other hairpins
novel_lenNOK_multiarm_DicerNOK_randfoldOK_bulgeHIGH (11 loci)
sblock5517 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.44/0.72 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 24 | 20 6 | 5arm 3arm | 1 1 | nd nd | 0.44 0.22 | 3 4 | 2 | 2 | -15 | -15 |
| reads | miRBase family seed | |||
| seed | -CCACAAG------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------GGGGCCU---------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S1 | |||
| ACCACAAGGATGGTTCTA-------------------------------------------------------------------------- | 18 | - | 1 | |
| --------------------------------------------------CGGGGCCTCAGATGGAGG------------------------ | 18 | 1 | - | |
| rat | ACCACAAGGATGGTTCTAgctccatctccctggcccacgctagagtgtacCGGGGCCTCAGATGGAGGaaccagcttgctcagaaaaagtgg | |||
| ******************************************************************************************** | ||||
| rat | ....((((..((((((...((((((((((((((..(((......)))..))))))....)))))))))))))).)))).............. | 0.770 -38.00 | ||
| rat | chromosome:18:62144319:62144410:-1 | intergenic |
sblock5882 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.33/0.39 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 31 23 | 2 18 | 5arm 3arm | 1 2 | nd nd | 0.28 0.56 | 4 6 | 2 | 2 | 17 | 17 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------UGUUUCU--------------------------------- | 1 | novel | |
| seed | --------------------------------UCAGUCA--------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -------------------------------------------------------------------------ATGTTTCTGTGACTCATT----------------------- | 18 | - | 1 | |
| -------------------------------TTCAGTCACTGAAAAAGG----------------------------------------------------------------- | 18 | 1 | - | |
| rat | gaggctctgtttctccctgcacaatcatgcaTTCAGTCACTGAAAAAGGatacaaatccatctgtggttctggATGTTTCTGTGACTCATTtgcagggtatccagcaatccttc | |||
| ****************************************************************************************************************** | ||||
| rat | ((((..(((.....(((((((...((((((((((((((((.((....((((....)))).)).))))..))))))))....))))......)))))))....)))....)))). | 0.960 -32.50 | ||
| rat | chromosome:19:38100657:38100770:1 | intergenic |
sblock592 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.50/0.61 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 8 1 | 0 0 | 4 1 | 0 0 | 37 39 | 2 0 | 5arm 3arm | 1 1 | nd nd | 0.44 0.28 | 5 4 | 9 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | --------------------------------------CUCCCAA------------------------------------------------------------------------- | 8 | miR-150 | |||
| seed | --------------------------------------------------------------GCCCUGC------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T3S2 | |||
| -------------------------------------TCTCCCAACCCTTGAAAG--------------------------------------------------------------- | 18 | 1 | 2 | 3 | 2 | |
| -------------------------------------------------------------AGCCCTGCAGGGGTTTTG--------------------------------------- | 18 | - | 1 | - | - | |
| rat | tcagctgaattctatgcagccaaaatacctctggacaTCTCCCAACCCTTGAAAGctccctAGCCCTGCAGGGGTTTTGttttggtttagtttggttttttgttttggtttttggttg | |||||
| ********************************************************************************************************************** | ||||||
| rat | .((((..((..(((.(((((((((..(((...(((((......((((((((...(((....)))....)))))))).))))).)))....))))))....)))..)))..))..)))) | 0.890 -34.20 | ||||
| rat | chromosome:1:97553085:97553202:-1 | intergenic ## {Repeats: A-rich 121 126 -1 class=Low_complexity,dust 97553124 97553128 0 class=dust,trf 120 124 0 class=trf,trf 126 130 0 class=trf,A-rich 2 126 -1 class=Low_complexity} |
sblock7905 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.58/0.78 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 1 | 0 0 | 6 13 | 12 2 | 5arm 3arm | 2 2 | nd nd | 0.37 0.28 | 4 4 | 4 | 2 | -5 | -5 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------CCUGCUC----------------------- | 3 | novel | |
