other hairpins
novel_lenNOK_cloningOK_multiarm (11 loci)
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap (11 loci)
sblock8465 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.830 | no | no | 0.17/0.45 | 18/25/0.56 | 0.0 3.2 0.0 | 0.0 1.3 0.0 | 1 34 1 | 0 0 0 | 1 9 1 | 0 0 0 | 0 37 36 | 41 -4 -2 | 5arm 5arm_loop_3arm 3arm_loop | 1 255 255 | nd nd nd | 0.50 0.26 0.26 | 4 3 3 | 36 | 9 | 0 | -1 |
| reads | miRBase family seed | ||||||||||
| seed | ---------------------------------------UUUUUUU------------------------------------------------------------------------ | 11 | novel | ||||||||
| seed | -------------------------------------------UUUUUUU-------------------------------------------------------------------- | 7 | novel | ||||||||
| seed | ------------------------------------------UUUUUUU--------------------------------------------------------------------- | 5 | novel | ||||||||
| seed | --------------------------------------UUUUUUU------------------------------------------------------------------------- | 3 | novel | ||||||||
| seed | ----------------------------------------UUUUUUU----------------------------------------------------------------------- | 3 | novel | ||||||||
| seed | ---------------------------------------------UUUUUUU------------------------------------------------------------------ | 3 | novel | ||||||||
| seed | --------------------------------------------UUUUUUU------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ----------------------------------------------------------------GCCACAA----------------------------------------------- | 1 | novel | ||||||||
| seed | ------------------------------------------------UUUUUUU--------------------------------------------------------------- | 1 | novel | ||||||||
| seed | -CCGACAG-------------------------------------------------------------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------TTTTTTTTTTTTTTTTTTGGGGG--------------------------------------------------------- | 23 | 2 | 1 | 1 | - | - | 1 | - | 1 | - | |
| ------------------------------------------TTTTTTTTTTTTTTGGGGG--------------------------------------------------------- | 19 | 2 | - | - | - | - | 1 | 1 | 1 | - | |
| -----------------------------------------TTTTTTTTTTTTTTTGGGG---------------------------------------------------------- | 19 | 2 | 1 | - | 1 | - | - | - | - | - | |
| --------------------------------------TTTTTTTTTTTTTTTTTTGGGG---------------------------------------------------------- | 22 | 1 | - | - | - | 1 | 2 | - | - | - | |
| -------------------------------------TTTTTTTTTTTTTTTTTTTGGGG---------------------------------------------------------- | 23 | 2 | 1 | - | - | - | - | - | - | - | |
| --------------------------------------------TTTTTTTTTTTTGGGGGTT------------------------------------------------------- | 19 | - | - | - | - | - | 2 | - | 1 | - | |
| ------------------------------------------TTTTTTTTTTTTTTGGGGGT-------------------------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | 1 | |
| --------------------------------------TTTTTTTTTTTTTTTTTTGGGGGTT------------------------------------------------------- | 25 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------TTTTTTTTTTTTTGGGGGT-------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------TTTTTTTTTGGGGGTTTG----------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------TTTTTTTTTTTTTTTTTGGGGGTT------------------------------------------------------- | 24 | - | - | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------TGCCACAAAGAATCTAAGG------------------------------------ | 19 | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------TTTTTTTTTTTTTTTTTGGGGG--------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------TTTTTTTTTTTTTTTGGGGGTTT------------------------------------------------------ | 23 | - | - | - | - | - | - | - | - | 1 | |
| GCCGACAGATATGTGATACT-------------------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------TTTTTTTTTTTTTTTTTGGGGGT-------------------------------------------------------- | 23 | - | - | - | - | - | 1 | - | - | - | |
