other hairpins
novel_Multihit_5varHIGH_nonpairedHIGH (10 loci)
novel_cloningOK_multiarm_5varHIGH_loopOverlap (10 loci)
block341182 [novel_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.795 | no | no | 0.43/0.70 | 18/25/0.71 | 0.3 10.6 2.8 | 1.0 10.0 5.2 | 7 10 4 | 0 0 0 | 1 2 1 | 0 0 0 | 0 8 31 | 19 -4 -16 | 5arm 5arm_loop 5arm_loop_3arm | 1 1 1 | 17 27 49 | 0.63 0.20 0.35 | 8 2 6 | 21 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -GCUUGAU-------------------------------------------------------------------------------- | 6 | novel | |
| seed | ---------CCGUGAA------------------------------------------------------------------------ | 2 | novel | |
| seed | ------------------------CACUGGU--------------------------------------------------------- | 2 | novel | |
| seed | ----------------------AGCACUG----------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------UGUCCGU-------------------------------------------- | 1 | novel | |
| seed | ------------------------------------CUGUCCG--------------------------------------------- | 1 | novel | |
| seed | --------------------------------GCAGCUG------------------------------------------------- | 1 | novel | |
| seed | --------------------AAAGCAC------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------AAGCACU------------------------------------------------------------ | 1 | novel | |
| seed | ---UUGAUGC------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------GGUCGCA----------------------------------------------------- | 1 | novel | |
| seed | -----------------------GCACUGG---------------------------------------------------------- | 1 | novel | |
| seed | ----------------AGAGAAA----------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------AGCUGUC----------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| AGCTTGATGCCGTGAAAGAG-------------------------------------------------------------------- | 20 | 3 | - | |
| -----------------------------------GCTGTCCGTCAGAGGATGAAGTG------------------------------ | 23 | 1 | - | |
| AGCTTGATGCCGTGAAAGA--------------------------------------------------------------------- | 19 | 1 | - | |
| --CTTGATGCCGTGAAAGAGAAA----------------------------------------------------------------- | 21 | 1 | - | |
| ---------------AAGAGAAAGCACTGGTCGCA----------------------------------------------------- | 20 | - | 1 | |
| --------------------AAAGCACTGGTCGCAGCTG------------------------------------------------- | 19 | 1 | - | |
| -----------------------GCACTGGTCGCAGCTGTCC---------------------------------------------- | 19 | 1 | - | |
| ---------------------AAGCACTGGTCGCAGCTGTC----------------------------------------------- | 20 | - | 1 | |
| ------------------------------------CTGTCCGTCAGAGGATGAAGTG------------------------------ | 22 | 1 | - | |
| -------------------GAAAGCACTGGTCGCAGC--------------------------------------------------- | 18 | 1 | - | |
| -----------------------GCACTGGTCGCAGCTGTCCG--------------------------------------------- | 20 | - | 1 | |
| ---------------------------------CAGCTGTCCGTCAGAGGATGAAGTG------------------------------ | 25 | 1 | - | |
| ---------------------------TGGTCGCAGCTGTCCGTCA------------------------------------------ | 19 | 1 | - | |
| AGCTTGATGCCGTGAAAGAGA------------------------------------------------------------------- | 21 | 1 | - | |
| AGCTTGATGCCGTGAAAGAGAA------------------------------------------------------------------ | 22 | 1 | - | |
| -------------------------------CGCAGCTGTCCGTCAGAGGA------------------------------------- | 20 | 1 | - | |
| --------GCCGTGAAAGAGAAAGCACTG----------------------------------------------------------- | 21 | 1 | - | |
| ----------------------AGCACTGGTCGCAGCTGTCCGTCA------------------------------------------ | 24 | 1 | - | |
| --------GCCGTGAAAGAGAAAGCACTGGTC-------------------------------------------------------- | 24 | 1 | - | |
| rat | AGCTTGATGCCGTGAAAGAGAAAGCACTGGTCGCAGCTGTCCGTCAGAGGATGAAGTGctccagtatgcagagatttggagagagagc | |||
| **************************************************************************************** | ||||
| +++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000003921 ENSRNOG00000002911 Alb | |||
| rat | .((((....(((...........(((((((..(((.((((((......))))..))))).)))))..)).......))).....)))) | 0.800 -19.37 | ||
