other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap (11 loci)
sblock6498 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.857 | no | no | 0.38/0.68 | 19/25/0.50 | 0.0 2.2 0.0 | 0.0 1.3 0.0 | 2 6 2 | 0 0 0 | 2 3 1 | 0 0 0 | 5 12 1 | 8 -10 4 | 5arm 5arm_loop_3arm 3arm | 51 54 110 | nd nd nd | 0.47 0.48 0.29 | 8 5 3 | 10 | 5 | 0 | 9 |
| reads | miRBase family seed | ||||||
| seed | -----------------UGACAUG--------------------------------------- | 3 | novel | ||||
| seed | ------------------------------------------CAAGUAU-------------- | 2 | novel | ||||
| seed | ------CGUUGUG-------------------------------------------------- | 2 | novel | ||||
| seed | ------------------------CCGCCUG-------------------------------- | 1 | novel | ||||
| seed | -------------GAUCUGA------------------------------------------- | 1 | novel | ||||
| seed | ---------------UCUGACA----------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T2S2 | T4S1 | T5S1 | |||
| ----------------CTGACATGCCGCCTGGAGAAACC------------------------ | 23 | - | - | 2 | - | - | |
| -----CCGTTGTGGATCTGACATG--------------------------------------- | 19 | 1 | - | 1 | - | - | |
| -----------------------------------------CCAAGTATGATGACATCAAGA- | 21 | - | 2 | - | - | - | |
| --------------ATCTGACATGCCGCCTGGAGAAACC------------------------ | 25 | - | - | - | 1 | - | |
| ----------------CTGACATGCCGCCTGGAGAAACCTG---------------------- | 25 | - | - | 1 | - | - | |
| ------------GGATCTGACATGCCGCCTGGAGAA--------------------------- | 24 | - | - | 1 | - | - | |
| -----------------------GCCGCCTGGAGAAACCTGC--------------------- | 19 | - | - | - | - | 1 | |
| rat | tcttgCCGTTGTGGATCTGACATGCCGCCTGGAGAAACCTGCCAAGTATGATGACATCAAGAa | ||||||
| *************************************************************** | |||||||
| rat | (((((..(((((........(((((.((..((.....)).))...))))))))))..))))). | 0.490 -10.60 | |||||
| rat | chromosome:2:155700754:155700816:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap (11 loci)
block317930 [novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.107 | no | no | 0.52/0.58 | 18/23/0.45 | 1.0 3.5 | 2.1 4.5 | 7 4 | 0 0 | 5 3 | 0 0 | 31 22 | -17 -3 | 5arm_loop_3arm 3arm | 14 14 | nd nd | 0.43 0.21 | 5 2 | 11 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ------------------------------------UUCCAGC---------------------------------------------- | 4 | novel | |||||
| seed | ----------------------------------CCUUCCA------------------------------------------------ | 1 | novel | |||||
| seed | ------------------------------------------CAGAUGU---------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------CUUCCAG----------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------CACCUUC-------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------UGGAUCA---------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------GUGGAUC----------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------AUGUGGA------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| -----------------------------------CTTCCAGCAGATGTGGATCAG--------------------------------- | 21 | - | - | 1 | - | 2 | 1 | |
| --------------------------------------------GATGTGGATCAGCAAGCAGGAGT---------------------- | 23 | - | - | - | - | 1 | - | |
| ----------------------------------------------TGTGGATCAGCAAGCAGGA------------------------ | 19 | - | - | 1 | - | - | - | |
| ---------------------------------ACCTTCCAGCAGATGTGGA------------------------------------- | 19 | - | - | 1 | - | - | - | |
| -----------------------------------------GCAGATGTGGATCAGCAAG----------------------------- | 19 | - | - | 1 | - | - | - | |
| -------------------------------CCACCTTCCAGCAGATGT---------------------------------------- | 18 | 1 | - | - | - | - | - | |
| -----------------------------------------------GTGGATCAGCAAGCAGGAG----------------------- | 19 | - | - | - | 1 | - | - | |
| ----------------------------------CCTTCCAGCAGATGTGGA------------------------------------- | 18 | - | 1 | - | - | - | - | |
| rat | tggattggcggctccatcctggcctcactgtCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTatgatgagtcaggcccctccat | |||||||
| ***************************************************************************************** | ||||||||
| rat | ((((..((((((((..(((((..((..((((((((..((.....)).))))).)))..))))))).......)))))..)))..)))). | 0.970 -30.10 | ||||||
| rat | chromosome:13:76952939:76953027:1 | intergenic |