| rat | GCCGACAGATATGTGATACTtggtgtgggttttttttTTTTTTTTTTTTTTTTTTTGGGGGTTTGCCACAAAGAATCTAAGGgaacagatcagagtgactaagatgtacagaaatgtg | ||||||||||
| ********************************************************************************************************************** | |||||||||||
| rat | ....(((....((((...((((((......((((..(((.(((((((...(((((((..((....)).)))))))...))))))).)))..))))..))))))...))))....))). | 0.770 -20.30 | |||||||||
| rat | chromosome:4:116142442:116142559:-1 | intergenic ## {Repeats: (A)n 1 20 -1 class=Simple_repeat,dust 116142504 116142523 0 class=dust,trf 1 20 0 class=trf,(A)n 1 27 -1 class=Simple_repeat} |
sblock1231 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.260 | no | no | 0.37/0.58 | 19/23/0.62 | 0.0 3.0 0.0 2.7 | 0.5 2.7 0.0 1.7 | 2 3 1 7 | 0 0 0 0 | 1 2 1 3 | 0 0 0 0 | 0 6 21 12 | 27 15 5 -4 | 5arm 5arm 5arm 3arm_loop | 23 27 27 29 | nd nd nd nd | 0.74 0.55 0.38 0.16 | 10 10 4 1 | 13 | 4 | -3 | -2 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------ACUGUCU-------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------GUCUCAG----------------------- | 2 | novel | |||
| seed | -CUCCACA-------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ------------------------------------------------------CACUGUC--------------------------- | 2 | novel | |||
| seed | -------------AGGACCA-------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------AUUGUGG----------------------------------------------------------- | 1 | novel | |||
| seed | -------AGUCAAA-------------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------CAAAGGA----------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------UCACUGU---------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| -----------------------------------------------------TCACTGTCTCAGACCCTCCA--------------- | 20 | - | - | 1 | 1 | |
| ---------------------------------------------------------TGTCTCAGACCCTCCAAAT------------ | 19 | - | - | - | 2 | |
| ------------AAGGACCAATATTGTGGTAG-------------------------------------------------------- | 20 | - | - | - | 1 | |
| CCTCCACAGTCAAAGGACCA-------------------------------------------------------------------- | 20 | - | - | - | 1 | |
| ------------------------------------------------------CACTGTCTCAGACCCTCCA--------------- | 19 | - | - | - | 1 | |
| ---------------------TATTGTGGTAGGGTGTCTGTG---------------------------------------------- | 21 | - | - | - | 1 | |
| ------------------------------------------------------CACTGTCTCAGACCCTCCAA-------------- | 20 | - | - | 1 | - | |
| CCTCCACAGTCAAAGGACC--------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| ---------TCAAAGGACCAATATTGTG------------------------------------------------------------ | 19 | - | - | - | 1 | |
| ------CAGTCAAAGGACCAATATTG-------------------------------------------------------------- | 20 | - | 1 | - | - | |
| ----------------------------------------------------TTCACTGTCTCAGACCCTCCAAA------------- | 23 | 1 | - | - | - | |
| rat | CCTCCACAGTCAAAGGACCAATATTGTGGTAGGGTGTCTGTGgtcaggcaacTTCACTGTCTCAGACCCTCCAAATtgcaagaccttt | |||||
| **************************************************************************************** | ||||||
| rat | ...........(((((..........(((.((((..((((.((.(((.........))))).)))))))))))..........))))) | 0.460 -20.85 | ||||
| rat | chromosome:1:47726721:47726808:1 | intergenic ## {Repeats: trf 1 12 0 class=trf} |
sblock1497 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.624 | no | no | 0.37/0.58 | 18/25/0.36 | 0.2 1.2 1.7 1.7 | 2.2 1.0 2.7 0.3 | 4 10 3 6 | 0 0 0 0 | 3 2 2 3 | 0 0 0 0 | 21 30 17 7 | 5 -7 6 16 | 5arm 5arm_loop 3arm 3arm | 25 37 37 37 | nd nd nd nd | 0.36 0.40 0.36 0.16 | 4 4 4 1 | 25 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | -------------------------------GCUUCUU------------------------------------------------------------------- | 8 | novel | |||
| seed | --------------------------------------------------------------------------------GUCCCAG------------------ | 4 | novel | |||
| seed | ---------------------------------------------------------------------------CCACUGU----------------------- | 4 | novel | |||
