other hairpins
novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap (11 loci)
sblock4572 [novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.330 | no | no | 0.21/0.53 | 19/25/0.40 | 0.0 0.0 0.0 1.5 0.3 | 0.0 0.0 0.0 3.0 1.7 | 3 1 1 2 3 | 0 0 0 0 0 | 1 1 1 2 2 | 0 0 0 0 0 | 0 12 40 22 6 | 45 35 7 -3 13 | 5arm 5arm 5arm 3arm 3arm | 7 7 14 14 14 | nd nd nd nd nd | 0.76 0.32 0.37 0.32 0.16 | 12 4 3 3 2 | 10 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -AAGUUCU--------------------------------------------------------------------------------------------------------- | 3 | miR-148b | |||||
| seed | ------------------------------------------------------------------------------------GCAUAGA---------------------- | 2 | novel | |||||
| seed | -----------------------------------------UUUUUGC----------------------------------------------------------------- | 1 | miR-129 | |||||
| seed | ----------------------------------------------------------------------UCCAAGU------------------------------------ | 1 | novel | |||||
| seed | -------------GUGGCUG--------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------CACUCCA--------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------------------------------------GGCAUAG----------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S2 | T3S1 | T4S1 | T5S1 | T5S2 | |||
| AAAGTTCTACAATGTGGCTGA-------------------------------------------------------------------------------------------- | 21 | - | - | - | 3 | - | - | |
| -----------------------------------------------------------------------------------GGCATAGATGGTTACAGGA----------- | 19 | - | - | 2 | - | - | - | |
| ----------------------------------------TTTTTTGCTTTTGGTTTTT------------------------------------------------------ | 19 | 1 | - | - | - | - | - | |
| ------------TGTGGCTGAGGACTTTGAT---------------------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------CTCCAAGTATCCACGGCATAGA---------------------- | 22 | - | - | 1 | - | - | - | |
| ----------------------------------------------------------------------------------CGGCATAGATGGTTACAGGAAGTCC------ | 25 | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------TCACTCCAAGTATCCACGG---------------------------- | 19 | - | 1 | - | - | - | - | |
| rat | AAAGTTCTACAATGTGGCTGAGGACTTTGATtgtacattgTTTTTTGCTTTTGGTTTTTtaaagagTCACTCCAAGTATCCACGGCATAGATGGTTACAGGAAGTCCcccacc | |||||||
| ***************************************************************************************************************** | ||||||||
| rat | .............((((....(((((((..(((((.((..(((..((((..(((...(((...(((...))).)))...))).)))).)))..)))))))))))))).)))). | 0.940 -24.80 | ||||||
| rat | chromosome:15:9952776:9952888:1 | intergenic ## {Repeats: dust 9952817 9952835 0 class=dust} |
sblock7564 [novel_lenNOK_cloningOK_multiarm_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.831 | no | no | 0.38/0.68 | 18/25/0.65 | 0.0 0.0 0.0 2.2 0.0 | 0.0 0.0 0.0 1.3 0.0 | 1 1 4 6 2 | 0 0 0 0 0 | 1 1 3 3 1 | 0 0 0 0 0 | 0 10 36 34 14 | 22 18 -10 -22 17 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 38 41 49 54 110 | nd nd nd nd nd | 0.17 0.28 0.60 0.32 0.43 | 1 3 10 3 3 | 17 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------CCGUUGU---------------------------------------------------------------- | 4 | novel | |||||
| seed | -------------------------------------------------UGACAUG---------------------------------------------------- | 3 | novel | |||||
| seed | --------------------------------------CGUUGUG--------------------------------------------------------------- | 2 | novel | |||||
| seed | --------------------------------------------------------------------------CAAGUAU--------------------------- | 2 | novel | |||||
| seed | --------------------------------------------------------CCGCCUG--------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------UCUGACA------------------------------------------------------ | 1 | novel | |||||
| seed | ------------------------------------UCCGUUG----------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------GAUCUGA-------------------------------------------------------- | 1 | novel | |||||
| seed | -----------CUUCCGU------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | -CUGGCAU---------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T4S1 | T5S1 | |||
