other hairpins
novel_cloningOK_multiarm_5varHIGH_loopOverlap (10 loci)
novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH (10 loci)
block208785 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.472 | no | no | 0.35/0.59 | 18/24/0.95 | 0.0 1.0 1.0 | 0.0 1.5 1.0 | 7 2 2 | 0 0 0 | 3 1 1 | 0 0 0 | 6 15 6 | -1 0 9 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.42 0.43 0.50 | 4 5 5 | 21 | 3 | 1 | -2 |
| reads | miRBase family seed | ||||
| seed | -------CCUAAAC---------------------------------------------------------- | 10 | novel | ||
| seed | ---------------GACAAUC-------------------------------------------------- | 4 | novel | ||
| seed | ------------------------CAACAGU----------------------------------------- | 2 | novel | ||
| seed | ------------------------------------GAGGGAG----------------------------- | 1 | novel | ||
| seed | ---------------------------------------------CAUGCAG-------------------- | 1 | novel | ||
| seed | ---------------------CUACAAC-------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------AUCAUGC---------------------- | 1 | novel | ||
| seed | ----------------------------------GUGAGGG------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| ------TCCTAAACTGACAATCTACAACAG------------------------------------------ | 24 | 1 | - | 7 | |
| ------TCCTAAACTGACAATCTACA---------------------------------------------- | 20 | - | - | 2 | |
| --------------TGACAATCTACAACAGTC---------------------------------------- | 18 | - | 1 | - | |
| -----------------------ACAACAGTCCTGTGAGGGAGA---------------------------- | 21 | - | - | 1 | |
| --------------TGACAATCTACAACAGTCCTGT------------------------------------ | 22 | - | - | 1 | |
| -----------------------ACAACAGTCCTGTGAGGGAGAT--------------------------- | 22 | - | - | 1 | |
| --------------TGACAATCTACAACAGTCCTGTGA---------------------------------- | 24 | - | - | 1 | |
| --------------------------------------------TCATGCAGTGCCCAGACACA-------- | 20 | - | - | 1 | |
| --------------------TCTACAACAGTCCTGTGAGGGAGA---------------------------- | 24 | - | - | 1 | |
| -----------------------------------TGAGGGAGATCATGCAGTGCCC--------------- | 22 | - | - | 1 | |
| ---------------------------------TGTGAGGGAGATCATGCAGTG------------------ | 21 | - | - | 1 | |
| ------------------------------------------GATCATGCAGTGCCCAGACACAAA------ | 24 | - | - | 1 | |
| --------------TGACAATCTACAACAGTCCTGTG----------------------------------- | 23 | - | - | 1 | |
| rat | ttcttgTCCTAAACTGACAATCTACAACAGtcctgtgagggagatcatgcagtgcccagacacaaatggaaa | ||||
| ************************************************************************ | |||||
| rat | ((((((((....((((.((((((...(((....))).....))))..)))))).....)))).....)))). | 0.900 -12.20 | |||
| rat | chromosome:12:5604535:5604606:1 | intergenic |
sblock10027 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.370 | no | no | 0.48/0.58 | 19/22/0.91 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 5 1 2 2 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 22 42 35 20 | 8 -8 -2 11 | 5arm 3arm_loop 3arm_loop 3arm | 1 2 2 2 | nd nd nd nd | 0.33 0.53 0.35 0.45 | 5 7 4 3 | 11 | 2 | 0 | -2 |
| reads | miRBase family seed | |||
| seed | -----------------------AAUUCGA---------------------------------------------------------------------------------- | 6 | novel | |
| seed | -----------------------------------------------------------------------ACCCAGC---------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------UCCUGCU----------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------GGCCUUU----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------------TAATTCGAGTGTCCAGCTGTG--------------------------------------------------------------------- | 21 | - | 5 | |
| ----------------------------------------------------------------------TACCCAGCTCTTGGTCCCGAAT-------------------- | 22 | - | 2 | |
| ---------------------------------------------------------TTCCTGCTCAGCTTACCCAG----------------------------------- | 20 | 1 | 1 | |