| rat | chromosome:14:19136649:19136736:-1 | Same_strand|Boundary_coding|ENSRNOT00000003921|ENSRNOG00000002911 ## ENSRNOG00000002911|protein_coding|Alb|Serum albumin precursor. [Source:UniProtKB/Swiss-Prot;Acc:P02770] |
block2644068 [novel_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.073 | no | no | 0.32/0.45 | 19/24/0.91 | 0.0 2.5 | 0.0 1.8 | 6 4 | 0 0 | 1 2 | 0 0 | 44 18 | -17 -2 | 5arm_loop_3arm 3arm | 1 2 | nd nd | 0.25 0.18 | 4 1 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------AUGGUCU---------------------------------------------- | 6 | novel | |
| seed | -----------------------------------------------------------AACAUAC-------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------AGGCUAA------------------------------------- | 2 | novel | |
| seed | -----------------------------------------------GGUCUUU-------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| --------------------------------------------TATGGTCTTTAGGCTAACATACCT------------------------------ | 24 | - | 6 | |
| -----------------------------------------------------TAGGCTAACATACCTACCCTCA----------------------- | 22 | - | 2 | |
| ----------------------------------------------------------TAACATACCTACCCTCATTATA------------------ | 22 | 1 | - | |
| ----------------------------------------------TGGTCTTTAGGCTAACATAC-------------------------------- | 20 | - | 1 | |
| ----------------------------------------------------------TAACATACCTACCCTCATT--------------------- | 19 | - | 1 | |
| rat | gctactcagtaagccttttatttttgaggaatcttgggatgttgTATGGTCTTTAGGCTAACATACCTACCCTCAttatatccttgctctcgtttagc | |||
| ************************************************************************************************** | ||||
| rat | ((((...((((((.....(((...(((((.....((((((((....(((((....))))))))).)))).)))))..)))..))))))......)))) | 0.960 -20.70 | ||
| rat | chromosome:9:104947984:104948081:1 | intergenic |
block2140316 [novel_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.237 | no | no | 0.50/0.60 | 18/23/0.73 | 3.1 0.0 0.0 | 3.6 0.0 0.0 | 8 4 4 | 0 0 0 | 2 6 1 | 0 0 0 | 31 24 19 | -20 2 8 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.40 0.19 0.10 | 3 2 1 | 22 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------------------------AAGCAUC------------------------------------- | 9 | novel | ||||||
| seed | -----------------------------------------------------------------------CCACACA------------------------------- | 4 | novel | ||||||
| seed | -----------------------------------------------------------CACCGUA------------------------------------------- | 2 | novel | ||||||
| seed | ----------------------------------------------------AUCCGUU-------------------------------------------------- | 2 | novel | ||||||
| seed | ---------------------------------------------------GAUCCGU--------------------------------------------------- | 2 | novel | ||||||
| seed | -------------------------------------------------------CGUUCAC----------------------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------------------GCAUCCA----------------------------------- | 1 | novel | ||||||
| seed | ------------------------------------------------------CCGUUCA------------------------------------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| ----------------------------------------------------------------TAAGCATCCACACAGCCCTCT------------------------ | 21 | 1 | - | - | - | - | - | 4 | |
| ----------------------------------------------------------------------TCCACACAGCCCTCTTGCTG------------------- | 20 | - | - | - | - | - | - | 4 | |
| ----------------------------------------------------------------TAAGCATCCACACAGCCC--------------------------- | 18 | - | 1 | 1 | - | 1 | - | - | |
| --------------------------------------------------TGATCCGTTCACCGTAAGCA--------------------------------------- | 20 | - | - | - | - | - | - | 2 | |
| ---------------------------------------------------GATCCGTTCACCGTAAGCA--------------------------------------- | 19 | - | - | - | - | - | - | 2 | |
| ----------------------------------------------------------TCACCGTAAGCATCCACACA------------------------------- | 20 | - | - | - | - | - | - | 2 | |