| seed | -------GAGAGGA------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------------------------CCCTGCTCCCCCACACCC------------- | 18 | - | 3 | |
| ------TGAGAGGAGAAGGGGGAAG------------------------------------------------- | 19 | 1 | - | |
| rat | aggaggTGAGAGGAGAAGGGGGAAGcagtcactgggaaaactcCCCTGCTCCCCCACACCCggctattactttc | |||
| ************************************************************************** | ||||
| ------------------------------------------------------------------------------------ | ENSRNOT00000050355 ENSRNOG00000024457 Cyct | |||
| ------------------------------------------------------------------------------------ | ENSRNOT00000008301 ENSRNOG00000024457 Cyct | |||
| rat | .((((((((..((....(((((.(((((.....((((....))))))))))))))....)).....)))))))) | 1.000 -30.40 | ||
| rat | chromosome:3:58974906:58974979:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000008371|ENSRNOG00000024457 ## Opposite_strand|Intronic_coding|ENSRNOT00000008301|ENSRNOG00000024457 ## ENSRNOG00000024457|protein_coding|Cyct|Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A (EC 3.1.4.17) (EC 3.1.4.35) (cAMP and cGMP phosphodiesterase 11A). [Source:UniProtKB/Swiss-Prot;Acc:Q8VID6] |
sblock9776 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.58/0.62 | 19/24/0.33 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 8 26 21 | 24 11 11 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.29 0.42 0.26 | 3 4 4 | 3 | 2 | 5 | 5 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------CCUGCUA-------------------------------- | 1 | novel | |
| seed | ---------------------------GCACCUG------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------CAAGAGA------------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| --------GCAAGAGAAGCAGCAGGGTGCACC-------------------------------------------------------------------------------- | 24 | - | 1 | |
| --------------------------TGCACCTGCAGAGTCTGCT------------------------------------------------------------------- | 19 | 1 | - | |
| ------------------------------------------------------------------------ACCTGCTATCTGCACCCTG--------------------- | 19 | 1 | - | |
| rat | aaagacttGCAAGAGAAGCAGCAGGGTGCACCTGCAGAGTCTGCTtagggaaccgcagaccgcctcctcaggACCTGCTATCTGCACCCTGggcggtctcttcaaggtcttt | |||
| **************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000057987 ENSRNOG00000006966 Nfia | |||
| rat | ((((((((..((((((.((..(((((((((...((((.((((.....((((...((.....)).))))..))))))))....))))))))).))..))))))..)))))))) | 0.640 -50.70 | ||
| rat | chromosome:5:118132535:118132646:1 | Same_strand|Boundary_non-coding|ENSRNOT00000009505|ENSRNOG00000006966 ## Same_strand|Intronic_coding|ENSRNOT00000057987|ENSRNOG00000006966 ## ENSRNOG00000006966|protein_coding|Nfia|Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A) (NFI-A) (NF-I/A) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein). [Source:UniProtKB/Swiss-Prot;Acc:P09414] |
novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH (11 loci)
sblock10715 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.103 | no | no | 0.43/0.48 | 19/26/0.56 | 0.0 1.1 | 2.0 0.1 | 2 7 | 0 0 | 1 3 | 0 0 | 0 2 | 26 12 | 5arm 3arm | 10 10 | nd nd | 0.36 0.19 | 5 2 | 9 | 3 | -4 | -4 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------UUGGUUU---------------- | 4 | novel | ||
| seed | -AGUACUC---------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------------GGUUUUC-------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------UCUCUUG-------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------CTTGGTTTTCATATGACGGGG--- | 21 | - | 3 | 1 | |
| --------------------------------------------------------------------------TGGTTTTCATATGACGGGG--- | 19 | 1 | 1 | - | |
| TAGTACTCATCAGGTGACACATGAG----------------------------------------------------------------------- | 25 | - | 1 | - | |
