other hairpins
novel_rep_lenNOK_cloningOK_randfoldOK (11 loci)
novel_Multihit_5varHIGH_nonpairedHIGH (10 loci)
block1591078 [novel_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.207 | no | no | 0.57/0.62 | 21/24/1.00 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 15 4 | 0 8 | 3arm 3arm | 8 26 | nd nd | 0.43 0.46 | 3 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------UCGGAUA---------------------------- | 1 | novel | |
| seed | -------------------------------------------------CCACCAC----------------- | 1 | novel | |
| seed | ----------------------------------------------CUUCCAC-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------------ATCGGATACCTTCCACCACCC--------------- | 21 | - | 1 | |
| ---------------------------------------------CCTTCCACCACCCAGTCCCCAACT---- | 24 | 1 | - | |
| ------------------------------------------------TCCACCACCCAGTCCCCAACT---- | 21 | - | 1 | |
| rat | gatcaagggagtcttgtgctggtaggcccctatatgtATCGGATACCTTCCACCACCCAGTCCCCAACTatca | |||
| ************************************************************************* | ||||
| rat | (((...((((.....(((.(((.(((..((.((....)).))...))).))).)))....)))).....))). | 0.850 -15.40 | ||
| rat | chromosome:4:150447986:150448058:-1 | intergenic |
block1591108 [novel_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.207 | no | no | 0.57/0.62 | 21/24/1.00 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 15 4 | 0 8 | 3arm 3arm | 8 26 | nd nd | 0.43 0.46 | 3 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------UCGGAUA---------------------------- | 1 | novel | |
| seed | -------------------------------------------------CCACCAC----------------- | 1 | novel | |
| seed | ----------------------------------------------CUUCCAC-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------------ATCGGATACCTTCCACCACCC--------------- | 21 | - | 1 | |
| ---------------------------------------------CCTTCCACCACCCAGTCCCCAACT---- | 24 | 1 | - | |
| ------------------------------------------------TCCACCACCCAGTCCCCAACT---- | 21 | - | 1 | |
| rat | gatcaagggagtcttgtgctggtaggcccctatatgtATCGGATACCTTCCACCACCCAGTCCCCAACTatca | |||
| ************************************************************************* | ||||
| rat | (((...((((.....(((.(((.(((..((.((....)).))...))).))).)))....)))).....))). | 0.850 -15.40 | ||
| rat | chromosome:4:150452340:150452412:-1 | intergenic |
block1591133 [novel_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.207 | no | no | 0.57/0.62 | 21/24/1.00 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 15 4 | 0 8 | 3arm 3arm | 8 26 | nd nd | 0.43 0.46 | 3 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------UCGGAUA---------------------------- | 1 | novel | |
| seed | -------------------------------------------------CCACCAC----------------- | 1 | novel | |
| seed | ----------------------------------------------CUUCCAC-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------------ATCGGATACCTTCCACCACCC--------------- | 21 | - | 1 | |
| ---------------------------------------------CCTTCCACCACCCAGTCCCCAACT---- | 24 | 1 | - | |
| ------------------------------------------------TCCACCACCCAGTCCCCAACT---- | 21 | - | 1 | |
| rat | gatcaagggagtcttgtgctggtaggcccctatatgtATCGGATACCTTCCACCACCCAGTCCCCAACTatca | |||
| ************************************************************************* | ||||
| rat | (((...((((.....(((.(((.(((..((.((....)).))...))).))).)))....)))).....))). | 0.850 -15.40 | ||
| rat | chromosome:4:150454498:150454570:-1 | intergenic |
block1591187 [novel_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.207 | no | no | 0.57/0.62 | 21/24/1.00 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 15 4 | 0 8 | 3arm 3arm | 8 26 | nd nd | 0.43 0.46 | 3 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------UCGGAUA---------------------------- | 1 | novel | |
| seed | -------------------------------------------------CCACCAC----------------- | 1 | novel | |
| seed | ----------------------------------------------CUUCCAC-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------------ATCGGATACCTTCCACCACCC--------------- | 21 | - | 1 | |
| ---------------------------------------------CCTTCCACCACCCAGTCCCCAACT---- | 24 | 1 | - | |