| ------------------------------------TCCGTTGTGGATCTGACATG---------------------------------------------------- | 20 | - | - | - | 4 | - | - | |
| -------------------------------------------------------------------------CCAAGTATGATGACATCAAGA-------------- | 21 | - | 2 | - | - | - | - | |
| ------------------------------------------------CTGACATGCCGCCTGGAGAAACC------------------------------------- | 23 | - | - | 2 | - | - | - | |
| -------------------------------------CCGTTGTGGATCTGACATG---------------------------------------------------- | 19 | 1 | - | 1 | - | - | - | |
| ----------------------------------------------ATCTGACATGCCGCCTGGAGAAACC------------------------------------- | 25 | - | - | - | - | 1 | - | |
| -----------------------------------ATCCGTTGTGGATCTGACATGCC-------------------------------------------------- | 23 | - | - | - | 1 | - | - | |
| ------------------------------------------------CTGACATGCCGCCTGGAGAAACCTG----------------------------------- | 25 | - | - | 1 | - | - | - | |
| --------------------------------------------GGATCTGACATGCCGCCTGGAGAA---------------------------------------- | 24 | - | - | 1 | - | - | - | |
| ACTGGCATGGCCTTCCGTGTTCCT------------------------------------------------------------------------------------ | 24 | - | - | - | - | 1 | - | |
| ----------CCTTCCGTGTTCCTACCC-------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| -------------------------------------------------------GCCGCCTGGAGAAACCTGC---------------------------------- | 19 | - | - | - | - | - | 1 | |
| rat | actggcatggccttccgtgttcctacccccagtgtaTCCGTTGTGGATCTGACATGCCGCCTGGAGAAACCtgCCAAGTATGATGACATCAAGAaggtggtgaagcag | |||||||
| ************************************************************************************************************ | ||||||||
| rat | .(((.(((.((((((.((((((.(((...(((.((.((((..((((..........)))).))))...)))))....))).))..))))...)))))).)))...))) | 0.550 -27.80 | ||||||
| rat | chromosome:3:97329408:97329515:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_loopOverlap_bulgeHIGH (11 loci)
sblock11648 [novel_lenNOK_cloningOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.402 | no | no | 0.40/0.54 | 19/26/0.36 | 0.0 0.4 0.8 | 0.0 0.0 1.6 | 1 5 5 | 0 0 0 | 1 1 1 | 0 0 0 | 11 38 11 | 26 -2 16 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.37 0.32 0.24 | 3 5 4 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------GCAGAAA------------------------------------------------- | 3 | novel | |
| seed | ---------------------------------------------------------------------------------GCCAAAC----------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------UGCAGAA-------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------------------------------CCAAACA---------------------------- | 1 | novel | |
| seed | ------------GGAGCAU-------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------UAUGCCA-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ------------------------------------------------------------TGCAGAAACTCTGATGACT-------------------------------------- | 19 | - | 3 | |
| --------------------------------------------------------------------------------TGCCAAACACCTGAGCTGTGAAGTC------------ | 25 | - | 2 | |
| -----------------------------------------------------------TTGCAGAAACTCTGATGACT-------------------------------------- | 20 | - | 2 | |
| --------------------------------------------------------------------------------TGCCAAACACCTGAGCTGTGAAGTCA----------- | 26 | - | 1 | |
| -----------TGGAGCATAAAGGGGTGTG--------------------------------------------------------------------------------------- | 19 | 1 | - | |
| ---------------------------------------------------------------------------------GCCAAACACCTGAGCTGTGAAGTC------------ | 24 | - | 1 | |
| -----------------------------------------------------------------------------CTATGCCAAACACCTGAGCTG------------------- | 21 | - | 1 | |
| rat | ctggaggaggaTGGAGCATAAAGGGGTGTGtgtgtgtgtgtgtgttgtgggggggtgggTTGCAGAAACTCTGATGACTATGCCAAACACCTGAGCTGTGAAGTCAtcagcattggg | |||
| ********************************************************************************************************************* | ||||
| rat | ((.((....(((((..((((...((((((.....((.(((((.(((((.((((.((.....)).....)))).)))))))))))).))))))....))))...)))))....)).)) | 0.960 -29.40 | ||
