other hairpins
novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH (11 loci)
sblock3256 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.132 | no | no | 0.26/0.55 | 18/23/0.50 | 1.5 4.0 | 3.2 3.5 | 4 4 | 0 0 | 3 2 | 0 0 | 4 3 | 14 22 | 5arm 3arm | 1 1 | nd nd | 0.22 0.35 | 2 5 | 8 | 4 | 5 | 6 |
| reads | miRBase family seed | |||||
| seed | -----GAGUCUC---------------------------------------------------------------------------------------- | 3 | novel | |||
| seed | ---------------------------------------------------------------------------CUCUUCA------------------ | 2 | novel | |||
| seed | -----------CAUGUAG---------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------CUCUCUC---------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------------------UCAAUAG-------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------TCTCTTCAATAGGTTTTGTTTAG--- | 23 | - | - | 1 | - | |
| ----TGAGTCTCATGTAGGGAGCCAG-------------------------------------------------------------------------- | 22 | - | 1 | - | - | |
| ----TGAGTCTCATGTAGGGAG------------------------------------------------------------------------------ | 18 | - | - | 1 | - | |
| ----------------------------------------------------------------------TCTCTCTCTTCAATAGGTTTT--------- | 21 | 1 | - | - | - | |
| ----------TCATGTAGGGAGCCAGTGTG---------------------------------------------------------------------- | 20 | - | - | - | 1 | |
| ----TGAGTCTCATGTAGGGAGC----------------------------------------------------------------------------- | 19 | - | - | 1 | - | |
| --------------------------------------------------------------------------TCTCTTCAATAGGTTTTGT------- | 19 | - | - | 1 | - | |
| ------------------------------------------------------------------------------TTCAATAGGTTTTGTTTAG--- | 19 | - | - | 1 | - | |
| rat | ccgcTGAGTCTCATGTAGGGAGCCAGTGTGgtgaacctctcttctctggaagggatgctttctcgctctcTCTCTCTCTTCAATAGGTTTTGTTTAGtgg | |||||
| **************************************************************************************************** | ||||||
| rat | (((((((((((..((.((((((..((.((((.(((..(((((((....)))))))....)))))))...))..)))))).))..))).....)))))))) | 0.560 -28.00 | ||||
| rat | chromosome:12:27563654:27563753:-1 | intergenic ## {Repeats: dust 27563675 27563684 0 class=dust} |
sblock3383 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.109 | no | no | 0.22/0.59 | 18/25/0.50 | 0.0 2.1 | 0.0 2.7 | 1 7 | 0 0 | 1 3 | 0 0 | 14 4 | 15 5 | 5arm 3arm | 1 1 | nd nd | 0.28 0.21 | 4 3 | 8 | 4 | -5 | 0 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------------------CCUUCCU--------------------------- | 3 | novel | |||
| seed | ----------------------------------------------------------------CCUCCUU------------------------------ | 2 | novel | |||
| seed | ----------------------------------------------------------------------UCCUUGC------------------------ | 1 | novel | |||
| seed | ---------------AAAUGUU------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------------UUGCGUC--------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| ------------------------------------------------------------------TCCTTCCTTGCGTCTAGGGACT------------- | 22 | - | - | - | 3 | |
| ---------------------------------------------------------------------TTCCTTGCGTCTAGGGACT------------- | 19 | - | - | - | 1 | |
| ---------------------------------------------------------------TCCTCCTTCCTTGCGTCTAGGG---------------- | 22 | 1 | - | - | - | |
| ---------------------------------------------------------------TCCTCCTTCCTTGCGTCT-------------------- | 18 | - | - | 1 | - | |
| ------------------------------------------------------------------------CTTGCGTCTAGGGACTTAGCACAGT---- | 25 | - | - | - | 1 | |
| --------------AAAATGTTTTTGAAAAGG--------------------------------------------------------------------- | 18 | - | 1 | - | - | |
| rat | attttacaatgttgAAAATGTTTTTGAAAAGGagacagcacaagggtgtaaaagaaaggccctTCCTCCTTCCTTGCGTCTAGGGACTTAGCACAGTagaa | |||||
| ***************************************************************************************************** | ||||||
| rat | .((((((..((((((....((((((((.((((((..((...((((((...........)))))).))..))))))...)).))))))))))))..)))))) | 0.810 -22.80 | ||||
| rat | chromosome:12:5604406:5604506:1 | intergenic |