| seed | ----------------------GGCACCA---------------------------------------------------------------------------- | 3 | novel | |||
| seed | -----------------------------------------------------------------AGCAGAA--------------------------------- | 2 | novel | |||
| seed | -------------------------------------UCUUUGC------------------------------------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------------AACUUCC---------------------------- | 1 | novel | |||
| seed | -----------------------GCACCAU--------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| ------------------------------TGCTTCTTCTTTGCATGCACTTTGA-------------------------------------------------- | 25 | - | - | - | 6 | |
| -------------------------------------------------------------------------------TGTCCCAGCACCTGAACTA------- | 19 | - | - | - | 4 | |
| --------------------------------------------------------------------------TCCACTGTCCCAGCACCTGAACT-------- | 23 | 1 | - | 1 | 2 | |
| ------------------------------TGCTTCTTCTTTGCATGCAC------------------------------------------------------- | 20 | 2 | - | - | - | |
| ------------------------------------TTCTTTGCATGCACTTTGA-------------------------------------------------- | 19 | - | - | - | 2 | |
| ---------------------TGGCACCATTGCTTCTTCTTT--------------------------------------------------------------- | 21 | 1 | - | - | - | |
| ---------------------------------------------------------------------GAACTTCCACTGTCCCAGC----------------- | 19 | - | - | - | 1 | |
| ----------------------GGCACCATTGCTTCTTCTT---------------------------------------------------------------- | 19 | - | - | 1 | - | |
| ----------------------------------------------------------------TAGCAGAACTTCCACTGTCCCA------------------- | 22 | - | 1 | - | - | |
| ---------------------TGGCACCATTGCTTCTTCTTTG-------------------------------------------------------------- | 22 | - | 1 | - | - | |
| ---------------------TGGCACCATTGCTTCTTC------------------------------------------------------------------ | 18 | - | - | 1 | - | |
| ----------------------------------------------------------------TAGCAGAACTTCCACTGTC---------------------- | 19 | - | - | - | 1 | |
| rat | tttgccatggtcatgtttggctggcaccatTGCTTCTTCTTTGCATGCACTTTGAtaagccctgtagcagaactTCCACTGTCCCAGCACCTGAACTAtcccaag | |||||
| ********************************************************************************************************* | ||||||
| ------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||||
| rat | .(((..(((((((.((...(((((.((...((....(((((((((.((..........))..))))).))))....))..)).))))))).))).))))..))). | 0.410 -18.70 | ||||
| rat | chromosome:1:51597951:51598055:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock155 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.178 | no | no | 0.37/0.58 | 19/23/0.62 | 0.0 3.0 0.0 2.7 | 0.5 2.7 0.0 1.7 | 2 3 1 7 | 0 0 0 0 | 1 2 1 3 | 0 0 0 0 | 2 8 23 28 | 27 15 5 -4 | 5arm 5arm 5arm 3arm_loop | 23 27 27 29 | nd nd nd nd | 0.37 0.53 0.38 0.16 | 4 10 4 1 | 13 | 4 | -3 | -2 |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------CACUGUC------------------------------------------- | 2 | novel | |||
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |||
| seed | ---------------------------------------------------------ACUGUCU------------------------------------------ | 2 | novel | |||
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |||
| seed | ---------------AGGACCA------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------UCACUGU-------------------------------------------- | 1 | novel | |||
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ------------------------AUUGUGG--------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | - | - | 2 | |
| -------------------------------------------------------TCACTGTCTCAGACCCTCCA------------------------------- | 20 | - | - | 1 | 1 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| --------------------------------------------------------CACTGTCTCAGACCCTCCA------------------------------- | 19 | - | - | - | 1 | |