| rat | chromosome:8:57724901:57725017:-1 | intergenic ## {Repeats: (CA)n 17 21 -1 class=Simple_repeat,trf 20 24 0 class=trf,dust 57724988 57724992 0 class=dust,(CA)n 2 21 -1 class=Simple_repeat} |
block193700 [novel_lenNOK_cloningOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.137 | no | no | 0.56/0.67 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 15 | 0 0 | 1 5 | 0 0 | 31 35 | -2 -6 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.39 0.22 | 4 4 | 19 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------CCCCGGC---------------------------------------------------------------- | 18 | novel | ||||
| seed | --------------------------------UAUUCCC-------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T5S1 | |||
| -----------------------------------TCCCCGGCATCTCCCAAG------------------------------------------------------ | 18 | 3 | 5 | - | 1 | 7 | |
| -----------------------------------TCCCCGGCATCTCCCAAGA----------------------------------------------------- | 19 | 1 | - | 1 | - | - | |
| -------------------------------TTATTCCCCGGCATCTCC---------------------------------------------------------- | 18 | - | - | 1 | - | - | |
| rat | cttcatggtgtgcctggtgcattttcctttcttatTCCCCGGCATCTCCCAAGatcgtgtgcagccggggtgcaggcaggagtaatgattgggaccctcaactgagg | ||||||
| *********************************************************************************************************** | |||||||
| rat | (((((.((.((.((..((.(((((((((.(((....(((((((((((....))))........)))))))...))).))))).))))))..)))))).....))))) | 0.880 -36.80 | |||||
| rat | chromosome:12:27204100:27204206:-1 | intergenic |
block879127 [novel_lenNOK_cloningOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.035 | no | no | 0.37/0.43 | 19/23/0.05 | 0.0 0.6 | 0.0 0.6 | 1 18 | 0 0 | 1 2 | 0 0 | 28 21 | -19 -2 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.30 0.26 | 6 4 | 20 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------ACAAACU-------------------------------- | 13 | novel | |
| seed | -------------------------------------UUACAAA---------------------------------- | 6 | novel | |
| seed | -----------------------------GUGCAAC------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------------------------TACAAACTACAGCTGCTAA--------------------- | 19 | - | 13 | |
| ------------------------------------CTTACAAACTACAGCTGCT----------------------- | 19 | 1 | 5 | |
| ----------------------------TGTGCAACCTTACAAACTACAGC--------------------------- | 23 | - | 1 | |
| rat | atgctctgctgggaaatgaagctgagtttgtgcaacCTTACAAACTACAGCTGCTAAtaactaagaaggctgatcata | |||
| ****************************************************************************** | ||||
| rat | (((.((.(((.((..((..(((((((((((((......)))))))).)))))....))..)).....))).)).))). | 0.940 -20.00 | ||
| rat | chromosome:1:124840191:124840268:-1 | intergenic |
block1060853 [novel_lenNOK_cloningOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.314 | no | no | 0.47/0.68 | 18/25/0.44 | 0.0 0.4 0.0 | 0.0 1.0 0.0 | 3 27 2 | 0 0 0 | 1 4 1 | 0 0 0 | 26 31 10 | -8 -16 4 | 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.32 0.30 0.32 | 4 4 3 | 41 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------------------------AGCUAGA--------------------------------------- | 26 | novel | |||
| seed | --------------------------------GUAGCUA----------------------------------------- | 9 | novel | |||
| seed | ---------------------------ACCCUGU---------------------------------------------- | 3 | miR-10a | |||
| seed | ----------------------------------------------GCGGCAG--------------------------- | 2 | novel | |||
| seed | --------------------------------------AGAGCUA----------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S1 | T5S1 | |||
| ---------------------------------TAGCTAGAGCTATGCGGCAG--------------------------- | 20 | 1 | 1 | 1 | 11 | |
| ---------------------------------TAGCTAGAGCTATGCGGCA---------------------------- | 19 | 5 | - | - | 6 | |
| -------------------------------TGTAGCTAGAGCTATGCGG------------------------------ | 19 | - | 1 | - | 5 | |
| --------------------------TACCCTGTAGCTAGAGCTA----------------------------------- | 19 | - | - | - | 3 | |
| ---------------------------------------------TGCGGCAGGCCAAGCCCTGAGTCAC---------- | 25 | - | - | - | 2 | |
| ---------------------------------TAGCTAGAGCTATGCGGCAGG-------------------------- | 21 | 1 | - | - | - | |
| -------------------------------------TAGAGCTATGCGGCAGGCCA----------------------- | 20 | - | - | - | 1 | |