| ------------------------------------------------TCCACCACCCAGTCCCCAACT---- | 21 | - | 1 | |
| rat | gatcaagggagtcttgtgctggtaggcccctatatgtATCGGATACCTTCCACCACCCAGTCCCCAACTatca | |||
| ************************************************************************* | ||||
| rat | (((...((((.....(((.(((.(((..((.((....)).))...))).))).)))....)))).....))). | 0.850 -15.40 | ||
| rat | chromosome:4:150573775:150573847:-1 | intergenic |
block1591212 [novel_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.207 | no | no | 0.57/0.62 | 21/24/1.00 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 15 4 | 0 8 | 3arm 3arm | 8 26 | nd nd | 0.43 0.46 | 3 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------UCGGAUA---------------------------- | 1 | novel | |
| seed | -------------------------------------------------CCACCAC----------------- | 1 | novel | |
| seed | ----------------------------------------------CUUCCAC-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------------ATCGGATACCTTCCACCACCC--------------- | 21 | - | 1 | |
| ---------------------------------------------CCTTCCACCACCCAGTCCCCAACT---- | 24 | 1 | - | |
| ------------------------------------------------TCCACCACCCAGTCCCCAACT---- | 21 | - | 1 | |
| rat | gatcaagggagtcttgtgctggtaggcccctatatgtATCGGATACCTTCCACCACCCAGTCCCCAACTatca | |||
| ************************************************************************* | ||||
| rat | (((...((((.....(((.(((.(((..((.((....)).))...))).))).)))....)))).....))). | 0.850 -15.40 | ||
| rat | chromosome:4:150575944:150576016:-1 | intergenic |
block1591235 [novel_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.207 | no | no | 0.57/0.62 | 21/24/1.00 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 15 4 | 0 8 | 3arm 3arm | 8 26 | nd nd | 0.43 0.46 | 3 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------UCGGAUA---------------------------- | 1 | novel | |
| seed | -------------------------------------------------CCACCAC----------------- | 1 | novel | |
| seed | ----------------------------------------------CUUCCAC-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------------ATCGGATACCTTCCACCACCC--------------- | 21 | - | 1 | |
| ---------------------------------------------CCTTCCACCACCCAGTCCCCAACT---- | 24 | 1 | - | |
| ------------------------------------------------TCCACCACCCAGTCCCCAACT---- | 21 | - | 1 | |
| rat | gatcaagggagtcttgtgctggtaggcccctatatgtATCGGATACCTTCCACCACCCAGTCCCCAACTatca | |||
| ************************************************************************* | ||||
| rat | (((...((((.....(((.(((.(((..((.((....)).))...))).))).)))....)))).....))). | 0.850 -15.40 | ||
| rat | chromosome:4:150578264:150578336:-1 | intergenic |
block1591268 [novel_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.207 | no | no | 0.57/0.62 | 21/24/1.00 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 15 4 | 0 8 | 3arm 3arm | 8 26 | nd nd | 0.43 0.46 | 3 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------UCGGAUA---------------------------- | 1 | novel | |
| seed | -------------------------------------------------CCACCAC----------------- | 1 | novel | |
| seed | ----------------------------------------------CUUCCAC-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------------ATCGGATACCTTCCACCACCC--------------- | 21 | - | 1 | |
| ---------------------------------------------CCTTCCACCACCCAGTCCCCAACT---- | 24 | 1 | - | |
| ------------------------------------------------TCCACCACCCAGTCCCCAACT---- | 21 | - | 1 | |
| rat | gatcaagggagtcttgtgctggtaggcccctatatgtATCGGATACCTTCCACCACCCAGTCCCCAACTatca | |||
| ************************************************************************* | ||||
| rat | (((...((((.....(((.(((.(((..((.((....)).))...))).))).)))....)))).....))). | 0.850 -15.40 | ||
| rat | chromosome:4:150582715:150582787:-1 | intergenic |
block1591706 [novel_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.207 | no | no | 0.57/0.62 | 21/24/1.00 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 15 4 | 0 8 | 3arm 3arm | 8 26 | nd nd | 0.43 0.46 | 3 5 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------UCGGAUA---------------------------- | 1 | novel | |