| ---------------------------------------------------TGGCCTTTCCTGCTCAGCT------------------------------------------ | 19 | - | 1 | |
| ----------------------TAATTCGAGTGTCCAGCTGTGG-------------------------------------------------------------------- | 22 | - | 1 | |
| rat | gtgagtgcacagtcctattgttTAATTCGAGTGTCCAGCTGTGgctgcaggtggcctttcctgctcagctTACCCAGCTCTTGGTCCCGAATgctccaagctgcaaccttat | |||
| **************************************************************************************************************** | ||||
| rat | (((((....((((....(((....(((((.....(((((((.(((((((((........)))))..))))....)))))...))...)))))....)))))))....))))) | 0.410 -27.50 | ||
| rat | chromosome:6:93609332:93609443:-1 | intergenic |
sblock1915 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.134 | no | no | 0.30/0.57 | 19/25/0.71 | 0.0 0.8 0.0 0.7 | 0.0 1.5 0.0 4.0 | 8 4 2 3 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 5 11 16 4 | 6 -2 0 4 | 5arm 5arm_loop 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.52 0.40 0.58 0.47 | 5 5 5 5 | 21 | 2 | -8 | -11 |
| reads | miRBase family seed | |||
| seed | ------AAAACUU---------------------------------------------------------- | 11 | novel | |
| seed | -------------GGUACUA--------------------------------------------------- | 3 | novel | |
| seed | -------------------------------------GGCUAAG--------------------------- | 2 | novel | |
| seed | -----------------------------------------AAGCAAC----------------------- | 2 | novel | |
| seed | ------------UGGUACU---------------------------------------------------- | 1 | novel | |
| seed | -------AAACUUG--------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------GCAACCC--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| -----TAAAACTTGGTACTAAGGCAG--------------------------------------------- | 21 | - | 8 | |
| ------------------------------------TGGCTAAGCAACCCTACAA---------------- | 19 | - | 2 | |
| -----TAAAACTTGGTACTAAGGC----------------------------------------------- | 19 | - | 2 | |
| ----------------------------------------TAAGCAACCCTACAATTTAAGAA-------- | 23 | - | 1 | |
| ------------------------------------------AGCAACCCTACAATTTAAGAAAAAG---- | 25 | - | 1 | |
| ------------TGGTACTAAGGCAGCTCCCA--------------------------------------- | 20 | - | 1 | |
| ------AAAACTTGGTACTAAGGCAG--------------------------------------------- | 20 | - | 1 | |
| ----------------------------------------TAAGCAACCCTACAATTTA------------ | 19 | - | 1 | |
| ------------TGGTACTAAGGCAGCTCCCAC-------------------------------------- | 21 | - | 1 | |
| -----TAAAACTTGGTACTAAGGCA---------------------------------------------- | 20 | - | 1 | |
| -----------TTGGTACTAAGGCAGCTCCC---------------------------------------- | 20 | - | 1 | |
| ------------TGGTACTAAGGCAGCTCCCACA------------------------------------- | 22 | 1 | - | |
| rat | ttgccTAAAACTTGGTACTAAGGCAGctcccacaagtggctaagcaaccctacaatttaagaaaaagcaaa | |||
| *********************************************************************** | ||||
| rat | ((((......(((((.....(((..(((.(((....)))...)))...))).....))))).....)))). | 0.760 -11.40 | ||
| rat | chromosome:1:128269048:128269118:1 | intergenic |
sblock2741 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.263 | no | no | 0.43/0.72 | 18/23/0.75 | 0.4 1.0 0.0 0.0 | 0.7 0.0 0.2 0.0 | 7 4 4 1 | 0 0 0 0 | 2 2 3 1 | 0 0 0 0 | 0 10 26 0 | 6 -2 -16 4 | 5arm 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.62 0.44 0.37 0.65 | 10 3 4 9 | 16 | 4 | -15 | 0 |
| reads | miRBase family seed | |||||
| seed | -GUCUACC--------------------------------------------------- | 6 | novel | |||
| seed | ---------------------------CCAUCAG------------------------- | 4 | novel | |||
| seed | ------------GAGCCCA---------------------------------------- | 2 | novel | |||
| seed | ---------------------------------------CCCUUCA------------- | 1 | novel | |||
| seed | ---------------CCCAGAG------------------------------------- | 1 | novel | |||