| -------------------------------TGTAGCTAGAGCTATGCGGC----------------------------- | 20 | - | - | - | 1 | |
| -------------------------------TGTAGCTAGAGCTATGCG------------------------------- | 18 | - | - | - | 1 | |
| -------------------------------TGTAGCTAGAGCTATGCGGCAG--------------------------- | 22 | - | - | - | 1 | |
| rat | ttgagattctgtgctcactgagctcctacccTGTAGCTAGAGCTATGCGGCAGgccaagccctgagtcacgggctccggg | |||||
| ******************************************************************************** | ||||||
| rat | (((.((..(((((((((....((((((.((.((((((....)))))).)).)))...)))..)))).)))))..))))). | 0.950 -26.60 | ||||
| rat | chromosome:20:5519064:5519143:-1 | intergenic |
block1748229 [novel_lenNOK_cloningOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.437 | no | no | 0.37/0.45 | 19/26/0.24 | 0.0 0.4 | 0.0 0.0 | 10 5 | 0 0 | 2 1 | 0 0 | 46 26 | -18 1 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.26 0.30 | 4 5 | 21 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------GGGAAUU-------------------------------------------- | 13 | novel | |
| seed | ------------------------------------------------------GCAUGAG------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------GGAAUUG------------------------------------------- | 2 | novel | |
| seed | -----------------------------------------------------UGCAUGA-------------------------------------- | 2 | novel | |
| seed | -----------------------------------------GCCAAUG-------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------------------------------------TGGGAATTGCATGAGTTTA--------------------------------- | 19 | 2 | 10 | |
| -----------------------------------------------------TGCATGAGTTTATGCCAAG-------------------------- | 19 | - | 3 | |
| -----------------------------------------------GGGAATTGCATGAGTTTATG------------------------------- | 20 | - | 2 | |
| ----------------------------------------------------TTGCATGAGTTTATGCCAAG-------------------------- | 20 | - | 2 | |
| ----------------------------------------TGCCAATGGGAATTGCATGAGT------------------------------------ | 22 | - | 1 | |
| ----------------------------------------------TGGGAATTGCATGAGTTTATGCCAAG-------------------------- | 26 | - | 1 | |
| rat | gtttaaatgcagccaaggggagtgtgcacgcgtagctcagtgccaaTGGGAATTGCATGAGTTTATGCCAAGgaacaaactgtatctgtgagtggaca | |||
| ************************************************************************************************** | ||||
| rat | (((((..(((((....((....(((....((((((((((.((.((((....)))))))))))).))))......)))..))....)))))..))))). | 0.910 -23.80 | ||
| rat | chromosome:5:75288085:75288182:-1 | intergenic |
block1973359 [novel_lenNOK_cloningOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.592 | no | no | 0.32/0.45 | 18/20/0.13 | 0.0 1.0 0.0 | 0.0 0.0 0.0 | 1 3 9 | 0 0 0 | 1 1 2 | 0 0 0 | 26 31 39 | 7 2 -5 | 5arm 5arm 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.30 0.35 0.53 | 4 4 4 | 15 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------AUGCAGG-------------------------------------------------------- | 10 | novel | |
| seed | ---------------------------------UGGGUUU--------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------GGGUUUA-------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------UUGGGUU---------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------CCAGUUU--------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------GCAGGAU------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ---------------------------------------TATGCAGGATTATGATACA--------------------------------------------- | 19 | 1 | 9 | |
| -----------------------------------------TGCAGGATTATGATACATT------------------------------------------- | 19 | - | 1 | |
| -------------------------------TTTGGGTTTATGCAGGATTA---------------------------------------------------- | 20 | - | 1 | |
| ---------------------------------TGGGTTTATGCAGGATTA---------------------------------------------------- | 18 | - | 1 | |
| --------------------------TCCAGTTTGGGTTTATGCAG--------------------------------------------------------- | 20 | - | 1 | |
| --------------------------------TTGGGTTTATGCAGGATTA---------------------------------------------------- | 19 | - | 1 | |
| rat | attaggctccttaaaagagtgcttcctccagtttgggttTATGCAGGATTATGATACAtttgcctagaaaaactcagtctgatttctcctttgattgtgtaat | |||