| ------------------------------------------------------------------AGCATCCACACAGCCCTCT------------------------ | 19 | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------CCGTTCACCGTAAGCATCCACAC-------------------------------- | 23 | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------TAAGCATCCACACAGCCCTCTT----------------------- | 22 | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------TCCGTTCACCGTAAGCATCCACA--------------------------------- | 23 | - | - | - | 1 | - | - | - | |
| rat | gactaaggagaaaggcaagcatggagaagggactacaggataatgggatgTGATCCGTTCACCGTAAGCATCCACACAGCCCTCTTGCTGccttttggccccttcttcc | ||||||||
| ************************************************************************************************************* | |||||||||
| rat | ((..((((.(((((((.((((...((.((((.((.........((((((((....((.....))...)))))).)).)))))))))))))))))))....))))..)). | 0.700 -30.70 | |||||||
| rat | chromosome:7:96036000:96036108:-1 | intergenic |
block2140751 [novel_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.211 | no | no | 0.38/0.52 | 20/24/1.00 | 1.7 0.0 | 1.0 0.0 | 23 1 | 0 0 | 3 1 | 0 0 | 24 1 | -18 7 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.40 0.29 | 4 3 | 35 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------AGGAUGG-------------------------------- | 15 | novel | ||
| seed | ------------------------------GGCCUCG--------------------------- | 14 | novel | ||
| seed | -----------------------------------CGGAUUA---------------------- | 4 | novel | ||
| seed | ---------------------GUUUAGG------------------------------------ | 1 | novel | ||
| seed | -------------------------------------------ACUAUCC-------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T5S1 | T5S2 | |||
| ------------------------TAGGATGGCCTCGGATTATACT------------------ | 22 | - | 15 | - | |
| -----------------------------TGGCCTCGGATTATACTATC--------------- | 20 | - | 8 | 1 | |
| -----------------------------TGGCCTCGGATTATACTATCCCA------------ | 23 | 1 | 2 | - | |
| -----------------------------TGGCCTCGGATTATACTATCCCAA----------- | 24 | - | 2 | - | |
| ----------------------------------TCGGATTATACTATCCCAACA--------- | 21 | - | 2 | - | |
| ----------------------------------TCGGATTATACTATCCCAAC---------- | 20 | - | 2 | - | |
| ------------------------------------------TACTATCCCAACAAGGTGGGC- | 21 | - | 1 | - | |
| --------------------AGTTTAGGATGGCCTCGGATTA---------------------- | 22 | - | 1 | - | |
| rat | tggccaaatggctgggttttagttTAGGATGGCCTCGGATTATACTATCccaacaaggtgggca | ||||
| **************************************************************** | |||||
| rat | ((.(((..((..((((...((((.(((..((....))..))).)))).)))).))...))).)) | 0.880 -16.60 | |||
| rat | chromosome:7:96053729:96053792:-1 | intergenic |
block1093648 [novel_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.125 | no | no | 0.43/0.67 | 18/26/0.74 | 2.6 4.7 | 3.8 1.3 | 12 7 | 0 0 | 3 4 | 0 0 | 0 20 | 0 -15 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.25 0.62 | 3 7 | 19 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------GCAACCC---------------------------------------------------------------- | 6 | novel | ||||
| seed | --------------------------CCAAACA----------------------------------------------- | 4 | novel | ||||
| seed | ------CCUGCAA------------------------------------------------------------------- | 3 | novel | ||||
| seed | --CCUUCCU----------------------------------------------------------------------- | 2 | novel | ||||
| seed | ------------------------------ACACCUU------------------------------------------- | 1 | novel | ||||
| seed | -------------------------UCCAAAC------------------------------------------------ | 1 | novel | ||||
| seed | -UCCUUCC------------------------------------------------------------------------ | 1 | novel | ||||
| seed | ---------------------GCCUUCC---------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T5S1 | T5S2 | |||
| -----TCCTGCAACCCAGCCTGCCT------------------------------------------------------- | 20 | - | - | - | 2 | - | |
| --------TGCAACCCAGCCTGCCTTCCAAACAC---------------------------------------------- | 26 | - | - | - | 2 | - | |
| -------------------------TCCAAACACCTTGGTTCTCACAGA------------------------------- | 24 | - | - | 1 | 1 | - | |