| -----------------------TATTGTGGTAGGGTGTCTGTG-------------------------------------------------------------- | 21 | - | - | - | 1 | |
| --------------AAGGACCAATATTGTGGTAG------------------------------------------------------------------------ | 20 | - | - | - | 1 | |
| --------------------------------------------------------CACTGTCTCAGACCCTCCAA------------------------------ | 20 | - | - | 1 | - | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | - | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | - | 1 | - | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| ------------------------------------------------------TTCACTGTCTCAGACCCTCCAAA----------------------------- | 23 | 1 | - | - | - | |
| rat | gaCCTCCACAGTCAAAGGACCAATATTGTGGTAGGGTGTCTGTGgtcaggcaacTTCACTGTCTCAGACCCTCCAAATtgcaagacctttacgggcactggaagtt | |||||
| ********************************************************************************************************** | ||||||
| rat | (((.((((..((((((((..........(((.((((..((((.((.(((.........))))).)))))))))))..........)))))...)))..)))).))) | 0.450 -28.75 | ||||
| rat | chromosome:1:48365468:48365573:-1 | intergenic |
sblock1568 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.424 | no | no | 0.25/0.47 | 18/26/0.53 | 4.0 0.0 1.5 0.0 0.0 0.0 0.0 | 1.0 0.0 0.5 0.0 1.0 0.0 0.2 | 2 2 2 1 3 1 4 | 0 0 0 0 0 0 0 | 2 1 1 1 1 1 1 | 0 0 0 0 0 0 0 | 10 23 46 32 24 11 0 | 15 11 -15 2 8 23 32 | 5arm 5arm 5arm_loop_3arm 3arm 3arm 3arm 3arm | 32 32 32 32 32 32 32 | nd nd nd nd nd nd nd | 0.42 0.37 0.42 0.32 0.43 0.32 0.30 | 4 4 4 2 4 2 2 | 15 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------------GGGGUGG------------- | 4 | novel | |
| seed | ------------------------------------------------------------------CAAUUGG------------------------------------- | 3 | novel | |
| seed | ------------------------UUCAACC------------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------AAAAUUU------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------------------------------GAUGAUG---------------------- | 1 | novel | |
| seed | --------------------------------------------------AGAAUUG----------------------------------------------------- | 1 | novel | |
| seed | -----------AAAGCUC-------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------AUUAGAA-------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------CAGACUC------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTC- | 20 | - | 3 | |
| -----------------------------------------------------------------TCAATTGGAGAAGCAAGATGA------------------------ | 21 | - | 2 | |
| -----------------------TTTCAACCAGTTTCACGAT-------------------------------------------------------------------- | 19 | - | 2 | |
| ------------------TAAAATTTCAACCAGTTTCA------------------------------------------------------------------------ | 20 | 1 | - | |
| -------------------------------------------------TAGAATTGTCTCAGACTCA------------------------------------------ | 19 | - | 1 | |
| -----------------------------------------------------------------TCAATTGGAGAAGCAAGA--------------------------- | 18 | - | 1 | |
| ----------TAAAGCTCTAAAATTTCAACCAGTTT-------------------------------------------------------------------------- | 26 | - | 1 | |
| -----------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTCA | 21 | - | 1 | |
| -----------------------------------------------------------TCAGACTCAATTGGAGAAG-------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------------------------------AGATGATGTTGGGGTGGAT----------- | 19 | - | 1 | |
| ----------------------------------------------TATTAGAATTGTCTCAGACTC------------------------------------------- | 21 | - | 1 | |
| rat | gatgtatttgTAAAGCTCTAAAATTTCAACCAGTTTCACGATaagtTATTAGAATTGTCTCAGACTCAATTGGAGAAGCAAGATGATGTTGGGGTGGATGAAAAACTTCA | |||
| ************************************************************************************************************** | ||||
| ------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | ((.((.(((((...(((((((....(((....(((((.((((.((((...(((....)))..))))..))))..)))))....)))..)))))))..)))))..)).)). | 0.960 -19.00 | ||
