other hairpins
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH (11 loci)
sblock1713 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.246 | no | no | 0.32/0.43 | 19/24/0.03 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 308 1 | 0 0 0 | 1 10 1 | 0 0 0 | 8 19 6 | 3 -6 7 | 5arm 3arm_loop 3arm | 20 39 39 | nd nd nd | 0.32 0.42 0.42 | 3 5 3 | 473 | 10 | 0 | -9 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------CACAACU------------------------------ | 461 | novel | |||||||||
| seed | ---------------------------------------AACACAA-------------------------------- | 7 | novel | |||||||||
| seed | ------------------------------------------ACAACUU----------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------------------GUGAAUU----------------- | 1 | novel | |||||||||
| seed | ------------------------------------AGCAACA----------------------------------- | 1 | novel | |||||||||
| seed | ---------UGUAAGG-------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------ACACAACTTCATCAGTGAA------------------- | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| --------------------------------------CAACACAACTTCATCAGTGA-------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATT----------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAAT------------------ | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------CAGCAACACAACTTCATCAGTGA-------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------AGTGAATTTCCCCATTGGA------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------CACAACTTCATCAGTGAATTTC--------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATTTC--------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------CAACACAACTTCATCAGTGAATTT---------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------CACAACTTCATCAGTGAAT------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| --------TTGTAAGGTTTCATTCTTG--------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ccacccccttgtaaggtttcattcttgaaggaaagcagcaACACAACTTCATCAGTGAAtttccccattggaattggt | |||||||||||
| ****************************************************************************** | ||||||||||||
| rat | (((..((..((...((.((((((..(((((................)))))..))))))...)).))..))...))). | 0.820 -14.59 | ||||||||||
| rat | chromosome:1:52913518:52913595:1 | intergenic |
sblock1715 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.246 | no | no | 0.32/0.43 | 19/24/0.03 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 308 1 | 0 0 0 | 1 10 1 | 0 0 0 | 8 19 6 | 3 -6 7 | 5arm 3arm_loop 3arm | 20 39 39 | nd nd nd | 0.32 0.42 0.42 | 3 5 3 | 473 | 10 | 0 | -9 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------CACAACU------------------------------ | 461 | novel | |||||||||
| seed | ---------------------------------------AACACAA-------------------------------- | 7 | novel | |||||||||
| seed | ------------------------------------------ACAACUU----------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------------------GUGAAUU----------------- | 1 | novel | |||||||||
| seed | ------------------------------------AGCAACA----------------------------------- | 1 | novel | |||||||||
| seed | ---------UGUAAGG-------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------ACACAACTTCATCAGTGAA------------------- | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| --------------------------------------CAACACAACTTCATCAGTGA-------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATT----------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAAT------------------ | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------CAGCAACACAACTTCATCAGTGA-------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------AGTGAATTTCCCCATTGGA------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------CACAACTTCATCAGTGAATTTC--------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATTTC--------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------CAACACAACTTCATCAGTGAATTT---------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------CACAACTTCATCAGTGAAT------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| --------TTGTAAGGTTTCATTCTTG--------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ccacccccttgtaaggtttcattcttgaaggaaagcagcaACACAACTTCATCAGTGAAtttccccattggaattggt | |||||||||||
| ****************************************************************************** | ||||||||||||
| rat | (((..((..((...((.((((((..(((((................)))))..))))))...)).))..))...))). | 0.820 -14.59 | ||||||||||
