other hairpins
novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH (10 loci)
novel_cloningOK_multiarm_loopOverlap (10 loci)
block988449 [novel_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.125 | no | no | 0.42/0.50 | 18/26/0.77 | 0.0 0.0 | 0.0 0.0 | 16 2 | 0 0 | 6 1 | 0 0 | 42 18 | -16 0 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.38 0.25 | 4 2 | 31 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------------CUCACGC------------------------------------------- | 23 | novel | |||||
| seed | ----------------------------------------UAUCUCA---------------------------------------------- | 4 | novel | |||||
| seed | ----------------------------------------------------GACUUGA---------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------AUCUCAC--------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------CACGCAU----------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T4S2 | T5S1 | |||
| ------------------------------------------TCTCACGCATGACTTGAACTC------------------------------ | 21 | 3 | 1 | - | 1 | 1 | 16 | |
| ---------------------------------------TTATCTCACGCATGACTTGAACTCCA---------------------------- | 26 | - | 1 | 1 | - | - | 2 | |
| ---------------------------------------------------TGACTTGAACTCCATTCCCTCCCA------------------ | 24 | - | - | - | - | - | 2 | |
| ------------------------------------------TCTCACGCATGACTTGAA--------------------------------- | 18 | 1 | - | - | - | - | - | |
| ----------------------------------------TATCTCACGCATGACTTGAACTCCA---------------------------- | 25 | - | - | - | - | - | 1 | |
| --------------------------------------------TCACGCATGACTTGAACTC------------------------------ | 19 | - | - | - | - | - | 1 | |
| rat | cagaaaagaggcaaagaaaacatgtagggagaggcagcattaTCTCACGCATGACTTGAACTCcattccctcccattccctcctctgtactga | |||||||
| ********************************************************************************************* | ||||||||
| rat | (((...(((((....((....(((.((((((.((.((..(((..(((....)))..))).)))).))))))..)))))...)))))...))). | 0.990 -20.50 | ||||||
| rat | chromosome:1:102762119:102762211:1 | intergenic |
block1061054 [novel_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.724 | no | no | 0.32/0.39 | 19/24/0.82 | 0.0 0.3 | 0.0 0.0 | 1 16 | 0 0 | 1 3 | 0 0 | 8 19 | -2 -14 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.22 0.39 | 3 8 | 28 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------GCAUUUC--------------------------------------------- | 16 | novel | |||
| seed | ---------------------CAUUUCU-------------------------------------------- | 5 | novel | |||
| seed | --------------------------CUGAAAA--------------------------------------- | 3 | novel | |||
| seed | ----------------------------GAAAACA------------------------------------- | 2 | novel | |||
| seed | ---------AGCUUUU-------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------AAAACAA------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| -------------------TGCATTTCTGAAAACAACTAGGGA----------------------------- | 24 | 2 | 2 | 11 | - | |
| --------------------GCATTTCTGAAAACAACTAGGGA----------------------------- | 23 | - | - | 5 | - | |
| -------------------------TCTGAAAACAACTAGGGAT---------------------------- | 19 | - | - | 3 | - | |
| ---------------------------TGAAAACAACTAGGGATACTTG----------------------- | 22 | - | - | 1 | - | |
| -------------------TGCATTTCTGAAAACAACT---------------------------------- | 19 | - | - | 1 | - | |
| ---------------------------TGAAAACAACTAGGGATACT------------------------- | 20 | - | - | 1 | - | |
| --------TAGCTTTTTCCTGCATTTCTGAA----------------------------------------- | 23 | - | - | - | 1 | |
| ----------------------------GAAAACAACTAGGGATACT------------------------- | 19 | 1 | - | - | - | |
| rat | ccagtctgtagctttttccTGCATTTCTGAAAACAACTAGGGAtacttgagagggaatgaggcctagtcctg | |||||
| ************************************************************************ | ||||||
| rat | .(((.(((..((((((((((.((((((((........))))))....))...))))).))))).)))..))) | 0.640 -13.10 | ||||
| rat | chromosome:20:5526253:5526324:-1 | intergenic |
block2644946 [novel_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.474 | no | no | 0.32/0.42 | 18/24/0.78 | 0.0 0.9 1.0 | 0.0 0.0 0.7 | 1 13 3 | 0 0 0 | 1 4 2 | 0 0 0 | 36 17 9 | -13 -5 6 | 5arm_loop_3arm 3arm_loop 3arm | 2 2 2 | nd nd nd | 0.32 0.30 0.37 | 5 3 4 | 23 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------CACUUCU-------------------------------- | 9 | novel | |||||