block988238 [novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.142 | no | no | 0.45/0.61 | 18/25/0.64 | 0.0 2.8 2.0 | 0.0 3.0 5.5 | 1 6 4 | 0 0 0 | 1 4 3 | 0 0 0 | 26 26 12 | -8 -20 8 | 5arm_loop_3arm 3arm 3arm | 22 22 22 | nd nd nd | 0.47 0.36 0.22 | 5 4 2 | 11 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------AUCAAGC---------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------UGACUGU--------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------CCAUUCC------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------GCGCAAU----------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------UCAAGCG--------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------CAUUCCC----------------------------- | 1 | novel | |||||
| seed | --------------------------------------------CGCAAUA---------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------CCACCAU--------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------CACCAUU-------------------------------- | 1 | novel | |||||
| seed | ---------------------------------UCCUCAU--------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------CATCAAGCGCAATACCACCA---------------------------------- | 20 | - | - | - | 2 | - | - | |
| ------------------------------------------------------CCATTCCCACCAAGCAGACCCAGAC------------ | 25 | - | - | - | 1 | - | - | |
| --------------------------------GTCCTCATCAAGCGCAATACCACCA---------------------------------- | 25 | - | - | - | 1 | - | - | |
| -------------------------------------------GCGCAATACCACCATTCCCACC-------------------------- | 22 | - | - | - | - | 1 | - | |
| -----------------------------------------------------ACCATTCCCACCAAGCAGAC------------------ | 20 | 1 | - | - | - | - | - | |
| --------------------------------------ATCAAGCGCAATACCACCATTC------------------------------- | 22 | - | - | - | - | - | 1 | |
| --------------------------------------------------ACCACCATTCCCACCAAG----------------------- | 18 | - | 1 | - | - | - | - | |
| --------------------------ATGACTGTCCTCATCAAGC---------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ------------------------------------------AGCGCAATACCACCATTCCCAC--------------------------- | 22 | - | - | 1 | - | - | - | |
| ---------------------------------------------------CCACCATTCCCACCAAGCAGACC----------------- | 23 | - | - | - | 1 | - | - | |
| rat | ttgggattgaaactgctggtggagtcATGACTGTCCTCATCAAGCGCAATACCACCATTCCCACCAAGCAGACCCAGACtttcaccaccta | |||||||
| ******************************************************************************************* | ||||||||
| rat | (((((.......(((((((((((((..((..(((.((.....)).)))....))..))))).)))).)))).))))).............. | 0.900 -19.90 | ||||||
| rat | chromosome:1:102297807:102297897:1 | intergenic |
block2706044 [novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.142 | no | no | 0.45/0.61 | 18/25/0.64 | 0.0 2.8 2.0 | 0.0 3.0 5.5 | 1 6 4 | 0 0 0 | 1 4 3 | 0 0 0 | 26 26 12 | -8 -20 8 | 5arm_loop_3arm 3arm 3arm | 22 22 22 | nd nd nd | 0.47 0.36 0.22 | 5 4 2 | 11 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------AUCAAGC---------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------UGACUGU--------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------CCAUUCC------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------GCGCAAU----------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------UCAAGCG--------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------CAUUCCC----------------------------- | 1 | novel | |||||
| seed | --------------------------------------------CGCAAUA---------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------CCACCAU--------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------CACCAUU-------------------------------- | 1 | novel | |||||
| seed | ---------------------------------UCCUCAU--------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------CATCAAGCGCAATACCACCA---------------------------------- | 20 | - | - | - | 2 | - | - | |
| ------------------------------------------------------CCATTCCCACCAAGCAGACCCAGAC------------ | 25 | - | - | - | 1 | - | - | |
| --------------------------------GTCCTCATCAAGCGCAATACCACCA---------------------------------- | 25 | - | - | - | 1 | - | - | |
| -------------------------------------------GCGCAATACCACCATTCCCACC-------------------------- | 22 | - | - | - | - | 1 | - | |
| -----------------------------------------------------ACCATTCCCACCAAGCAGAC------------------ | 20 | 1 | - | - | - | - | - | |
| --------------------------------------ATCAAGCGCAATACCACCATTC------------------------------- | 22 | - | - | - | - | - | 1 | |
| --------------------------------------------------ACCACCATTCCCACCAAG----------------------- | 18 | - | 1 | - | - | - | - | |
| --------------------------ATGACTGTCCTCATCAAGC---------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ------------------------------------------AGCGCAATACCACCATTCCCAC--------------------------- | 22 | - | - | 1 | - | - | - | |