| ------------------------TTCCAAACACCTTGGTTCTCACA--------------------------------- | 23 | 1 | - | - | - | - | |
| --------TGCAACCCAGCCTGCCTTCCAAA------------------------------------------------- | 23 | - | - | - | 1 | - | |
| -------------------------TCCAAACACCTTGGTTCTCA----------------------------------- | 20 | 1 | - | - | - | - | |
| -TCCTTCCTGCAACCCAGCCTG---------------------------------------------------------- | 21 | - | - | - | 1 | - | |
| --------TGCAACCCAGCCTGCCTTCCA--------------------------------------------------- | 21 | - | - | - | 1 | - | |
| -TCCTTCCTGCAACCCAGCCTGCCT------------------------------------------------------- | 24 | - | - | - | 1 | - | |
| --------TGCAACCCAGCCTGCCTTCCAAAC------------------------------------------------ | 24 | 1 | - | - | - | - | |
| --------TGCAACCCAGCCTGCCTTCC---------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -----TCCTGCAACCCAGCCTGC--------------------------------------------------------- | 18 | - | - | - | 1 | - | |
| -------------------------TCCAAACACCTTGGTTCTCAC---------------------------------- | 21 | - | 1 | - | - | - | |
| TTCCTTCCTGCAACCCAGCCTG---------------------------------------------------------- | 22 | - | - | - | 1 | - | |
| -----------------------------AACACCTTGGTTCTCACA--------------------------------- | 18 | - | - | - | 1 | - | |
| --------------------TGCCTTCCAAACACCTTGGTTCTCAC---------------------------------- | 26 | - | - | - | 1 | - | |
| rat | TTCCTTCCTGCAACCCAGCCTGCCTTCCAAACACCTTGGTTCTCACAGAaggacacagcctgttgcctcacatgaagggt | ||||||
| ******************************************************************************** | |||||||
| rat | .((((((..(((((...((.(((((((.....((....)).......))))).))..))..))))).......)))))). | 0.920 -17.80 | |||||
| rat | chromosome:20:5543591:5543670:1 | intergenic |
block1094011 [novel_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.064 | no | no | 0.45/0.60 | 18/21/0.81 | 0.0 1.5 0.0 | 0.0 1.0 0.0 | 1 4 6 | 0 0 0 | 1 1 4 | 0 0 0 | 18 23 36 | 0 -10 -18 | 5arm 5arm_loop_3arm 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.30 0.48 0.45 | 3 7 8 | 16 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------------GAACCAG------------------------------------ | 10 | novel | |||
| seed | -----------------------------GAUGGUU-------------------------------------------- | 2 | novel | |||
| seed | ------------------------------AUGGUUU------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------AACCAGC----------------------------------- | 1 | novel | |||
| seed | ------------------------GCCAUGA------------------------------------------------- | 1 | novel | |||
| seed | -------------------CCCUUGC------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S1 | T4S2 | T5S1 | |||
| ------------------------------------TGAACCAGCACAAGCCTGTG------------------------ | 20 | 1 | 1 | - | 6 | |
| ----------------------------TGATGGTTTGAACCAGCACA-------------------------------- | 20 | - | - | - | 2 | |
| -----------------------TGCCATGATGGTTTGAACCAG------------------------------------ | 21 | - | - | - | 1 | |
| ------------------TCCCTTGCCATGATGGTTTG------------------------------------------ | 20 | - | - | - | 1 | |
| -----------------------------GATGGTTTGAACCAGCACA-------------------------------- | 19 | - | - | - | 1 | |
| ------------------------------------TGAACCAGCACAAGCCTG-------------------------- | 18 | - | - | - | 1 | |
| ------------------------------------TGAACCAGCACAAGCCTGT------------------------- | 19 | - | - | 1 | - | |
| -------------------------------------GAACCAGCACAAGCCTGTGG----------------------- | 20 | 1 | - | - | - | |
| rat | ctttgtgccatcccacactcccttgccaTGATGGTTTGAACCAGCACAAGCCTGTGgcgggagagggctgagccacccgg | |||||
| ******************************************************************************** | ||||||
| rat | ...((.((((.(((...(((((..(((((...((((((........)))))).)))))))))).))).)).))))..... | 0.980 -30.30 | ||||
| rat | chromosome:20:5555843:5555922:1 | intergenic |
block1469573 [novel_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.405 | no | no | 0.26/0.45 | 19/22/0.80 | 0.0 3.7 0.0 | 0.0 4.5 0.0 | 15 10 2 | 0 0 0 | 2 3 1 | 0 0 0 | 14 23 37 | 10 -5 -12 | 5arm 5arm_loop_3arm 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.32 0.26 0.52 | 4 2 3 | 30 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------AGCAUAA--------------------------------------------------------------------- | 17 | novel | |||