| TAGTACTCATCAGGTGACACA--------------------------------------------------------------------------- | 21 | - | 1 | - | |
| --------------------------------------------------------------------TTCTCTTGGTTTTCATATGACGGGGG-- | 26 | - | 1 | - | |
| rat | TAGTACTCATCAGGTGACACATGAGccgatgcccagggacatccctctctggactacagaggctgtccTTCTCTTGGTTTTCATATGACGGGGGct | ||||
| ************************************************************************************************ | |||||
| rat | .((..(((.(((.((((.....(((((((.....(((((((....((((((.....)))))).)))))))...))))))))))).))).)))..)) | 0.960 -30.60 | |||
| rat | chromosome:7:18806296:18806391:-1 | intergenic |
sblock10868 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.105 | no | no | 0.37/0.56 | 18/25/0.43 | 2.5 0.0 0.0 0.0 | 2.8 0.0 0.0 0.0 | 4 1 1 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 0 17 21 1 | 7 -3 -6 18 | 5arm 5arm_loop 5arm_loop_3arm 3arm | 2 2 2 2 | nd nd nd nd | 0.25 0.42 0.44 0.50 | 2 4 4 5 | 7 | 2 | 0 | 12 |
| reads | miRBase family seed | |||
| seed | -GAAUCCU-------------------------------------------------------------------- | 2 | novel | |
| seed | ------------------UGAAGCA--------------------------------------------------- | 1 | novel | |
| seed | --------UGGAGUU------------------------------------------------------------- | 1 | novel | |
| seed | ----UCCUUGG----------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------GCAUAGC----------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------AGUUAAA------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| -----------------TTGAAGCATAGCTTGCAGA---------------------------------------- | 19 | - | 1 | |
| CGAATCCTTGGAGTTTCTTGA------------------------------------------------------- | 21 | 1 | - | |
| ---------------------AGCATAGCTTGCAGACGC------------------------------------- | 18 | - | 1 | |
| -------TTGGAGTTTCTTGAAGCAT-------------------------------------------------- | 19 | - | 1 | |
| ---ATCCTTGGAGTTTCTTGAAG----------------------------------------------------- | 20 | - | 1 | |
| CGAATCCTTGGAGTTTCTTGAAGCA--------------------------------------------------- | 25 | - | 1 | |
| -------------------------------------------------------TAGTTAAAGGGACTTTGAGG- | 20 | - | 1 | |
| rat | CGAATCCTTGGAGTTTCTTGAAGCATAGCTTGCAGACGCgccttgccttccagatTAGTTAAAGGGACTTTGAGGt | |||
| **************************************************************************** | ||||
| rat | .....(((..((((..(((((((((..((..((....))))..))).)))...........)))..))))..))). | 0.870 -21.80 | ||
| rat | chromosome:7:96032496:96032571:-1 | intergenic |
sblock11199 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.103 | no | no | 0.43/0.48 | 19/26/0.56 | 0.0 1.1 | 2.0 0.1 | 2 7 | 0 0 | 1 3 | 0 0 | 0 2 | 26 12 | 5arm 3arm | 10 10 | nd nd | 0.36 0.19 | 5 2 | 9 | 3 | -4 | -4 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------UUGGUUU---------------- | 4 | novel | ||
| seed | -AGUACUC---------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------------GGUUUUC-------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------UCUCUUG-------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------CTTGGTTTTCATATGACGGGG--- | 21 | - | 3 | 1 | |
| --------------------------------------------------------------------------TGGTTTTCATATGACGGGG--- | 19 | 1 | 1 | - | |
| TAGTACTCATCAGGTGACACATGAG----------------------------------------------------------------------- | 25 | - | 1 | - | |
| TAGTACTCATCAGGTGACACA--------------------------------------------------------------------------- | 21 | - | 1 | - | |
| --------------------------------------------------------------------TTCTCTTGGTTTTCATATGACGGGGG-- | 26 | - | 1 | - | |
| rat | TAGTACTCATCAGGTGACACATGAGccgatgcccagggacatccctctctggactacagaggctgtccTTCTCTTGGTTTTCATATGACGGGGGct | ||||
| ************************************************************************************************ | |||||