| rat | chromosome:1:52916925:52917002:1 | intergenic |
sblock238 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.246 | no | no | 0.32/0.43 | 19/24/0.03 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 308 1 | 0 0 0 | 1 10 1 | 0 0 0 | 8 19 6 | 3 -6 7 | 5arm 3arm_loop 3arm | 20 39 39 | nd nd nd | 0.32 0.42 0.42 | 3 5 3 | 473 | 10 | 0 | -9 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------CACAACU------------------------------ | 461 | novel | |||||||||
| seed | ---------------------------------------AACACAA-------------------------------- | 7 | novel | |||||||||
| seed | ------------------------------------------ACAACUU----------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------------------GUGAAUU----------------- | 1 | novel | |||||||||
| seed | ------------------------------------AGCAACA----------------------------------- | 1 | novel | |||||||||
| seed | ---------UGUAAGG-------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------ACACAACTTCATCAGTGAA------------------- | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| --------------------------------------CAACACAACTTCATCAGTGA-------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATT----------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAAT------------------ | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------CAGCAACACAACTTCATCAGTGA-------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------AGTGAATTTCCCCATTGGA------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------CACAACTTCATCAGTGAATTTC--------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATTTC--------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------CAACACAACTTCATCAGTGAATTT---------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------CACAACTTCATCAGTGAAT------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| --------TTGTAAGGTTTCATTCTTG--------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ccacccccttgtaaggtttcattcttgaaggaaagcagcaACACAACTTCATCAGTGAAtttccccattggaattggt | |||||||||||
| ****************************************************************************** | ||||||||||||
| rat | (((..((..((...((.((((((..(((((................)))))..))))))...)).))..))...))). | 0.820 -14.59 | ||||||||||
| rat | chromosome:1:50003774:50003851:-1 | intergenic |
sblock252 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.246 | no | no | 0.32/0.43 | 19/24/0.03 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 308 1 | 0 0 0 | 1 10 1 | 0 0 0 | 8 19 6 | 3 -6 7 | 5arm 3arm_loop 3arm | 20 39 39 | nd nd nd | 0.32 0.42 0.42 | 3 5 3 | 473 | 10 | 0 | -9 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------CACAACU------------------------------ | 461 | novel | |||||||||
| seed | ---------------------------------------AACACAA-------------------------------- | 7 | novel | |||||||||
| seed | ------------------------------------------ACAACUU----------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------------------GUGAAUU----------------- | 1 | novel | |||||||||
| seed | ------------------------------------AGCAACA----------------------------------- | 1 | novel | |||||||||
| seed | ---------UGUAAGG-------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------ACACAACTTCATCAGTGAA------------------- | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| --------------------------------------CAACACAACTTCATCAGTGA-------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATT----------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAAT------------------ | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------CAGCAACACAACTTCATCAGTGA-------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------AGTGAATTTCCCCATTGGA------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------CACAACTTCATCAGTGAATTTC--------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATTTC--------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------CAACACAACTTCATCAGTGAATTT---------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------CACAACTTCATCAGTGAAT------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| --------TTGTAAGGTTTCATTCTTG--------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ccacccccttgtaaggtttcattcttgaaggaaagcagcaACACAACTTCATCAGTGAAtttccccattggaattggt | |||||||||||