| ---------------------------------------------------CCACCATTCCCACCAAGCAGACC----------------- | 23 | - | - | - | 1 | - | - | |
| rat | ttgggattgaaactgctggtggagtcATGACTGTCCTCATCAAGCGCAATACCACCATTCCCACCAAGCAGACCCAGACtttcaccaccta | |||||||
| ******************************************************************************************* | ||||||||
| rat | (((((.......(((((((((((((..((..(((.((.....)).)))....))..))))).)))).)))).))))).............. | 0.900 -19.90 | ||||||
| rat | chromosome:X:53304422:53304512:-1 | intergenic |
block143669 [novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.142 | no | no | 0.45/0.61 | 18/25/0.64 | 0.0 2.8 2.0 | 0.0 3.0 5.5 | 1 6 4 | 0 0 0 | 1 4 3 | 0 0 0 | 26 26 12 | -8 -20 8 | 5arm_loop_3arm 3arm 3arm | 22 22 22 | nd nd nd | 0.47 0.36 0.22 | 5 4 2 | 11 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------AUCAAGC---------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------UGACUGU--------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------CCAUUCC------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------GCGCAAU----------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------UCAAGCG--------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------CAUUCCC----------------------------- | 1 | novel | |||||
| seed | --------------------------------------------CGCAAUA---------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------CCACCAU--------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------CACCAUU-------------------------------- | 1 | novel | |||||
| seed | ---------------------------------UCCUCAU--------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------CATCAAGCGCAATACCACCA---------------------------------- | 20 | - | - | - | 2 | - | - | |
| ------------------------------------------------------CCATTCCCACCAAGCAGACCCAGAC------------ | 25 | - | - | - | 1 | - | - | |
| --------------------------------GTCCTCATCAAGCGCAATACCACCA---------------------------------- | 25 | - | - | - | 1 | - | - | |
| -------------------------------------------GCGCAATACCACCATTCCCACC-------------------------- | 22 | - | - | - | - | 1 | - | |
| -----------------------------------------------------ACCATTCCCACCAAGCAGAC------------------ | 20 | 1 | - | - | - | - | - | |
| --------------------------------------ATCAAGCGCAATACCACCATTC------------------------------- | 22 | - | - | - | - | - | 1 | |
| --------------------------------------------------ACCACCATTCCCACCAAG----------------------- | 18 | - | 1 | - | - | - | - | |
| --------------------------ATGACTGTCCTCATCAAGC---------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ------------------------------------------AGCGCAATACCACCATTCCCAC--------------------------- | 22 | - | - | 1 | - | - | - | |
| ---------------------------------------------------CCACCATTCCCACCAAGCAGACC----------------- | 23 | - | - | - | 1 | - | - | |
| rat | ttgggattgaaactgctggtggagtcATGACTGTCCTCATCAAGCGCAATACCACCATTCCCACCAAGCAGACCCAGACtttcaccaccta | |||||||
| ******************************************************************************************* | ||||||||
| rat | (((((.......(((((((((((((..((..(((.((.....)).)))....))..))))).)))).)))).))))).............. | 0.900 -19.90 | ||||||
| rat | chromosome:11:5435738:5435828:1 | intergenic |
block730620 [novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.142 | no | no | 0.45/0.61 | 18/25/0.64 | 0.0 2.8 2.0 | 0.0 3.0 5.5 | 1 6 4 | 0 0 0 | 1 4 3 | 0 0 0 | 26 26 12 | -8 -20 8 | 5arm_loop_3arm 3arm 3arm | 22 22 22 | nd nd nd | 0.47 0.36 0.22 | 5 4 2 | 11 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------AUCAAGC---------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------UGACUGU--------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------CCAUUCC------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------GCGCAAU----------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------UCAAGCG--------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------CAUUCCC----------------------------- | 1 | novel | |||||
| seed | --------------------------------------------CGCAAUA---------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------CCACCAU--------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------CACCAUU-------------------------------- | 1 | novel | |||||
| seed | ---------------------------------UCCUCAU--------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------CATCAAGCGCAATACCACCA---------------------------------- | 20 | - | - | - | 2 | - | - | |