| seed | -------------------------------------------------CCACCAC----------------- | 1 | novel | |
| seed | ----------------------------------------------CUUCCAC-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------------ATCGGATACCTTCCACCACCC--------------- | 21 | - | 1 | |
| ---------------------------------------------CCTTCCACCACCCAGTCCCCAACT---- | 24 | 1 | - | |
| ------------------------------------------------TCCACCACCCAGTCCCCAACT---- | 21 | - | 1 | |
| rat | gatcaagggagtcttgtgctggtaggcccctatatgtATCGGATACCTTCCACCACCCAGTCCCCAACTatca | |||
| ************************************************************************* | ||||
| rat | (((...((((.....(((.(((.(((..((.((....)).))...))).))).)))....)))).....))). | 0.850 -15.40 | ||
| rat | chromosome:4:150752025:150752097:-1 | intergenic |
block2646743 [novel_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.185 | no | no | 0.48/0.58 | 22/24/1.00 | 1.8 | 0.8 | 4 | 0 | 3 | 0 | 16 | 16 | 5arm | 25 | nd | 0.35 | 3 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------GGAUCAG--------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------UCAGCCA------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | -----------------CGGAUCA---------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------GAUCAGC-------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T3S2 | |||
| -----------------CGGATCAGCCATGACCTCTCAGA------------------------------------------------------------------------ | 23 | - | - | 1 | |
| ----------------CCGGATCAGCCATGACCTCTCAGA------------------------------------------------------------------------ | 24 | - | 1 | - | |
| ------------------GGATCAGCCATGACCTCTCAGA------------------------------------------------------------------------ | 22 | 1 | - | - | |
| --------------------ATCAGCCATGACCTCTCAGATTC--------------------------------------------------------------------- | 23 | - | 1 | - | |
| rat | aggttagccccatactCCGGATCAGCCATGACCTCTCAGATTCgtcaggattattccaccgaagtggaagccgcggtgaactgcctggtcagcttgcacctgcgggcctcct | ||||
| **************************************************************************************************************** | |||||
| -------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000023126 ENSRNOG00000017065 RGD1559882_predicted | ||||
| ................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000031814 ENSRNOG00000025351 LOC367342 | ||||
| rat | (((...((((((......((...(((..(((((...(((.((((((.((....((((((....)))))).))..)))))))))...))))))))....)))).))))..))) | 0.400 -35.50 | |||
| rat | chromosome:9:107132310:107132421:1 | Opposite_strand|Intronic_coding|ENSRNOT00000023126|ENSRNOG00000017065 ## Same_strand|Boundary_non-coding|ENSRNOT00000031814|ENSRNOG00000025351 ## ENSRNOG00000025351|pseudogene|LOC367342| ## ENSRNOG00000017065|protein_coding|RGD1559882_predicted| |
block964441 [novel_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.294 | no | no | 0.50/0.53 | 19/24/0.71 | 2.6 | 1.4 | 7 | 0 | 3 | 0 | 6 | 1 | 3arm | 21 | nd | 0.41 | 3 | 7 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------------UCCAAUG------------------------ | 4 | novel | ||
| seed | ------------------------------------------GUGUCAA------------------ | 3 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -----------------------------------------TGTGTCAATGGTGGGTTGG------- | 19 | 1 | - | 1 | |
| -----------------------------------GTCCAATGTGTCAATGGTGGGTTG-------- | 24 | - | - | 2 | |
| -----------------------------------GTCCAATGTGTCAATGGTGG------------ | 20 | - | 1 | - | |
| -----------------------------------------TGTGTCAATGGTGGGTTGGT------ | 20 | - | - | 1 | |
| -----------------------------------GTCCAATGTGTCAATGGTGGGT---------- | 22 | - | - | 1 | |
| rat | tggacaaagcataaatgaggccatggggttgaaaaGTCCAATGTGTCAATGGTGGGTTGGTttccac | ||||
| ******************************************************************* | |||||
| ----------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||||
| rat | (((((((..(((...(((.((....(((((....)))))...)).)))...)))..)))...)))). | 0.930 -15.00 | |||
| rat | chromosome:1:52238019:52238085:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
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