| rat | chromosome:1:52000626:52000735:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1604 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.424 | no | no | 0.25/0.47 | 18/26/0.53 | 4.0 0.0 1.5 0.0 0.0 0.0 0.0 | 1.0 0.0 0.5 0.0 1.0 0.0 0.2 | 2 2 2 1 3 1 4 | 0 0 0 0 0 0 0 | 2 1 1 1 1 1 1 | 0 0 0 0 0 0 0 | 10 23 46 32 24 11 0 | 15 11 -15 2 8 23 32 | 5arm 5arm 5arm_loop_3arm 3arm 3arm 3arm 3arm | 32 32 32 32 32 32 32 | nd nd nd nd nd nd nd | 0.42 0.37 0.42 0.32 0.43 0.32 0.30 | 4 4 4 2 4 2 2 | 15 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------------GGGGUGG------------- | 4 | novel | |
| seed | ------------------------------------------------------------------CAAUUGG------------------------------------- | 3 | novel | |
| seed | ------------------------UUCAACC------------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------AAAAUUU------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------------------------------GAUGAUG---------------------- | 1 | novel | |
| seed | --------------------------------------------------AGAAUUG----------------------------------------------------- | 1 | novel | |
| seed | -----------AAAGCUC-------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------AUUAGAA-------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------CAGACUC------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTC- | 20 | - | 3 | |
| -----------------------------------------------------------------TCAATTGGAGAAGCAAGATGA------------------------ | 21 | - | 2 | |
| -----------------------TTTCAACCAGTTTCACGAT-------------------------------------------------------------------- | 19 | - | 2 | |
| ------------------TAAAATTTCAACCAGTTTCA------------------------------------------------------------------------ | 20 | 1 | - | |
| -------------------------------------------------TAGAATTGTCTCAGACTCA------------------------------------------ | 19 | - | 1 | |
| -----------------------------------------------------------------TCAATTGGAGAAGCAAGA--------------------------- | 18 | - | 1 | |
| ----------TAAAGCTCTAAAATTTCAACCAGTTT-------------------------------------------------------------------------- | 26 | - | 1 | |
| -----------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTCA | 21 | - | 1 | |
| -----------------------------------------------------------TCAGACTCAATTGGAGAAG-------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------------------------------AGATGATGTTGGGGTGGAT----------- | 19 | - | 1 | |
| ----------------------------------------------TATTAGAATTGTCTCAGACTC------------------------------------------- | 21 | - | 1 | |
| rat | gatgtatttgTAAAGCTCTAAAATTTCAACCAGTTTCACGATaagtTATTAGAATTGTCTCAGACTCAATTGGAGAAGCAAGATGATGTTGGGGTGGATGAAAAACTTCA | |||
| ************************************************************************************************************** | ||||
| ------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | ((.((.(((((...(((((((....(((....(((((.((((.((((...(((....)))..))))..))))..)))))....)))..)))))))..)))))..)).)). | 0.960 -19.00 | ||
| rat | chromosome:1:52232337:52232446:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1700 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.424 | no | no | 0.25/0.47 | 18/26/0.53 | 4.0 0.0 1.5 0.0 0.0 0.0 0.0 | 1.0 0.0 0.5 0.0 1.0 0.0 0.2 | 2 2 2 1 3 1 4 | 0 0 0 0 0 0 0 | 2 1 1 1 1 1 1 | 0 0 0 0 0 0 0 | 10 23 46 32 24 11 0 | 15 11 -15 2 8 23 32 | 5arm 5arm 5arm_loop_3arm 3arm 3arm 3arm 3arm | 32 32 32 32 32 32 32 | nd nd nd nd nd nd nd | 0.42 0.37 0.42 0.32 0.43 0.32 0.30 | 4 4 4 2 4 2 2 | 15 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------------GGGGUGG------------- | 4 | novel | |
| seed | ------------------------------------------------------------------CAAUUGG------------------------------------- | 3 | novel | |
| seed | ------------------------UUCAACC------------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------AAAAUUU------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------------------------------GAUGAUG---------------------- | 1 | novel | |
| seed | --------------------------------------------------AGAAUUG----------------------------------------------------- | 1 | novel | |