| ****************************************************************************** | ||||||||||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000049496 ENSRNOG00000031160 LOC685793 | |||||||||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000042408 ENSRNOG00000031160 LOC685793 | |||||||||||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<------------------------------------------------------------ | ENSRNOT00000050327 ENSRNOG00000031160 LOC685793 | |||||||||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000040838 ENSRNOG00000031160 LOC685793 | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000059958 ENSRNOG00000030545 LOC685793 | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049483 ENSRNOG00000030545 LOC685793 | |||||||||||
| rat | (((..((..((...((.((((((..(((((................)))))..))))))...)).))..))...))). | 0.820 -14.59 | ||||||||||
| rat | chromosome:1:50132830:50132907:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000049483|ENSRNOG00000030545 ## Same_strand|Intronic_coding|ENSRNOT00000059958|ENSRNOG00000030545 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000050327|ENSRNOG00000031160 ## Same_strand|Boundary_non-coding|ENSRNOT00000039913|ENSRNOG00000030545 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000042408|ENSRNOG00000031160 ## ENSRNOG00000030545|protein_coding|LOC685793| ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock340 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.246 | no | no | 0.32/0.43 | 19/24/0.03 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 308 1 | 0 0 0 | 1 10 1 | 0 0 0 | 8 19 6 | 3 -6 7 | 5arm 3arm_loop 3arm | 20 39 39 | nd nd nd | 0.32 0.42 0.42 | 3 5 3 | 473 | 10 | 0 | -9 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------CACAACU------------------------------ | 461 | novel | |||||||||
| seed | ---------------------------------------AACACAA-------------------------------- | 7 | novel | |||||||||
| seed | ------------------------------------------ACAACUU----------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------------------GUGAAUU----------------- | 1 | novel | |||||||||
| seed | ------------------------------------AGCAACA----------------------------------- | 1 | novel | |||||||||
| seed | ---------UGUAAGG-------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------ACACAACTTCATCAGTGAA------------------- | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| --------------------------------------CAACACAACTTCATCAGTGA-------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATT----------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAAT------------------ | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------CAGCAACACAACTTCATCAGTGA-------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------AGTGAATTTCCCCATTGGA------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------CACAACTTCATCAGTGAATTTC--------------- | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATTTC--------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------CAACACAACTTCATCAGTGAATTT---------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------CACAACTTCATCAGTGAAT------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| --------TTGTAAGGTTTCATTCTTG--------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ccacccccttgtaaggtttcattcttgaaggaaagcagcaACACAACTTCATCAGTGAAtttccccattggaattggt | |||||||||||
| ****************************************************************************** | ||||||||||||
| rat | (((..((..((...((.((((((..(((((................)))))..))))))...)).))..))...))). | 0.820 -14.59 | ||||||||||
| rat | chromosome:1:50588752:50588829:-1 | intergenic |
sblock395 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.252 | no | no | 0.32/0.45 | 19/24/0.03 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 308 1 1 | 0 0 0 0 | 1 10 1 1 | 0 0 0 0 | 8 22 9 0 | 3 -6 7 15 | 5arm 3arm_loop 3arm 3arm | 20 39 39 39 | nd nd nd nd | 0.32 0.42 0.42 0.53 | 3 5 3 4 | 474 | 10 | 0 | -9 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------CACAACU--------------------------------- | 461 | novel | |||||||||
| seed | ---------------------------------------AACACAA----------------------------------- | 7 | novel | |||||||||
| seed | ------------------------------------------ACAACUU-------------------------------- | 2 | novel | |||||||||
| seed | --------------------------------------------------------------CCCCAUU------------ | 1 | novel | |||||||||
| seed | ---------UGUAAGG----------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------------AGCAACA-------------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------------------------------GUGAAUU-------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------ACACAACTTCATCAGTGAA---------------------- | 19 | 40 | 25 | 16 | 14 | 3 | 8 | 7 | 23 | 308 | 13 | |