| ------------------------------------------------------CCATTCCCACCAAGCAGACCCAGAC------------ | 25 | - | - | - | 1 | - | - | |
| --------------------------------GTCCTCATCAAGCGCAATACCACCA---------------------------------- | 25 | - | - | - | 1 | - | - | |
| -------------------------------------------GCGCAATACCACCATTCCCACC-------------------------- | 22 | - | - | - | - | 1 | - | |
| -----------------------------------------------------ACCATTCCCACCAAGCAGAC------------------ | 20 | 1 | - | - | - | - | - | |
| --------------------------------------ATCAAGCGCAATACCACCATTC------------------------------- | 22 | - | - | - | - | - | 1 | |
| --------------------------------------------------ACCACCATTCCCACCAAG----------------------- | 18 | - | 1 | - | - | - | - | |
| --------------------------ATGACTGTCCTCATCAAGC---------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ------------------------------------------AGCGCAATACCACCATTCCCAC--------------------------- | 22 | - | - | 1 | - | - | - | |
| ---------------------------------------------------CCACCATTCCCACCAAGCAGACC----------------- | 23 | - | - | - | 1 | - | - | |
| rat | ttgggattgaaactgctggtggagtcATGACTGTCCTCATCAAGCGCAATACCACCATTCCCACCAAGCAGACCCAGACtttcaccaccta | |||||||
| ******************************************************************************************* | ||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041961 ENSRNOG00000027230 Q5D003_RAT | |||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000036240 ENSRNOG00000027230 Q5D003_RAT | |||||||
| rat | (((((.......(((((((((((((..((..(((.((.....)).)))....))..))))).)))).)))).))))).............. | 0.900 -19.90 | ||||||
| rat | chromosome:18:16734352:16734442:1 | Same_strand|Intronic_coding|ENSRNOT00000036240|ENSRNOG00000027230 ## ENSRNOG00000027230|protein_coding|Q5D003_RAT|Putative uncharacterized protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q5D003] |
block1305815 [novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.142 | no | no | 0.45/0.61 | 18/25/0.64 | 0.0 2.8 2.0 | 0.0 3.0 5.5 | 1 6 4 | 0 0 0 | 1 4 3 | 0 0 0 | 26 26 12 | -8 -20 8 | 5arm_loop_3arm 3arm 3arm | 22 22 22 | nd nd nd | 0.47 0.36 0.22 | 5 4 2 | 11 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------AUCAAGC---------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------UGACUGU--------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------CCAUUCC------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------GCGCAAU----------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------UCAAGCG--------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------CAUUCCC----------------------------- | 1 | novel | |||||
| seed | --------------------------------------------CGCAAUA---------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------CCACCAU--------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------CACCAUU-------------------------------- | 1 | novel | |||||
| seed | ---------------------------------UCCUCAU--------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------CATCAAGCGCAATACCACCA---------------------------------- | 20 | - | - | - | 2 | - | - | |
| ------------------------------------------------------CCATTCCCACCAAGCAGACCCAGAC------------ | 25 | - | - | - | 1 | - | - | |
| --------------------------------GTCCTCATCAAGCGCAATACCACCA---------------------------------- | 25 | - | - | - | 1 | - | - | |
| -------------------------------------------GCGCAATACCACCATTCCCACC-------------------------- | 22 | - | - | - | - | 1 | - | |
| -----------------------------------------------------ACCATTCCCACCAAGCAGAC------------------ | 20 | 1 | - | - | - | - | - | |
| --------------------------------------ATCAAGCGCAATACCACCATTC------------------------------- | 22 | - | - | - | - | - | 1 | |
| --------------------------------------------------ACCACCATTCCCACCAAG----------------------- | 18 | - | 1 | - | - | - | - | |
| --------------------------ATGACTGTCCTCATCAAGC---------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ------------------------------------------AGCGCAATACCACCATTCCCAC--------------------------- | 22 | - | - | 1 | - | - | - | |
| ---------------------------------------------------CCACCATTCCCACCAAGCAGACC----------------- | 23 | - | - | - | 1 | - | - | |
| rat | ttgggattgaaactgctggtggagtcATGACTGTCCTCATCAAGCGCAATACCACCATTCCCACCAAGCAGACCCAGACtttcaccaccta | |||||||
| ******************************************************************************************* | ||||||||
| rat | (((((.......(((((((((((((..((..(((.((.....)).)))....))..))))).)))).)))).))))).............. | 0.900 -19.90 | ||||||
| rat | chromosome:2:170310051:170310141:1 | intergenic |