| seed | -----------AAAGCUC-------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------AUUAGAA-------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------CAGACUC------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTC- | 20 | - | 3 | |
| -----------------------------------------------------------------TCAATTGGAGAAGCAAGATGA------------------------ | 21 | - | 2 | |
| -----------------------TTTCAACCAGTTTCACGAT-------------------------------------------------------------------- | 19 | - | 2 | |
| ------------------TAAAATTTCAACCAGTTTCA------------------------------------------------------------------------ | 20 | 1 | - | |
| -------------------------------------------------TAGAATTGTCTCAGACTCA------------------------------------------ | 19 | - | 1 | |
| -----------------------------------------------------------------TCAATTGGAGAAGCAAGA--------------------------- | 18 | - | 1 | |
| ----------TAAAGCTCTAAAATTTCAACCAGTTT-------------------------------------------------------------------------- | 26 | - | 1 | |
| -----------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTCA | 21 | - | 1 | |
| -----------------------------------------------------------TCAGACTCAATTGGAGAAG-------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------------------------------AGATGATGTTGGGGTGGAT----------- | 19 | - | 1 | |
| ----------------------------------------------TATTAGAATTGTCTCAGACTC------------------------------------------- | 21 | - | 1 | |
| rat | gatgtatttgTAAAGCTCTAAAATTTCAACCAGTTTCACGATaagtTATTAGAATTGTCTCAGACTCAATTGGAGAAGCAAGATGATGTTGGGGTGGATGAAAAACTTCA | |||
| ************************************************************************************************************** | ||||
| rat | ((.((.(((((...(((((((....(((....(((((.((((.((((...(((....)))..))))..))))..)))))....)))..)))))))..)))))..)).)). | 0.960 -19.00 | ||
| rat | chromosome:1:52860995:52861104:1 | intergenic |
sblock2026 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.435 | no | no | 0.47/0.78 | 18/24/0.62 | 0.0 0.0 0.0 0.0 1.5 1.2 2.2 0.0 | 0.0 0.0 0.0 0.0 1.0 1.5 4.2 0.0 | 1 1 1 1 2 4 5 1 | 0 0 0 0 0 0 0 0 | 1 1 1 1 2 4 3 1 | 0 0 0 0 0 0 0 0 | 8 16 23 34 31 23 10 5 | 14 5 -2 -14 -3 5 16 26 | 5arm 5arm 5arm_loop 5arm_loop_3arm 3arm 3arm 3arm 3arm | 16 16 16 16 22 22 22 22 | nd nd nd nd nd nd nd nd | 0.25 0.48 0.57 0.50 0.55 0.48 0.37 0.47 | 3 6 6 4 6 6 4 5 | 16 | 8 | 0 | -3 |
| reads | miRBase family seed | |||||||||
| seed | -----------------------------------------------------GUCUCUC------------------------------------ | 2 | novel | |||||||
| seed | ---------------------------------------------------------------UCGCAGC-------------------------- | 2 | novel | |||||||
| seed | ------------------------CACUUUA----------------------------------------------------------------- | 1 | novel | |||||||
| seed | -----------------GGACUCC------------------------------------------------------------------------ | 1 | novel | |||||||
| seed | --------------------------------------------GCCUUAC--------------------------------------------- | 1 | novel | |||||||
| seed | -------------------------------------------------------------------------CGGGACC---------------- | 1 | novel | |||||||
| seed | -----------------------------------------------UUACAAG------------------------------------------ | 1 | novel | |||||||
| seed | ------------------------------------------------------------------CAGCCUC----------------------- | 1 | novel | |||||||
| seed | -------------------------------------------------------CUCUCCA---------------------------------- | 1 | novel | |||||||
| seed | ---------AGACCCG-------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ---------------------------------------------------------------------CCUCCGG-------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------------------------GCAGCCU------------------------ | 1 | novel | |||||||
| seed | ----------------------------------------------------AGUCUCU------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------CUUCCAG------------------------------------------------------ | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------AGTCTCTCCAGTCGCAGCCTC----------------------- | 21 | 1 | - | - | - | - | 1 | - | - | |