| seed | ----UACCACC------------------------------------------------ | 1 | novel | |||
| seed | -----------AGAGCCC----------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T3S1 | T3S2 | |||
| --------------------------GCCATCAGTGGAACCCTTC-------------- | 19 | - | - | 2 | 1 | |
| AGTCTACCACCAGAGCCCAGAG------------------------------------- | 22 | - | - | 3 | - | |
| -----------AGAGCCCAGAGGGTGGCCATC--------------------------- | 21 | - | 2 | - | - | |
| AGTCTACCACCAGAGCCCAGAGG------------------------------------ | 23 | - | - | - | 2 | |
| ----------CAGAGCCCAGAGGGTGGCCATC--------------------------- | 22 | - | - | 1 | - | |
| ---CTACCACCAGAGCCCAGAGGG----------------------------------- | 21 | - | - | 1 | - | |
| --------------GCCCAGAGGGTGGCCATC--------------------------- | 18 | - | - | 1 | - | |
| --------------------------GCCATCAGTGGAACCCTTCA------------- | 20 | 1 | - | - | - | |
| --------------------------------------ACCCTTCAATGCAGCAAAGAA | 21 | - | - | 1 | - | |
| AGTCTACCACCAGAGCCCAGA-------------------------------------- | 21 | - | - | 1 | - | |
| rat | AGTCTACCACCAGAGCCCAGAGGGTGGCCATCAGTGGAACCCTTCAATGCAGCAAAGAA | |||||
| *********************************************************** | ||||||
| ...................................................................>> | ENSRNOT00000055957 ENSRNOG00000037113 NP_001100501.1 | |||||
| rat | ..............((...((((((..(((....))).))))))....))......... | 0.760 -13.30 | ||||
| rat | chromosome:10:71236367:71236425:1 | intergenic |
sblock3614 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.182 | no | no | 0.37/0.56 | 18/23/0.89 | 0.0 0.0 0.5 0.0 0.0 | 0.0 0.0 0.5 0.0 0.0 | 26 2 2 1 2 | 0 0 0 0 0 | 2 1 1 1 1 | 0 0 0 0 0 | 33 43 29 19 12 | -5 -6 8 21 27 | 5arm_loop_3arm 3arm_loop 3arm 3arm 3arm | 1 1 1 2 2 | nd nd nd nd nd | 0.35 0.45 0.55 0.63 0.45 | 6 5 7 10 6 | 38 | 2 | 0 | -18 |
| reads | miRBase family seed | |||
| seed | ----------------------------------GACACAA-------------------------------------------------------------------------- | 30 | novel | |
| seed | ------------------------------------------------------------------------------------CAAAUUG------------------------ | 2 | novel | |
| seed | ---------------------------------------------------AGCAAGC--------------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------------------CCGUGAU------------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------------------------UCCGUGA------------------------------------------- | 1 | novel | |
| seed | ---------------------------------UGACACA--------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------UUUCCUC------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------TGACACAAAAGCGGCCACAG-------------------------------------------------------------- | 20 | - | 26 | |
| -----------------------------------------------------------------------------------TCAAATTGAAAGCCGAGGGA------------ | 20 | - | 2 | |
| ---------------------------------TGACACAAAAGCGGCCAC---------------------------------------------------------------- | 18 | 1 | 1 | |
| --------------------------------------------------CAGCAAGCAGCTCTTTCCGTGA------------------------------------------- | 22 | - | 2 | |
| --------------------------------TTGACACAAAAGCGGCCACAG-------------------------------------------------------------- | 21 | - | 1 | |
| ----------------------------------------------------------------TTCCGTGATCTTGGTTTCCTCA----------------------------- | 22 | - | 1 | |
| ---------------------------------TGACACAAAAGCGGCCACAGCAA----------------------------------------------------------- | 23 | - | 1 | |
| -----------------------------------------------------------------------------GTTTCCTCAAATTGAAAGC------------------- | 19 | - | 1 | |
| -----------------------------------------------------------------TCCGTGATCTTGGTTTCCTC------------------------------ | 20 | - | 1 | |
| ---------------------------------TGACACAAAAGCGGCCACA--------------------------------------------------------------- | 19 | - | 1 | |