| ******************************************************************************************************* | ||||
| rat | ((((.((...(((((.(((.........(((.((((((((....(((...(((...)))...)))....)))))))).)))....))).)))))..)).)))) | 0.650 -18.02 | ||
| rat | chromosome:6:122572423:122572525:-1 | intergenic |
block426032 [novel_lenNOK_cloningOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.034 | no | no | 0.40/0.45 | 20/25/0.55 | 0.0 0.0 | 2.1 0.0 | 7 1 | 0 0 | 3 1 | 0 0 | 28 13 | -21 3 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.30 0.36 | 4 4 | 11 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------AGGACAU-------------------------------------- | 10 | novel | ||
| seed | ----------------------------------------GAGAGUC--------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S2 | T5S1 | |||
| ----------------------------TAGGACATCTTTGAGAGTCTACAGT--------------------- | 25 | 1 | - | 4 | |
| ----------------------------TAGGACATCTTTGAGAGTCT-------------------------- | 20 | - | 1 | 3 | |
| ----------------------------TAGGACATCTTTGAGAGTCTAC------------------------ | 22 | - | 1 | - | |
| ---------------------------------------TGAGAGTCTACAGTATGCCTCT------------- | 22 | - | - | 1 | |
| rat | cagctatccaatacatacaggggcctcaTAGGACATCTTTGAGAGTCTACAGTatgcctctgggctaaggctgc | ||||
| ************************************************************************** | |||||
| rat | (((((.((((...(((((..((((((((.(((....))))))).))))...)))))....))))....))))). | 0.810 -22.20 | |||
| rat | chromosome:15:256918:256991:-1 | intergenic |
block713126 [novel_lenNOK_cloningOK_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.558 | no | no | 0.32/0.47 | 19/25/0.50 | 1.0 0.2 0.0 | 0.0 0.2 1.1 | 2 4 8 | 0 0 0 | 1 1 2 | 0 0 0 | 46 39 32 | -15 -10 -5 | 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.50 0.47 0.27 | 10 8 4 | 18 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------GCUUUUU---------------------------------------------- | 10 | novel | |
| seed | ---------------------------------------------------------UCUUGCU-------------------------------------------------- | 3 | novel | |
| seed | --------------------------------------------------------------------GAUCUGG--------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------CUUUUUG--------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------GAUAAAU---------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------GUCUUGC--------------------------------------------------- | 1 | miR-431 | |
| seed | -----------------------------------------------GGGAUAA------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| ------------------------------------------------------------TGCTTTTTGATCTGGCTTGTGT-------------------------------- | 22 | 1 | 5 | |
| ------------------------------------------------------------TGCTTTTTGATCTGGCTTG----------------------------------- | 19 | - | 3 | |
| --------------------------------------------------------GTCTTGCTTTTTGATCTGG--------------------------------------- | 19 | - | 3 | |
| -------------------------------------------------------TGTCTTGCTTTTTGATCTG---------------------------------------- | 19 | - | 1 | |
| -------------------------------------------------------------GCTTTTTGATCTGGCTTGTGTACCT---------------------------- | 25 | - | 1 | |
| -------------------------------------------------------------------TGATCTGGCTTGTGTACCT---------------------------- | 19 | - | 1 | |
| ------------------------------------------------------------TGCTTTTTGATCTGGCTTGT---------------------------------- | 20 | - | 1 | |
| ------------------------------------------------GGATAAATGTCTTGCTTTTTGA-------------------------------------------- | 22 | - | 1 | |
| ----------------------------------------------TGGGATAAATGTCTTGCTTTTTGA-------------------------------------------- | 24 | - | 1 | |
| rat | actgacacccacagtggtacctggcatgtagttgctcaatgatgcctgggataaatGTCTTGCTTTTTGATCTGGCTTGTGTacctaacaccaagtgaaacggtggcctcagtt | |||
| ****************************************************************************************************************** | ||||
| rat | (((((...((((.((..(((.(((....(((.(((.(((....(((.(((.((((..........)))).))))))))).))).)))...))).)))..)).))))..))))). | 0.920 -28.10 | ||
| rat | chromosome:18:63575239:63575352:-1 | intergenic |
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