| ----------------------------------------------------------------CGCAGCCTCCGGGACCATCTC----------- | 21 | - | - | - | 1 | - | - | - | - | |
| ----------------GGGACTCCCACTTTATTCACT----------------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | - | |
| -------------------------------------------CGCCTTACAAGTCTCTCCAG--------------------------------- | 20 | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------CTTACAAGTCTCTCCAGTC------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------GTCGCAGCCTCCGGGACC---------------- | 18 | - | - | - | - | 1 | - | - | - | |
| ------------------------------------------------------TCTCTCCAGTCGCAGCCTC----------------------- | 19 | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------GCAGCCTCCGGGACCATCT------------ | 19 | - | 1 | - | - | - | - | - | - | |
| -----------------------CCACTTTATTCACTTCCAGCC---------------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------GTCGCAGCCTCCGGGACCATCTCC---------- | 24 | - | - | - | - | 1 | - | - | - | |
| --------------------------------------------------------------------GCCTCCGGGACCATCTCC---------- | 18 | - | 1 | - | - | - | - | - | - | |
| ----------------------------------ACTTCCAGCCGCCTTACAAGTC---------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | |
| --------CAGACCCGGGGACTCCCACT-------------------------------------------------------------------- | 20 | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------AAGTCTCTCCAGTCGCAGCC------------------------- | 20 | - | 1 | - | - | - | - | - | - | |
| ------------------------------------------------------------------------CCGGGACCATCTCCTTGCT----- | 19 | - | - | - | 1 | - | - | - | - | |
| rat | ggacggaaCAGACCCGGGGACTCCCACTTTATTCACTTCCAGCCGCCTTACAAGTCTCTCCAGTCGCAGCCTCCGGGACCATCTCCTTGCTgtctt | |||||||||
| ************************************************************************************************ | ||||||||||
| rat | ((((((...((((((((((.((...(((......((((..((....))...))))......)))...)).)))))))....))).....)))))). | 0.870 -20.40 | ||||||||
| rat | chromosome:1:146506527:146506622:1 | intergenic |
sblock364 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.424 | no | no | 0.25/0.47 | 18/26/0.53 | 4.0 0.0 1.5 0.0 0.0 0.0 0.0 | 1.0 0.0 0.5 0.0 1.0 0.0 0.2 | 2 2 2 1 3 1 4 | 0 0 0 0 0 0 0 | 2 1 1 1 1 1 1 | 0 0 0 0 0 0 0 | 10 23 46 32 24 11 0 | 15 11 -15 2 8 23 32 | 5arm 5arm 5arm_loop_3arm 3arm 3arm 3arm 3arm | 32 32 32 32 32 32 32 | nd nd nd nd nd nd nd | 0.42 0.37 0.42 0.32 0.43 0.32 0.30 | 4 4 4 2 4 2 2 | 15 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------------GGGGUGG------------- | 4 | novel | |
| seed | ------------------------------------------------------------------CAAUUGG------------------------------------- | 3 | novel | |
| seed | ------------------------UUCAACC------------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------AAAAUUU------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------------------------------GAUGAUG---------------------- | 1 | novel | |
| seed | --------------------------------------------------AGAAUUG----------------------------------------------------- | 1 | novel | |
| seed | -----------AAAGCUC-------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------AUUAGAA-------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------CAGACUC------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTC- | 20 | - | 3 | |
| -----------------------------------------------------------------TCAATTGGAGAAGCAAGATGA------------------------ | 21 | - | 2 | |
| -----------------------TTTCAACCAGTTTCACGAT-------------------------------------------------------------------- | 19 | - | 2 | |
| ------------------TAAAATTTCAACCAGTTTCA------------------------------------------------------------------------ | 20 | 1 | - | |
| -------------------------------------------------TAGAATTGTCTCAGACTCA------------------------------------------ | 19 | - | 1 | |