| rat | .((..(((.(((.((((.....(((((((.....(((((((....((((((.....)))))).)))))))...))))))))))).))).)))..)) | 0.960 -30.60 | |||
| rat | chromosome:7:18365332:18365427:1 | intergenic |
sblock11226 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.057 | no | no | 0.43/0.48 | 19/26/0.56 | 0.0 1.1 | 2.0 0.1 | 2 7 | 0 0 | 1 3 | 0 0 | 0 2 | 26 12 | 5arm 3arm | 10 10 | nd nd | 0.36 0.19 | 5 2 | 9 | 3 | -4 | -4 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------UUGGUUU---------------- | 4 | novel | ||
| seed | -AGUACUC---------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------------GGUUUUC-------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------UCUCUUG-------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------CTTGGTTTTCATATGACGGGG--- | 21 | - | 3 | 1 | |
| --------------------------------------------------------------------------TGGTTTTCATATGACGGGG--- | 19 | 1 | 1 | - | |
| TAGTACTCATCAGGTGACACATGAG----------------------------------------------------------------------- | 25 | - | 1 | - | |
| TAGTACTCATCAGGTGACACA--------------------------------------------------------------------------- | 21 | - | 1 | - | |
| --------------------------------------------------------------------TTCTCTTGGTTTTCATATGACGGGGG-- | 26 | - | 1 | - | |
| rat | TAGTACTCATCAGGTGACACATGAGccgatgcccaaggacatccctctctggactacagaggctgtccTTCTCTTGGTTTTCATATGACGGGGGct | ||||
| ************************************************************************************************ | |||||
| rat | .((..(((.(((.((((.....(((((((.....(((((((....((((((.....)))))).)))))))...))))))))))).))).)))..)) | 1.000 -30.90 | |||
| rat | chromosome:7:18837061:18837156:1 | intergenic |
sblock1928 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.390 | no | no | 0.28/0.55 | 18/24/0.57 | 0.0 0.0 5.8 | 2.5 0.0 4.0 | 2 1 4 | 0 0 0 | 1 1 2 | 0 0 0 | 0 19 0 | 29 13 31 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.22 0.20 0.42 | 3 2 4 | 7 | 2 | 15 | 18 |
| reads | miRBase family seed | |||
| seed | -CCAAAGU-------------------------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------------------------------------------------------------------------------AUCACUA---------------- | 2 | miR-34c* | |
| seed | --------------------GUGCCAC------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------------------GUCAUUU----------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------------------------------CACUAGA-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| TCCAAAGTATTCAAGTAAATGTG----------------------------------------------------------------------------------------------- | 23 | 1 | - | |
| TCCAAAGTATTCAAGTAA---------------------------------------------------------------------------------------------------- | 18 | 1 | - | |
| ----------------------------------------------------------------------------------------------TATCACTAGAAGTTGTACTTGCCC | 24 | - | 1 | |
| ----------------------------------------------------------------------------------------------TATCACTAGAAGTTGTACT----- | 19 | 1 | - | |
| ---------------------------------------------------------------------------------------TGTCATTTATCACTAGAAGTTGT-------- | 23 | - | 1 | |
| -------------------TGTGCCACCTCCTTACCTCA------------------------------------------------------------------------------- | 20 | - | 1 | |
| ------------------------------------------------------------------------------------------------TCACTAGAAGTTGTACTTG--- | 19 | - | 1 | |
| rat | TCCAAAGTATTCAAGTAAATGTGCCACCTCCTTACCTCAatccaaagtctttgtgagaaggagaagcttgggggaggggtggatctcTGTCATTTATCACTAGAAGTTGTACTTGCCC | |||
| ********************************************************************************************************************** | ||||
| rat | ....((((((((.((((((((..(((((.((((.((((((.......(((((....)))))......)))))))))))))))........)))))...))).))....)))))).... | 0.520 -28.62 | ||
| rat | chromosome:1:128273241:128273358:1 | intergenic |
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