| seed | ------------------------UAACAUC------------------------------------------------------------ | 4 | novel | |||
| seed | --------------------------------CGGUAUC---------------------------------------------------- | 3 | novel | |||
| seed | ------------------------------CUCGGUA------------------------------------------------------ | 2 | novel | |||
| seed | --------------------------------------CUACGUU---------------------------------------------- | 2 | novel | |||
| seed | -------------------------AACAUCU----------------------------------------------------------- | 1 | novel | |||
| seed | -------------GUAGCAU----------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| --------------TAGCATAAATTAACATCTCGGT------------------------------------------------------- | 22 | 1 | - | - | 15 | |
| -----------------------TTAACATCTCGGTATCTAC------------------------------------------------- | 19 | - | 1 | - | 3 | |
| -------------------------------TCGGTATCTACGTTCAAGGA---------------------------------------- | 20 | - | - | - | 3 | |
| -----------------------------TCTCGGTATCTACGTTCAAG------------------------------------------ | 20 | - | - | 1 | 1 | |
| -------------------------------------TCTACGTTCAAGGATAAGTGT--------------------------------- | 21 | - | - | - | 2 | |
| --------------TAGCATAAATTAACATCTC---------------------------------------------------------- | 19 | - | - | - | 1 | |
| ------------TGTAGCATAAATTAACATC------------------------------------------------------------ | 19 | 1 | - | - | - | |
| ------------------------TAACATCTCGGTATCTACGTTC--------------------------------------------- | 22 | - | - | - | 1 | |
| rat | ccagggagagcctgTAGCATAAATTAACATCTCGGTatctacgttcaaggataagtgtttacagaagagttggtgcataggtaggcagtgg | |||||
| ******************************************************************************************* | ||||||
| rat | (((......((((((.((((....((((.((((.(((..(((..((...))...)))..))).)).))))))))))))))))......))) | 0.980 -18.10 | ||||
| rat | chromosome:3:76945935:76946025:1 | intergenic |
block1470009 [novel_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.147 | no | no | 0.37/0.39 | 19/24/0.90 | 0.0 1.6 | 0.0 1.7 | 1 9 | 0 0 | 1 2 | 0 0 | 31 12 | -13 -22 | 5arm_loop_3arm 5arm_loop_3arm | 1 1 | nd nd | 0.47 0.26 | 7 2 | 10 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------------CUGAUUU---------------------------------- | 7 | miR-29a* | ||
| seed | -------------------------------------------UGACUUG--------------------------- | 2 | novel | ||
| seed | --------------------------------UGGUCUG-------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S2 | T5S1 | |||
| -----------------------------------TCTGATTTTGACTTGCACTCTAGA------------------ | 24 | 3 | - | 3 | |
| ------------------------------------------TTGACTTGCACTCTAGATTCTGT------------ | 23 | - | - | 2 | |
| -----------------------------------TCTGATTTTGACTTGCACTCT--------------------- | 21 | - | - | 1 | |
| -------------------------------TTGGTCTGATTTTGACTTG--------------------------- | 19 | - | 1 | - | |
| rat | tggagcatcacacgtttgttgagctgtgcttTTGGTCTGATTTTGACTTGCACTCTAGATTCTGTgagaggcatcat | ||||
| ***************************************************************************** | |||||
| rat | ((..((.((.((((...(((.((..((((....((((.......)))).)))).)).)))..)))).)).))..)). | 0.940 -19.20 | |||
| rat | chromosome:3:76962576:76962652:1 | intergenic |
block1695866 [novel_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.043 | no | no | 0.39/0.57 | 18/23/0.75 | 1.7 0.0 | 2.0 1.7 | 6 7 | 0 0 | 1 2 | 0 0 | 11 3 | -16 1 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.30 0.28 | 3 2 | 16 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------AGACAGU------------------ | 7 | novel | |
| seed | -----------------------------AGUCUAG----------------------- | 4 | novel | |
| seed | ------------------------AGCAAAG---------------------------- | 3 | novel | |
| seed | --------------------------CAAAGUC-------------------------- | 1 | novel | |
| seed | -----------------------UAGCAAA----------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| ----------------------------AAGTCTAGACAGTGCCTTAG----------- | 20 | - | 4 | |