| -----------------------------------------------------------------TCAATTGGAGAAGCAAGA--------------------------- | 18 | - | 1 | |
| ----------TAAAGCTCTAAAATTTCAACCAGTTT-------------------------------------------------------------------------- | 26 | - | 1 | |
| -----------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTCA | 21 | - | 1 | |
| -----------------------------------------------------------TCAGACTCAATTGGAGAAG-------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------------------------------AGATGATGTTGGGGTGGAT----------- | 19 | - | 1 | |
| ----------------------------------------------TATTAGAATTGTCTCAGACTC------------------------------------------- | 21 | - | 1 | |
| rat | gatgtatttgTAAAGCTCTAAAATTTCAACCAGTTTCACGATaagtTATTAGAATTGTCTCAGACTCAATTGGAGAAGCAAGATGATGTTGGGGTGGATGAAAAACTTCA | |||
| ************************************************************************************************************** | ||||
| rat | ((.((.(((((...(((((((....(((....(((((.((((.((((...(((....)))..))))..))))..)))))....)))..)))))))..)))))..)).)). | 0.960 -19.00 | ||
| rat | chromosome:1:50784452:50784561:-1 | intergenic |
sblock372 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.424 | no | no | 0.25/0.47 | 18/26/0.53 | 4.0 0.0 1.5 0.0 0.0 0.0 0.0 | 1.0 0.0 0.5 0.0 1.0 0.0 0.2 | 2 2 2 1 3 1 4 | 0 0 0 0 0 0 0 | 2 1 1 1 1 1 1 | 0 0 0 0 0 0 0 | 10 23 46 32 24 11 0 | 15 11 -15 2 8 23 32 | 5arm 5arm 5arm_loop_3arm 3arm 3arm 3arm 3arm | 32 32 32 32 32 32 32 | nd nd nd nd nd nd nd | 0.42 0.37 0.42 0.32 0.43 0.32 0.30 | 4 4 4 2 4 2 2 | 15 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------------GGGGUGG------------- | 4 | novel | |
| seed | ------------------------------------------------------------------CAAUUGG------------------------------------- | 3 | novel | |
| seed | ------------------------UUCAACC------------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------AAAAUUU------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------------------------------GAUGAUG---------------------- | 1 | novel | |
| seed | --------------------------------------------------AGAAUUG----------------------------------------------------- | 1 | novel | |
| seed | -----------AAAGCUC-------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------AUUAGAA-------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------CAGACUC------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTC- | 20 | - | 3 | |
| -----------------------------------------------------------------TCAATTGGAGAAGCAAGATGA------------------------ | 21 | - | 2 | |
| -----------------------TTTCAACCAGTTTCACGAT-------------------------------------------------------------------- | 19 | - | 2 | |
| ------------------TAAAATTTCAACCAGTTTCA------------------------------------------------------------------------ | 20 | 1 | - | |
| -------------------------------------------------TAGAATTGTCTCAGACTCA------------------------------------------ | 19 | - | 1 | |
| -----------------------------------------------------------------TCAATTGGAGAAGCAAGA--------------------------- | 18 | - | 1 | |
| ----------TAAAGCTCTAAAATTTCAACCAGTTT-------------------------------------------------------------------------- | 26 | - | 1 | |
| -----------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTCA | 21 | - | 1 | |
| -----------------------------------------------------------TCAGACTCAATTGGAGAAG-------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------------------------------AGATGATGTTGGGGTGGAT----------- | 19 | - | 1 | |
| ----------------------------------------------TATTAGAATTGTCTCAGACTC------------------------------------------- | 21 | - | 1 | |
| rat | gatgtatttgTAAAGCTCTAAAATTTCAACCAGTTTCACGATaagtTATTAGAATTGTCTCAGACTCAATTGGAGAAGCAAGATGATGTTGGGGTGGATGAAAAACTTCA | |||
| ************************************************************************************************************** | ||||
| rat | ((.((.(((((...(((((((....(((....(((((.((((.((((...(((....)))..))))..))))..)))))....)))..)))))))..)))))..)).)). | 0.960 -19.00 | ||
| rat | chromosome:1:50787653:50787762:-1 | intergenic |
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