| rat | cttcctatgacctttccttgacctttctggcctTGACACAAAAGCGGCCACAGcaagcagctctttccgtgatcttggtttcctcaaattgaaagccgagggagaggtgggggag | |||
| ******************************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | |||
| rat | ((((((...((((((((((...(((((.((((..(((((((((((.((........)).))).)))..))).))..))))..........)))))...)))))))))).)))))) | 0.520 -35.20 | ||
| rat | chromosome:12:43046111:43046225:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
sblock3625 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.147 | no | no | 0.35/0.50 | 19/26/0.71 | 0.0 0.0 0.3 0.0 0.0 | 0.0 0.0 0.4 0.0 0.0 | 1 8 11 11 7 | 0 0 0 0 0 | 1 2 2 1 4 | 0 0 0 0 0 | 31 44 42 33 21 | 0 -11 -3 5 21 | 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm | 2 2 2 2 2 | nd nd nd nd nd | 0.32 0.60 0.43 0.43 0.47 | 4 6 7 5 4 | 48 | 6 | 0 | 4 |
| reads | miRBase family seed | |||||||
| seed | ---------------------------------------------------------------------------------UUUUCAU-------------------------------- | 11 | novel | |||||
| seed | -----------------------------------------------------------------AGCAAGA------------------------------------------------ | 11 | novel | |||||
| seed | ---------------------------------------------AAGACAC-------------------------------------------------------------------- | 9 | novel | |||||
| seed | ---------------------------------------------------------CAGGUGA-------------------------------------------------------- | 8 | miR-125a | |||||
| seed | ----------------------------------------------------------AGGUGAU------------------------------------------------------- | 3 | novel | |||||
| seed | ---------------------------------------GACUUUA-------------------------------------------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------------------------------------------------UUCAUCC------------------------------ | 1 | novel | |||||
| seed | ------------------------------------------------------------------------------------UCAUCCA----------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------CUCAGGU---------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------GGGUGCU--------------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S2 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------TAGCAAGAAGCAGAATCTTTTCA--------------------------------- | 23 | - | - | - | - | 11 | - | |
| --------------------------------------------------------------------------------CTTTTCATCCATGTGTGAG--------------------- | 19 | 1 | 1 | 1 | - | 7 | - | |
| --------------------------------------------TAAGACACCGTCTCAGGTGA-------------------------------------------------------- | 20 | - | - | - | - | 8 | 1 | |
| --------------------------------------------------------TCAGGTGATAGCAAGAAGCAGA------------------------------------------ | 22 | - | - | - | - | 6 | - | |
| ---------------------------------------------------------CAGGTGATAGCAAGAAGCAGA------------------------------------------ | 21 | - | - | - | - | 3 | - | |
| --------------------------------------TGACTTTAAGACACCGTCTCAGGTGA-------------------------------------------------------- | 26 | - | - | - | - | 2 | - | |
| --------------------------------------------------------TCAGGTGATAGCAAGAAGCA-------------------------------------------- | 20 | - | - | - | 2 | - | - | |
| ------------------------------------------------------TCTCAGGTGATAGCAAGAAG---------------------------------------------- | 20 | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------------------CTTTTCATCCATGTGTGAGCATA----------------- | 23 | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------------------------TTCATCCATGTGTGAGCAT------------------ | 19 | - | - | - | - | 1 | - | |
| -------------------------------AGGGTGCTGACTTTAAGACACC------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------------------TTTCATCCATGTGTGAGCA------------------- | 19 | - | - | - | - | 1 | - | |
| rat | tgagacaaggggtcctggcatgtctggggctagggtgctgacttTAAGACACCGTCTCAGGTGATAGCAAGAAGCAGAATCTTTTCATCCATGTGTGAGcataggaatctcccattctca | |||||||