| ---------------------------------TAGACAGTGCCTTAGCCCAGGAA--- | 23 | 2 | 1 | |
| -----------------------TAGCAAAGTCTAGACAGTG----------------- | 19 | - | 2 | |
| ---------------------------------TAGACAGTGCCTTAGCCCAG------ | 20 | - | 2 | |
| ----------------------TTAGCAAAGTCTAGACAGTG----------------- | 20 | - | 1 | |
| -----------------------TAGCAAAGTCTAGACAGT------------------ | 18 | - | 1 | |
| -------------------------GCAAAGTCTAGACAGTGCCT-------------- | 20 | - | 1 | |
| ---------------------------------TAGACAGTGCCTTAGCCCAGG----- | 21 | - | 1 | |
| ---------------------------------TAGACAGTGCCTTAGCCC-------- | 18 | 1 | - | |
| rat | tgagctcaaggttaaggtgtgctTAGCAAAGTCTAGACAGTGCCTTAGCCCAGGAAtca | |||
| *********************************************************** | ||||
| rat | .((..((..((((((((((((..(((......)))..)).))))))))))...)).)). | 0.970 -17.20 | ||
| rat | chromosome:4:164249320:164249378:1 | intergenic |
sblock11827 [novel_cloningOK_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.136 | no | no | 0.38/0.64 | 19/22/0.74 | 2.1 0.0 1.2 0.0 0.0 | 0.9 0.0 0.8 0.0 0.0 | 7 1 5 1 1 | 0 0 0 0 0 | 4 1 2 1 1 | 0 0 0 0 0 | 4 31 37 30 0 | 18 -7 -5 6 37 | 5arm 5arm_loop 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.26 0.55 0.40 0.43 0.63 | 2 8 3 3 7 | 19 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ----------AGUCAAG-------------------------------------------------------------------------------------------------- | 5 | novel | ||||
| seed | -----CCUCUAG------------------------------------------------------------------------------------------------------- | 5 | novel | ||||
| seed | ------------------------------------------------------UCCCAGG------------------------------------------------------ | 3 | novel | ||||
| seed | ------CUCUAGU------------------------------------------------------------------------------------------------------ | 1 | novel | ||||
| seed | -----------------------------------------------------------------AAAUGUU------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------------GGUCUCA------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------------------------------------------------AGGAAAA------------ | 1 | novel | ||||
| seed | -------------------------------------------------------CCCAGGU----------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------GGCACUC---------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T2S2 | T3S2 | T5S1 | |||
| ---------TAGTCAAGCTACAGAGTTG--------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | 4 | |
| ----TCCTCTAGTCAAGCTACAGAGT----------------------------------------------------------------------------------------- | 22 | 1 | 1 | - | - | 3 | |
| -----------------------------------------------------TTCCCAGGTCTCAAATGTTCA----------------------------------------- | 21 | - | - | - | 1 | 2 | |
| ----------------------------------------------------------------CAAATGTTCATGCTACTGAGT------------------------------ | 21 | - | - | - | - | 1 | |
| -------------------------------TGGCACTCGAGTCCTCTGCCCA-------------------------------------------------------------- | 22 | - | - | - | - | 1 | |
| -----CCTCTAGTCAAGCTACAGAG------------------------------------------------------------------------------------------ | 20 | - | - | - | - | 1 | |
| -----------------------------------------------------------------------------------------------TAGGAAAAGCTCAGGAATGT | 20 | - | - | - | - | 1 | |
| ------------------------------------------------------TCCCAGGTCTCAAATGTTCA----------------------------------------- | 20 | - | - | - | - | 1 | |
| ----------------------------------------------------------AGGTCTCAAATGTTCATGCT------------------------------------- | 20 | - | - | - | - | 1 | |
| rat | acctTCCTCTAGTCAAGCTACAGAGTTGccctggcactcgagtcctctgcccaTTCCCAGGTCTCAAATGTTCAtgctactgagtagctctgctgtaggaaaagctcaggaatgt | ||||||
| ******************************************************************************************************************* | |||||||
| rat | .(((((((.((((..((((((..(((.((...((((...(((.(((............))).)))...))))...)).)))..))))))..)))).)))).......)))..... | 0.500 -31.11 | |||||
| rat | chromosome:8:72080534:72080648:-1 | intergenic |
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