sblock7479 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.504 | no | no | 0.52/0.68 | 18/25/0.25 | 0.0 0.0 0.0 0.0 5.5 | 0.0 0.0 0.0 0.0 4.5 | 1 1 1 1 4 | 0 0 0 0 0 | 1 1 1 1 2 | 0 0 0 0 0 | 35 40 39 28 1 | 1 -6 -3 8 21 | 5arm 5arm_loop 3arm_loop 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.26 0.57 0.28 0.17 0.22 | 2 7 2 1 1 | 8 | 4 | 0 | 2 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------CUGCAGG--------------------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------------------------------------UCGUCCC------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------------------------------UCCCAGA---------------- | 1 | novel | |||
| seed | -----------------------------------------GGACUGU---------------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------------------------------ACUCUGU------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------------------------------------CGUCCCA------------------ | 1 | novel | |||
| seed | -------------------------------------------------------------------------GGUUGCA-------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------GUGCUGU------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S1 | T3S2 | T5S2 | |||
| ----------------------------------------AGGACTGTGGAAAGCTGGTGT--------------------------------------------------------- | 21 | - | - | 1 | - | |
| -----------------------------------GCTGCAGGACTGTGGAAAG---------------------------------------------------------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------------------------------------------GTCCCAGAAGCCGGACTG------ | 18 | - | - | 1 | - | |
| -------------------------------------------------------------AGTGCTGTCGGAGGTTGC--------------------------------------- | 18 | - | - | 1 | - | |
| --------------------------------------------------------------------------------------------TCGTCCCAGAAGCCGGACTGCAGTG- | 25 | - | 1 | - | - | |
| -------------------------------------------------------------------------------------------GTCGTCCCAGAAGCCGGAC-------- | 19 | - | - | 1 | - | |
| -------------------------------------------------------------------------------------AACTCTGTCGTCCCAGAAGCCG----------- | 22 | - | 1 | - | - | |
| ------------------------------------------------------------------------AGGTTGCAGGCGTAACTC---------------------------- | 18 | 1 | - | - | - | |
| rat | gcaccggaaccggaaactcttgtgggcagggctgcGCTGCAGGACTGTGGAAAGCTGGTGTAGTGCTGTCGGAGGTTGCAGGCGTAACTCTGTCGTCCCAGAAGCCGGACTGCAGTGc | |||||
| ********************************************************************************************************************** | ||||||
| rat | (((((((..((((.....(((.(((((((((.((((((((((..((.(((..(((.........))).))).)).)))))).)))).)))))....)))).))))))).)))..)))) | 0.900 -43.70 | ||||
| rat | chromosome:3:18794426:18794543:-1 | intergenic |
sblock8159 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.247 | no | no | 0.47/0.84 | 18/22/0.14 | 2.8 0.0 0.0 | 3.2 0.0 0.0 | 5 1 1 | 0 0 0 | 3 1 1 | 0 0 0 | 0 22 30 | 29 15 5 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.26 0.42 0.32 | 3 7 3 | 7 | 5 | -15 | -15 |
| reads | miRBase family seed | ||||||
| seed | -GAUGAUG--------------------------------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -----------------------UGCGCGU----------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ---------CCGCCGG------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------------------UUCACGA----------------------------------------- | 1 | novel | ||||
| seed | -------GGCCGCC--------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | |||
| AGATGATGGCCGCCGGCGC---------------------------------------------------------------------------------------------- | 19 | - | - | 1 | 1 | - | |
| AGATGATGGCCGCCGGCGCGCA------------------------------------------------------------------------------------------- | 22 | - | - | - | 1 | - | |
| ----------------------------------------------------------------CTTCACGAGTGGGTAGAGA------------------------------ | 19 | - | 1 | - | - | - | |
| ------TGGCCGCCGGCGCGCATT----------------------------------------------------------------------------------------- | 18 | - | - | - | 1 | - | |
| --------GCCGCCGGCGCGCATTGCG-------------------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | |
| ----------------------TTGCGCGTTTTCTTCTCTC------------------------------------------------------------------------ | 19 | - | - | - | - | 1 | |
| rat | AGATGATGGCCGCCGGCGCGCATTGCGCGTTTTCTTCTCTCgcctgctgaggcgccagcggctgCTTCACGAGTGGGTAGAGAgttcctccgtgctgttcccggtgttgcggt | ||||||
| ***************************************************************************************************************** | |||||||
| rat | .....((.((((((((...(((..(((((.......((((((((..((((((((((...))).)))))...))..))).)))))......))))))))..))))))..)).)) | 0.930 -44.52 | |||||
| rat | chromosome:3:116813129:116813241:1 | intergenic ## {SimpF: 1 Eponine,oe = 0.88 1 CpG, -1 Eponine} |
sblock8212 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.349 | no | no | 0.37/0.43 | 19/22/0.44 | 0.0 1.6 | 0.0 0.5 | 1 8 | 0 0 | 1 2 | 0 0 | 20 4 | 4 8 | 5arm 3arm | 1 1 | nd nd | 0.42 0.21 | 4 2 | 9 | 2 | 7 | 10 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------GGAAAUG--------------- | 4 | novel | |
| seed | -----------------------------------------------------------GCUGGAA------------------ | 3 | novel | |
| seed | ---------------------GUUCCUU-------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------UGCUGGA------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------------------------------------------TGGAAATGGAGGAAATCTA---- | 19 | 1 | 3 | |
| ----------------------------------------------------------TGCTGGAAATGGAGGAAATCT----- | 21 | - | 3 | |
| ---------------------------------------------------------TTGCTGGAAATGGAGGAAATCT----- | 22 | - | 1 | |
| --------------------TGTTCCTTGTATAGTGGGA--------------------------------------------- | 19 | - | 1 | |
| rat | gggaaagaaaggcttgactcTGTTCCTTGTATAGTGGGAtcctcagcctgggactctTTGCTGGAAATGGAGGAAATCTAtcct | |||
| ************************************************************************************ | ||||
| rat | ((((.(((.....((..(((((((((..(((....((..((((......))))..)).))).)))).)))))..))))).)))) | 0.980 -21.80 | ||
| rat | chromosome:3:141753806:141753889:1 | intergenic |
sblock8522 [novel_lenNOK_multiarm_DicerNOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.039 | no | no | 0.32/0.42 | 19/25/0.29 | 0.0 2.2 | 0.0 4.5 | 1 6 | 0 0 | 1 3 | 0 0 | 13 3 | 1 6 | 5arm 3arm | 1 1 | nd nd | 0.21 0.38 | 2 6 | 7 | 4 | 5 | 4 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------CUGGAAU----------------------------- | 3 | novel | |||
| seed | ---------------------------------------------------------CCUUUGA------------------- | 1 | novel | |||
| seed | ------------------------------------------------UGGAAUC---------------------------- | 1 | novel | |||
| seed | -------------------------------------------------GGAAUCA--------------------------- | 1 | novel | |||
| seed | --------------UGUAUUU-------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S1 | |||
| ----------------------------------------------TCTGGAATCATCCTTTGAT------------------ | 19 | 1 | - | - | 2 | |
| ------------------------------------------------TGGAATCATCCTTTGATACCTAAAA---------- | 25 | - | - | - | 1 | |
| --------------------------------------------------------TCCTTTGATACCTAAAATGGGTGT--- | 24 | - | - | - | 1 | |
| -----------------------------------------------CTGGAATCATCCTTTGATACCT-------------- | 22 | - | - | 1 | - | |
| -------------TTGTATTTGGAGGAACACG--------------------------------------------------- | 19 | - | 1 | - | - | |
| rat | gcatactcaccgtTTGTATTTGGAGGAACACGtggctggaacggatTCTGGAATCATCCTTTGATACCTAAAATGGGTGTgca | |||||
| *********************************************************************************** | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000057494 ENSRNOG00000037844 | |||||
| rat | (((((((((......(((((.(((((((..(((.......)))..)))).......)))...)))))......))))))))). | 0.470 -23.71 | ||||
| rat | chromosome:4:120131648:120131730:-1 | Same_strand|Intronic_coding|ENSRNOT00000057494|ENSRNOG00000037844 ## ENSRNOG00000037844|protein_coding|| |
novel_lenNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH (11 loci)
block304646 [novel_lenNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.268 | no | no | 0.56/0.63 | 18/19/0.00 | 1.5 | 1.0 | 2 | 0 | 2 | 0 | 4 | -4 | 5arm_loop | 1 | nd | 0.32 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----CGGUCAG------------------------------------------- | 1 | novel | |