| ************************************************************************************************************************ | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | |||||||
| rat | .((((...(((((((((.((((..((((...(((((.(((.((((....((((......)))).......))))))).)))))....))))..))))....)))))...))))..)))). | 0.600 -35.50 | ||||||
| rat | chromosome:12:43049725:43049844:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
sblock5018 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.535 | no | no | 0.37/0.63 | 19/23/0.93 | 0.0 1.5 0.0 | 0.0 2.5 0.0 | 23 2 1 | 0 0 0 | 2 1 1 | 0 0 0 | 22 36 13 | -3 -18 11 | 5arm_loop 5arm_loop_3arm 3arm | 2 2 3 | nd nd nd | 0.52 0.52 0.42 | 4 7 4 | 29 | 3 | 17 | 13 |
| reads | miRBase family seed | ||||
| seed | -----------------------ACCAGGA-------------------------------------------------------------- | 26 | novel | ||
| seed | -------------------------------------GAUUGAG------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------------UGAGAUA--------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------UGGGGUU------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ----------------------TACCAGGAAGAGCTTGATTGAGA----------------------------------------------- | 23 | 2 | - | 23 | |
| ----------------------TACCAGGAAGAGCTTGATTGAG------------------------------------------------ | 22 | - | - | 1 | |
| ------------------------------------------------------------TTGGGGTTGGCTTGTGCCC------------- | 19 | - | 1 | - | |
| ---------------------------------------TTGAGATAGACATTGGCTTCA-------------------------------- | 21 | - | - | 1 | |
| ------------------------------------TGATTGAGATAGACATTGG------------------------------------- | 19 | - | - | 1 | |
| rat | ccacgtcctggcagctgccttgTACCAGGAAGAGCTTGATTGAGAtagacattggcttcattggggttggcttgtgcccggtggtcagtgga | ||||
| ******************************************************************************************** | |||||
| rat | ((((..((.((((...(((.....((((...(((((....((.......))..)))))..))))....)))...)))).))......)))). | 0.910 -28.10 | |||
| rat | chromosome:17:17525186:17525277:-1 | intergenic |
sblock5029 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.535 | no | no | 0.37/0.63 | 19/23/0.93 | 0.0 1.5 0.0 | 0.0 2.5 0.0 | 23 2 1 | 0 0 0 | 2 1 1 | 0 0 0 | 22 36 13 | -3 -18 11 | 5arm_loop 5arm_loop_3arm 3arm | 2 2 3 | nd nd nd | 0.52 0.52 0.42 | 4 7 4 | 29 | 3 | 17 | 13 |
| reads | miRBase family seed | ||||
| seed | -----------------------ACCAGGA-------------------------------------------------------------- | 26 | novel | ||
| seed | -------------------------------------GAUUGAG------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------------UGAGAUA--------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------UGGGGUU------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ----------------------TACCAGGAAGAGCTTGATTGAGA----------------------------------------------- | 23 | 2 | - | 23 | |
| ----------------------TACCAGGAAGAGCTTGATTGAG------------------------------------------------ | 22 | - | - | 1 | |
| ------------------------------------------------------------TTGGGGTTGGCTTGTGCCC------------- | 19 | - | 1 | - | |
| ---------------------------------------TTGAGATAGACATTGGCTTCA-------------------------------- | 21 | - | - | 1 | |
| ------------------------------------TGATTGAGATAGACATTGG------------------------------------- | 19 | - | - | 1 | |
| rat | ccacgtcctggcagctgccttgTACCAGGAAGAGCTTGATTGAGAtagacattggcttcattggggttggcttgtgcccggtggtcagtgga | ||||
| ******************************************************************************************** | |||||
| rat | ((((..((.((((...(((.....((((...(((((....((.......))..)))))..))))....)))...)))).))......)))). | 0.910 -28.10 | |||
| rat | chromosome:17:17534137:17534228:-1 | intergenic |