block1799605 [novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.142 | no | no | 0.45/0.61 | 18/25/0.64 | 0.0 2.8 2.0 | 0.0 3.0 5.5 | 1 6 4 | 0 0 0 | 1 4 3 | 0 0 0 | 26 26 12 | -8 -20 8 | 5arm_loop_3arm 3arm 3arm | 22 22 22 | nd nd nd | 0.47 0.36 0.22 | 5 4 2 | 11 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------AUCAAGC---------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------UGACUGU--------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------CCAUUCC------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------GCGCAAU----------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------UCAAGCG--------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------CAUUCCC----------------------------- | 1 | novel | |||||
| seed | --------------------------------------------CGCAAUA---------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------CCACCAU--------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------CACCAUU-------------------------------- | 1 | novel | |||||
| seed | ---------------------------------UCCUCAU--------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T2S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------------------CATCAAGCGCAATACCACCA---------------------------------- | 20 | - | - | - | 2 | - | - | |
| ------------------------------------------------------CCATTCCCACCAAGCAGACCCAGAC------------ | 25 | - | - | - | 1 | - | - | |
| --------------------------------GTCCTCATCAAGCGCAATACCACCA---------------------------------- | 25 | - | - | - | 1 | - | - | |
| -------------------------------------------GCGCAATACCACCATTCCCACC-------------------------- | 22 | - | - | - | - | 1 | - | |
| -----------------------------------------------------ACCATTCCCACCAAGCAGAC------------------ | 20 | 1 | - | - | - | - | - | |
| --------------------------------------ATCAAGCGCAATACCACCATTC------------------------------- | 22 | - | - | - | - | - | 1 | |
| --------------------------------------------------ACCACCATTCCCACCAAG----------------------- | 18 | - | 1 | - | - | - | - | |
| --------------------------ATGACTGTCCTCATCAAGC---------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ------------------------------------------AGCGCAATACCACCATTCCCAC--------------------------- | 22 | - | - | 1 | - | - | - | |
| ---------------------------------------------------CCACCATTCCCACCAAGCAGACC----------------- | 23 | - | - | - | 1 | - | - | |
| rat | ttgggattgaaactgctggtggagtcATGACTGTCCTCATCAAGCGCAATACCACCATTCCCACCAAGCAGACCCAGACtttcaccaccta | |||||||
| ******************************************************************************************* | ||||||||
| rat | (((((.......(((((((((((((..((..(((.((.....)).)))....))..))))).)))).)))).))))).............. | 0.900 -19.90 | ||||||
| rat | chromosome:5:162477408:162477498:-1 | intergenic |
sblock1419 [novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.714 | no | no | 0.25/0.47 | 18/21/0.57 | 0.0 0.0 1.5 0.0 0.0 0.0 0.0 | 0.0 0.0 0.5 0.0 1.0 0.0 0.2 | 1 2 2 1 3 1 4 | 0 0 0 0 0 0 0 | 1 1 1 1 1 1 1 | 0 0 0 0 0 0 0 | 19 24 47 32 24 11 0 | 15 11 -15 2 8 23 32 | 5arm 5arm 5arm_loop_3arm 3arm 3arm 3arm 3arm | 32 32 32 32 32 32 32 | nd nd nd nd nd nd nd | 0.45 0.37 0.42 0.32 0.43 0.32 0.30 | 4 4 4 2 4 2 2 | 14 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------------------GGGGUGG------------- | 4 | novel | |
| seed | -------------------------------------------------------------------CAAUUGG------------------------------------- | 3 | novel | |
| seed | -------------------------UUCAACC------------------------------------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------------------------------GAUGAUG---------------------- | 1 | novel | |
| seed | ---------------------------------------------------AGAAUUG----------------------------------------------------- | 1 | novel | |
| seed | --------------------AAAAUUU------------------------------------------------------------------------------------ | 1 | novel | |
| seed | -------------------------------------------------------------CAGACUC------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------AUUAGAA-------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTC- | 20 | - | 3 | |
| ------------------------TTTCAACCAGTTTCACGAT-------------------------------------------------------------------- | 19 | - | 2 | |
| ------------------------------------------------------------------TCAATTGGAGAAGCAAGATGA------------------------ | 21 | - | 2 | |
| ------------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTCA | 21 | - | 1 | |
| -----------------------------------------------TATTAGAATTGTCTCAGACTC------------------------------------------- | 21 | - | 1 | |