| seed | --------UCAGGAA---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| -------GTCAGGAAGAGAGCACCA------------------------------ | 18 | 1 | - | |
| ----GCGGTCAGGAAGAGAGCAC-------------------------------- | 19 | - | 1 | |
| rat | gctaGCGGTCAGGAAGAGAGCACCAagaaatcctagttcttaacccgggccgggc | |||
| ******************************************************* | ||||
| ----------------------------------------------------------------- | ENSRNOT00000061071 ENSRNOG00000004726 Mapkapk2 | |||
| ----------------------------------------------------------------- | ENSRNOT00000061070 ENSRNOG00000004726 Mapkapk2 | |||
| rat | (((..(((((.((..((((((..............))))))...)).)))))))) | 1.000 -15.34 | ||
| rat | chromosome:13:44041652:44041706:1 | Opposite_strand|Intronic_coding|ENSRNOT00000061071|ENSRNOG00000004726 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000006440|ENSRNOG00000004726 ## ENSRNOG00000004726|protein_coding|Mapkapk2|MAP kinase-activated protein kinase 2 [Source:RefSeq_peptide;Acc:NP_835203] |
block438284 [novel_lenNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.038 | no | no | 0.48/0.58 | 19/25/0.00 | 4.0 | 1.0 | 2 | 0 | 2 | 0 | 4 | -1 | 5arm_loop | 10 | nd | 0.32 | 2 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------CAUCUUG---------------------------------------------- | 1 | novel | |
| seed | -----AAGUAAA------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| ----CAAGTAAACCATCTTGTGCACCCAC------------------------------------- | 25 | - | 1 | |
| ------------CCATCTTGTGCACCCACGA----------------------------------- | 19 | 1 | - | |
| rat | ggtcCAAGTAAACCATCTTGTGCACCCACGAagcctgcgggagcagaagtaagggatgctgaagcc | |||
| ****************************************************************** | ||||
| rat | (((...((((..((..(((.(((.(((.((.....)).))).))).)))...))..))))...))) | 0.990 -22.50 | ||
| rat | chromosome:15:27880289:27880354:-1 | intergenic |
block799567 [novel_lenNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.507 | no | no | 0.50/0.53 | 18/20/0.33 | 1.7 | 2.7 | 3 | 0 | 2 | 0 | 1 | -18 | 3arm_loop | 1 | nd | 0.47 | 3 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------AUGACAA---------------- | 1 | novel | |
| seed | ---------------------CAAUCAC------------ | 1 | novel | |
| seed | ------------------UGACAAU--------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S2 | |||
| -----------------ATGACAATCACAGCCCAAGC--- | 20 | 1 | - | |
| --------------------ACAATCACAGCCCAAGCAC- | 19 | 1 | - | |
| ----------------GATGACAATCACAGCCCA------ | 18 | - | 1 | |
| rat | cgagcgccggccccagGATGACAATCACAGCCCAAGCACg | |||
| **************************************** | ||||
| rat | ((.((...(((.....(((....)))...)))...)).)) | 1.000 -8.30 | ||
| rat | chromosome:19:15751011:15751050:1 | intergenic ## {SimpF: oe = 0.76 1 CpG} |
block840777 [novel_lenNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.779 | no | no | 0.42/0.46 | 18/24/0.33 | 1.3 | 3.0 | 6 | 0 | 3 | 0 | 4 | -1 | 5arm_loop | 5 | nd | 0.32 | 2 | 6 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------UGGAUCG------------------------------------------------------------ | 3 | novel | ||
| seed | -----CUGGAUC------------------------------------------------------------- | 1 | novel | ||
| seed | -------GGAUCGU----------------------------------------------------------- | 1 | novel | ||
| seed | ------------GUAGAAC------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S2 | |||
| -----CTGGATCGTAGAACTTGT-------------------------------------------------- | 18 | - | - | 2 | |
| -----------CGTAGAACTTGTTGCTGAT------------------------------------------- | 19 | 1 | - | - | |
| -----CTGGATCGTAGAACTTGTTGCTGA-------------------------------------------- | 24 | - | 1 | - | |
| ------TGGATCGTAGAACTTGTTGCTG--------------------------------------------- | 22 | - | - | 1 | |
| ----ACTGGATCGTAGAACTTGT-------------------------------------------------- | 19 | - | - | 1 | |
| rat | cagcACTGGATCGTAGAACTTGTTGCTGATtcttgaccttgtattcagattaactgttcccttggtatatgtt | ||||
| ************************************************************************* | |||||
| rat | .((((....((((..((((..(((.((((...............))))...))).))))...))))...)))) | 0.470 -9.86 | |||
| rat | chromosome:1:45810548:45810620:-1 | intergenic |
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