sblock6758 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.346 | no | no | 0.47/0.71 | 18/25/0.82 | 0.0 0.0 0.0 0.0 0.0 | 1.4 0.0 0.7 1.0 0.0 | 5 1 3 8 1 | 0 0 0 0 0 | 2 1 2 2 1 | 0 0 0 0 0 | 10 24 29 34 3 | 7 -1 -7 -16 18 | 5arm 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.38 0.47 0.50 0.46 0.52 | 4 4 4 4 6 | 22 | 4 | 13 | 9 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------GAAGUUG---------------------------------------------- | 11 | novel | |||
| seed | -----------CCCAGGA---------------------------------------------------------------------- | 5 | novel | |||
| seed | ------------------------------AACCUGA--------------------------------------------------- | 3 | novel | |||
| seed | -----------------------------------------GGCCUUA---------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------CCAUUCU---------------- | 1 | novel | |||
| seed | -------------------------UGCAGAA-------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| ----------------------------------TGAAGTTGGCCTTAGCGAAG---------------------------------- | 20 | - | 1 | 6 | - | |
| ----------TCCCAGGACGCGGCGTGCAGAACC------------------------------------------------------ | 24 | - | - | 2 | - | |
| ----------------------------------TGAAGTTGGCCTTAGCGAAGCGTG------------------------------ | 24 | - | - | 2 | - | |
| ----------TCCCAGGACGCGGCGTGCAGA--------------------------------------------------------- | 21 | - | - | 1 | 1 | |
| -----------------------------GAACCTGAAGTTGGCCTTAG--------------------------------------- | 20 | 2 | - | - | - | |
| ------------------------GTGCAGAACCTGAAGTTGG--------------------------------------------- | 19 | - | - | 1 | - | |
| ----------------------------------TGAAGTTGGCCTTAGCGAA----------------------------------- | 19 | - | - | 1 | - | |
| ----------------------------------TGAAGTTGGCCTTAGCGAAGCG-------------------------------- | 22 | - | - | 1 | - | |
| -----------------------------GAACCTGAAGTTGGCCTT----------------------------------------- | 18 | - | - | 1 | - | |
| ----------------------------------------TGGCCTTAGCGAAGCGTGCA---------------------------- | 20 | - | - | 1 | - | |
| ----------------------------------------------------------------TCCATTCTGTCCACTGCCCTC--- | 21 | - | - | 1 | - | |
| ----------TCCCAGGACGCGGCGTGCAGAACCT----------------------------------------------------- | 25 | - | - | 1 | - | |
| rat | ggaggggccaTCCCAGGACGCGGCGTGCAGAACCTGAAGTTGGCCTTAGCGAAGCGTGcacgcctccattctgtccactgccctcccg | |||||
| **************************************************************************************** | ||||||
| rat | ((..((((.....(((((...((((((((....((...((((....))))..))..))))))))....)))))......))))..)). | 0.690 -32.10 | ||||
| rat | chromosome:20:5522130:5522217:-1 | intergenic |
sblock8201 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.298 | no | no | 0.32/0.52 | 19/21/0.80 | 0.0 0.0 | 0.0 0.0 | 7 1 | 0 0 | 2 1 | 0 0 | 22 16 | -3 3 | 5arm_loop 3arm | 1 1 | nd nd | 0.52 0.53 | 4 3 | 10 | 2 | 6 | 4 |
| reads | miRBase family seed | |||
| seed | -----------------------CGGACAU-------------------------------------------------------------- | 8 | novel | |
| seed | --------------------------ACAUGAU----------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------AAGAAUU--------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| ----------------------TCGGACATGATCAGGGAGTCT------------------------------------------------- | 21 | 1 | 7 | |
| ---------------------------------------------------------TAAGAATTTGGATGAACAC---------------- | 19 | - | 1 | |
| -------------------------GACATGATCAGGGAGTCTA------------------------------------------------ | 19 | - | 1 | |
| rat | tagtgatttcaggacctcagtaTCGGACATGATCAGGGAGTCTatatttgccttctctaagaatttggatgaacacaaggtcttagtcctaa | |||
| ******************************************************************************************** | ||||
| rat | (((.((((..(((((((..((.(((..((...((..((((..............))))..))...))..)))))...)))))))))))))). | 0.940 -19.74 | ||
| rat | chromosome:3:140165219:140165310:1 | intergenic |
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