| ---------------------------------------------------------------------------------AGATGATGTTGGGGTGGAT----------- | 19 | - | 1 | |
| ------------------------------------------------------------------TCAATTGGAGAAGCAAGA--------------------------- | 18 | - | 1 | |
| -------------------TAAAATTTCAACCAGTTTCA------------------------------------------------------------------------ | 20 | 1 | - | |
| --------------------------------------------------TAGAATTGTCTCAGACTCA------------------------------------------ | 19 | - | 1 | |
| ------------------------------------------------------------TCAGACTCAATTGGAGAAG-------------------------------- | 19 | - | 1 | |
| rat | agatgtatttgtaaagcttTAAAATTTCAACCAGTTTCACGATaagtTATTAGAATTGTCTCAGACTCAATTGGAGAAGCAAGATGATGTTGGGGTGGATGAAAAACTTCA | |||
| *************************************************************************************************************** | ||||
| rat | .((.((.(((((...(((((((....(((....(((((.((((.((((...(((....)))..))))..))))..)))))....)))..)))))))..)))))..)).)). | 0.900 -16.60 | ||
| rat | chromosome:1:51065130:51065240:1 | intergenic |
sblock1517 [novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.714 | no | no | 0.25/0.47 | 18/21/0.57 | 0.0 0.0 1.5 0.0 0.0 0.0 0.0 | 0.0 0.0 0.5 0.0 1.0 0.0 0.2 | 1 2 2 1 3 1 4 | 0 0 0 0 0 0 0 | 1 1 1 1 1 1 1 | 0 0 0 0 0 0 0 | 19 24 47 32 24 11 0 | 15 11 -15 2 8 23 32 | 5arm 5arm 5arm_loop_3arm 3arm 3arm 3arm 3arm | 32 32 32 32 32 32 32 | nd nd nd nd nd nd nd | 0.45 0.37 0.42 0.32 0.43 0.32 0.30 | 4 4 4 2 4 2 2 | 14 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------------------GGGGUGG------------- | 4 | novel | |
| seed | -------------------------------------------------------------------CAAUUGG------------------------------------- | 3 | novel | |
| seed | -------------------------UUCAACC------------------------------------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------------------------------GAUGAUG---------------------- | 1 | novel | |
| seed | ---------------------------------------------------AGAAUUG----------------------------------------------------- | 1 | novel | |
| seed | --------------------AAAAUUU------------------------------------------------------------------------------------ | 1 | novel | |
| seed | -------------------------------------------------------------CAGACUC------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------AUUAGAA-------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTC- | 20 | - | 3 | |
| ------------------------TTTCAACCAGTTTCACGAT-------------------------------------------------------------------- | 19 | - | 2 | |
| ------------------------------------------------------------------TCAATTGGAGAAGCAAGATGA------------------------ | 21 | - | 2 | |
| ------------------------------------------------------------------------------------------TGGGGTGGATGAAAAACTTCA | 21 | - | 1 | |
| -----------------------------------------------TATTAGAATTGTCTCAGACTC------------------------------------------- | 21 | - | 1 | |
| ---------------------------------------------------------------------------------AGATGATGTTGGGGTGGAT----------- | 19 | - | 1 | |
| ------------------------------------------------------------------TCAATTGGAGAAGCAAGA--------------------------- | 18 | - | 1 | |
| -------------------TAAAATTTCAACCAGTTTCA------------------------------------------------------------------------ | 20 | 1 | - | |
| --------------------------------------------------TAGAATTGTCTCAGACTCA------------------------------------------ | 19 | - | 1 | |
| ------------------------------------------------------------TCAGACTCAATTGGAGAAG-------------------------------- | 19 | - | 1 | |
| rat | agatgtatttgtaaagcttTAAAATTTCAACCAGTTTCACGATaagtTATTAGAATTGTCTCAGACTCAATTGGAGAAGCAAGATGATGTTGGGGTGGATGAAAAACTTCA | |||
| *************************************************************************************************************** | ||||
| ------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040973 ENSRNOG00000033340 RGD1561446_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046337 ENSRNOG00000033340 RGD1561446_predicted | |||
| rat | .((.((.(((((...(((((((....(((....(((((.((((.((((...(((....)))..))))..))))..)))))....)))..)))))))..)))))..)).)). | 0.900 -16.60 | ||
| rat | chromosome:1:51653278:51653388:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Same_strand|Boundary_non-coding|ENSRNOT00000048434|ENSRNOG00000033340 ## Same_strand|Intronic_non-coding|ENSRNOT00000046337|ENSRNOG00000033340 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## ENSRNOG00000033340|protein_coding|RGD1561446_predicted| |
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