| --------------------------------------CAACACAACTTCATCAGTGA----------------------- | 20 | - | 1 | 1 | - | - | - | - | 1 | 3 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATT-------------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| -----------------------------------------CACAACTTCATCAGTGAAT--------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------TCCCCATTGGAATTGGTTCA | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------CACAACTTCATCAGTGAATTTC------------------ | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------AGTGAATTTCCCCATTGGA--------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------CAACACAACTTCATCAGTGAATTT------------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------ACACAACTTCATCAGTGAATTTC------------------ | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------ACACAACTTCATCAGTGAAT--------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------CAGCAACACAACTTCATCAGTGA----------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| --------TTGTAAGGTTTCATTCTTG------------------------------------------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ccacccccttgtaaggtttcattcttgaaggaaagcagcaACACAACTTCATCAGTGAAtttccccattggaattggttca | |||||||||||
| ********************************************************************************* | ||||||||||||
| rat | (((..((..((...((.((((((..(((((................)))))..))))))...)).))..))...))).... | 0.810 -14.59 | ||||||||||
| rat | chromosome:1:50855462:50855542:-1 | intergenic |
novel_lenNOK_cloningHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH (11 loci)
block297526 [novel_lenNOK_cloningHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.53/0.60 | 18/21/0.01 | 0.0 | 0.1 | 307 | 0 | 10 | 0 | 6 | 32 | 5arm | 3 | nd | 0.42 | 4 | 521 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -------ACAGCUC------------------------------------------------------------------------------------------------------ | 513 | miR-674 | |||||||||
| seed | --------CAGCUCC----------------------------------------------------------------------------------------------------- | 6 | novel | |||||||||
| seed | ------CACAGCU------------------------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------CACAGCTCCCATCTCAGA-------------------------------------------------------------------------------------------- | 18 | 98 | 80 | 16 | 34 | 35 | 27 | 23 | 30 | 12 | 23 | |
| ------CACAGCTCCCATCTCAGAG------------------------------------------------------------------------------------------- | 19 | 20 | 30 | 9 | 17 | 10 | 9 | 7 | 13 | 2 | 14 | |
| -------ACAGCTCCCATCTCAGAG------------------------------------------------------------------------------------------- | 18 | 2 | 1 | - | 1 | - | 1 | - | 1 | - | - | |
| ------CACAGCTCCCATCTCAGAGG------------------------------------------------------------------------------------------ | 20 | 1 | - | - | - | - | - | - | - | 1 | - | |
| ------CACAGCTCCCATCTCAGAGGA----------------------------------------------------------------------------------------- | 21 | 2 | - | - | - | - | - | - | - | - | - | |
| -----TCACAGCTCCCATCTCAGA-------------------------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | - | - | - | |
| -----TCACAGCTCCCATCTCAGAG------------------------------------------------------------------------------------------- | 20 | - | - | - | 1 | - | - | - | - | - | - | |
| rat | gtcgatCACAGCTCCCATCTCAGAGgaagtcctgctgctgtttccatggagtatctgaggatcaggatggagtgaaaggaggagaggcatttcaaggaggtgggagggggtcaggc | |||||||||||
| ******************************************************************************************************************** | ||||||||||||
| rat | (((((((....((((((((((....((((((((.((.((.(((.(((...((.((((.....))))))...))).))).)).))))).)))))...))))))))))..)))).))) | 1.000 -43.40 | ||||||||||
| rat | chromosome:13:28709444:28709559:1 | intergenic |
block413720 [novel_lenNOK_cloningHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.67/0.72 | 18/19/0.00 | 0.0 | 0.0 | 76 | 0 | 2 | 0 | 14 | 21 | 3arm | 1 | nd | 0.39 | 4 | 96 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------------------AAGGCAC------------------------ | 92 | miR-124 | |
| seed | --------------------------------------------------------------------------------------UAAGGCA------------------------- | 4 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --------------------------------------------------------------------------------------TAAGGCACCCCCACCCGC-------------- | 18 | 76 | 15 | |
