 | 474 | 10 | 0 | -9 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------CACAACU--------------------------------- | 461 | novel | |||||||||
| seed | ---------------------------------------AACACAA----------------------------------- | 7 | novel | |||||||||
| seed | ------------------------------------------ACAACUU-------------------------------- | 2 | novel | |||||||||
| seed | --------------------------------------------------------------CCCCAUU------------ | 1 | novel | |||||||||
| seed | ---------UGUAAGG----------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------------AGCAACA-------------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------------------------------GUGAAUU-------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------ACACAACTTCATCAGTGAA---------------------- | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| --------------------------------------CAACACAACTTCATCAGTGA----------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATT-------------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| -----------------------------------------CACAACTTCATCAGTGAAT--------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------TCCCCATTGGAATTGGTTCA | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------CACAACTTCATCAGTGAATTTC------------------ | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------AGTGAATTTCCCCATTGGA--------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------CAACACAACTTCATCAGTGAATTT------------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATTTC------------------ | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAAT--------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------CAGCAACACAACTTCATCAGTGA----------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------TTGTAAGGTTTCATTCTTG------------------------------------------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ccacccccttgtaaggtttcattcttgaaggaaagcagcaACACAACTTCATCAGTGAAtttccccattggaattggttca | |||||||||||
| ********************************************************************************* | ||||||||||||
| ------------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||||||||||
| rat | (((..((..((...((.((((((..(((((................)))))..))))))...)).))..))...))).... | 0.810 -14.59 | ||||||||||
| rat | chromosome:1:51939534:51939614:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1636 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.246 | no | no | 0.32/0.43 | 19/24/0.03 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 308 1 | 0 0 0 | 1 10 1 | 0 0 0 | 8 19 6 | 3 -6 7 | 5arm 3arm_loop 3arm | 20 39 39 | nd nd nd | 0.32 0.42 0.42 | 3 5 3 | 473 | 10 | 0 | -9 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------CACAACU------------------------------ | 461 | novel | |||||||||
| seed | ---------------------------------------AACACAA-------------------------------- | 7 | novel | |||||||||
| seed | ------------------------------------------ACAACUU----------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------------------GUGAAUU----------------- | 1 | novel | |||||||||
| seed | ------------------------------------AGCAACA----------------------------------- | 1 | novel | |||||||||
| seed | ---------UGUAAGG-------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------ACACAACTTCATCAGTGAA------------------- | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| --------------------------------------CAACACAACTTCATCAGTGA-------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATT----------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAAT------------------ | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------CAGCAACACAACTTCATCAGTGA-------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------AGTGAATTTCCCCATTGGA------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------CACAACTTCATCAGTGAATTTC--------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATTTC--------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------CAACACAACTTCATCAGTGAATTT---------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------CACAACTTCATCAGTGAAT------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| --------TTGTAAGGTTTCATTCTTG--------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ccacccccttgtaaggtttcattcttgaaggaaagcagcaACACAACTTCATCAGTGAAtttccccattggaattggt | |||||||||||
| ****************************************************************************** | ||||||||||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000059909 ENSRNOG00000030267 RGD1561185_predicted | |||||||||||
| rat | (((..((..((...((.((((((..(((((................)))))..))))))...)).))..))...))). | 0.820 -14.59 | ||||||||||
| rat | chromosome:1:52590493:52590570:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000048991|ENSRNOG00000030267 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059909|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
sblock1638 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.246 | no | no | 0.32/0.43 | 19/24/0.03 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 308 1 | 0 0 0 | 1 10 1 | 0 0 0 | 8 19 6 | 3 -6 7 | 5arm 3arm_loop 3arm | 20 39 39 | nd nd nd | 0.32 0.42 0.42 | 3 5 3 | 473 | 10 | 0 | -9 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------CACAACU------------------------------ | 461 | novel | |||||||||
| seed | ---------------------------------------AACACAA-------------------------------- | 7 | novel | |||||||||
| seed | ------------------------------------------ACAACUU----------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------------------GUGAAUU----------------- | 1 | novel | |||||||||
| seed | ------------------------------------AGCAACA----------------------------------- | 1 | novel | |||||||||
| seed | ---------UGUAAGG-------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------ACACAACTTCATCAGTGAA------------------- | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| --------------------------------------CAACACAACTTCATCAGTGA-------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATT----------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAAT------------------ | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------CAGCAACACAACTTCATCAGTGA-------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------AGTGAATTTCCCCATTGGA------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------CACAACTTCATCAGTGAATTTC--------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATTTC--------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------CAACACAACTTCATCAGTGAATTT---------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------CACAACTTCATCAGTGAAT------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| --------TTGTAAGGTTTCATTCTTG--------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ccacccccttgtaaggtttcattcttgaaggaaagcagcaACACAACTTCATCAGTGAAtttccccattggaattggt | |||||||||||
| ****************************************************************************** | ||||||||||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000059909 ENSRNOG00000030267 RGD1561185_predicted | |||||||||||
| rat | (((..((..((...((.((((((..(((((................)))))..))))))...)).))..))...))). | 0.820 -14.59 | ||||||||||
| rat | chromosome:1:52591418:52591495:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000048991|ENSRNOG00000030267 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059909|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
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