| -------------------------------------------------------------------------------------TTAAGGCACCCCCACCCG--------------- | 18 | 1 | 1 | |
| -------------------------------------------------------------------------------------TTAAGGCACCCCCACCCGC-------------- | 19 | - | 2 | |
| --------------------------------------------------------------------------------------TAAGGCACCCCCACCCGCT------------- | 19 | 1 | - | |
| rat | ccctgctccaagttgaagcttctccttcctcaggggggccggaccactgaactaatgagccccacctccaagaactggtccccactTAAGGCACCCCCACCCGCtttacttgggcagg | |||
| ********************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000008788 ENSRNOG00000006394 Tbc1d10a | |||
| rat | .(((((.(((((.((((((.............((((((((((((((.....((...(((......)))..))...))))))........))).)))))....)))))))))))))))) | 0.660 -43.03 | ||
| rat | chromosome:14:84913469:84913586:1 | Same_strand|Intronic_non-coding|ENSRNOT00000008788|ENSRNOG00000006394 ## ENSRNOG00000006394|protein_coding|Tbc1d10a|TBC1 domain family, member 10a [Source:RefSeq_peptide;Acc:NP_001015022] |
block540366 [novel_lenNOK_cloningHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.39/0.45 | 18/22/0.01 | 0.0 | 0.0 | 112 | 0 | 10 | 0 | 14 | 23 | 3arm | 1 | nd | 0.33 | 4 | 145 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------------------------------------------------------------UCAAGUA------------------------ | 145 | miR-26a/26b | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------------TTCAAGTAAGGGTCCTAT-------------- | 18 | 34 | 24 | 8 | 7 | 12 | 5 | 17 | 13 | 12 | 6 | |
| --------------------------------------------------------------------------------TTCAAGTAAGGGTCCTATG------------- | 19 | - | - | - | - | 2 | - | 2 | 1 | - | 1 | |
| --------------------------------------------------------------------------------TTCAAGTAAGGGTCCTATGTCG---------- | 22 | - | 1 | - | - | - | - | - | - | - | - | |
| rat | tggcatgccatgacataccttcgttgaaattcaaaaattaaaaacaatttataaaattaaacccactgtcaatatcaattTTCAAGTAAGGGTCCTATgtcgtggctgccac | |||||||||||
| **************************************************************************************************************** | ||||||||||||
| rat | (((((.(((((((((((((((..((((((..................((((......))))..................))))))..))))....)))))))))))))))). | 0.460 -31.12 | ||||||||||
| rat | chromosome:16:54874557:54874668:-1 | intergenic |
block990608 [novel_lenNOK_cloningHIGH_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.32/0.36 | 18/22/0.03 | 0.0 | 0.0 | 1263 | 0 | 10 | 0 | 22 | 12 | 3arm | 1 | nd | 0.33 | 4 | 2116 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------------------------------------------------------AAAGUGG-------------------------------- | 2116 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------------------------CAAAGTGGACAATACATT---------------------- | 18 | 124 | 85 | 63 | 129 | 454 | 415 | 86 | 111 | 187 | 207 | |
| -------------------------------------------------------------------------CAAAGTGGACAATACATTT--------------------- | 19 | 6 | 20 | 3 | 10 | 93 | 24 | 12 | 4 | 18 | 10 | |
| -------------------------------------------------------------------------CAAAGTGGACAATACATTTCA------------------- | 21 | 2 | 3 | 1 | 2 | 5 | 10 | 1 | 4 | 1 | 3 | |
| -------------------------------------------------------------------------CAAAGTGGACAATACATTTC-------------------- | 20 | 2 | - | 1 | - | 8 | 6 | 1 | - | 1 | 3 | |
| -------------------------------------------------------------------------CAAAGTGGACAATACATTTCAG------------------ | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| rat | tggtggagggaggataggacagagaatttgttcaacttgttcttttccccagtttcagagtacagaaaaagccCAAAGTGGACAATACATTtcaggtccatatcctcccagct | |||||||||||
| ***************************************************************************************************************** | ||||||||||||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000014573 ENSRNOG00000010803 Gabra5 | |||||||||||
| rat | .(((...(((((((((((((.((((..(((((((..(((..(((((.....((........))...)))))..)))..)))))))....))))..)))).))))))))).))) | 1.000 -36.30 | ||||||||||
| rat | chromosome:1:108950598:108950710:1 | Opposite_strand|Intronic_coding|ENSRNOT00000014573|ENSRNOG00000010803 ## ENSRNOG00000010803|protein_coding|Gabra5|Gamma-aminobutyric acid receptor subunit alpha-5 precursor (GABA(A) receptor subunit alpha-5). [Source:UniProtKB/Swiss-Prot;Acc:P19969] |
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