| seed | -------------------------------------------ACACUUC--------------------------------- | 7 | novel | |||||
| seed | -----------------------------------------------UUCUAAG----------------------------- | 3 | novel | |||||
| seed | ------------------------------------------------------CAUUUCA---------------------- | 2 | novel | |||||
| seed | -------------------------------------GGCAAAA--------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------------UUCACAA------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------ACACTTCTAAGCATTTCACAAAG----------------- | 23 | - | - | - | 1 | 7 | 1 | |
| ------------------------------------------AACACTTCTAAGCATTTCACAAAG----------------- | 24 | - | 2 | - | - | 3 | - | |
| ----------------------------------------------CTTCTAAGCATTTCACAAAG----------------- | 20 | - | - | - | - | 3 | - | |
| -----------------------------------------------------GCATTTCACAAAGCGTCAA----------- | 19 | 2 | - | - | - | - | - | |
| --------------------------------------------------------TTTCACAAAGCGTCAAAC--------- | 18 | - | - | 1 | - | - | - | |
| ------------------------------------TGGCAAAACACTTCTAAGC---------------------------- | 19 | - | - | - | - | - | 1 | |
| ------------------------------------------AACACTTCTAAGCATTTCACA-------------------- | 21 | - | - | - | 1 | - | - | |
| ------------------------------------------AACACTTCTAAGCATTTCA---------------------- | 19 | - | - | - | 1 | - | - | |
| rat | tgtacttagttaaatttgaagatattgtctgtgacttggcaaAACACTTCTAAGCATTTCACAAAGcgtcaaacagctgtata | |||||||
| *********************************************************************************** | ||||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>................................... | ENSRNOT00000047326 ENSRNOG00000037286 LOC367336 | |||||||
| rat | (((((..((((...(((((.....((((..(((.(((((.((.....))))))))))...))))....))))).))))))))) | 0.760 -12.10 | ||||||
| rat | chromosome:9:105316207:105316289:1 | Same_strand|Boundary_non-coding|ENSRNOT00000047326|ENSRNOG00000037286 ## ENSRNOG00000037286|protein_coding|LOC367336| |
block1973153 [novel_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.225 | no | no | 0.35/0.42 | 19/24/0.94 | 0.0 0.0 0.0 0.3 | 0.0 0.0 0.0 0.0 | 2 1 3 10 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 14 23 27 38 | 7 0 -9 -17 | 5arm 5arm 5arm_loop_3arm 5arm_loop_3arm | 2 2 2 2 | nd nd nd nd | 0.33 0.26 0.42 0.43 | 3 3 6 6 | 16 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------UGAUGGU------------------------------------ | 7 | novel | |
| seed | ----------------------------------------GAUGGUU----------------------------------- | 3 | novel | |
| seed | ----------------------------AGCAACA----------------------------------------------- | 3 | novel | |
| seed | ---------------GGUAGAA------------------------------------------------------------ | 2 | novel | |
| seed | ------------------------AGGUAGC--------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------------------------GTGATGGTTTTCATGAAACTG----------------------- | 21 | - | 7 | |
| ---------------------------TAGCAACATTGGTGATGGTTTTCA------------------------------- | 24 | - | 3 | |
| ---------------------------------------TGATGGTTTTCATGAAACTG----------------------- | 20 | - | 3 | |
| --------------TGGTAGAAATAGGTAGCAACA----------------------------------------------- | 21 | 2 | - | |
| -----------------------TAGGTAGCAACATTGGTGA---------------------------------------- | 19 | - | 1 | |
| rat | gcagagcgtctttctggtagaaataggTAGCAACATTGGTGATGGTTTTCATGAAACTGctgcttgctccatgatgaatttg | |||
| ********************************************************************************** | ||||
| rat | .((((.((((....(((.((...(((((((((...((.((((......)))).))..)))))))))))))).))))..)))) | 0.820 -20.00 | ||
| rat | chromosome:6:122565311:122565392:-1 | intergenic |
block234766 [novel_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.254 | no | no | 0.58/0.70 | 19/22/0.91 | 0.9 0.7 1.3 | 0.0 0.0 0.3 | 14 3 3 | 0 0 0 | 2 1 2 | 0 0 0 | 41 48 26 | -8 -15 -1 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.40 0.30 0.18 | 4 3 2 | 23 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------AGAAUCC------------------------------------------------------- | 8 | novel | ||
| seed | ------------------------------------------AGAGAAU--------------------------------------------------------- | 7 | novel | ||
| seed | --------------------------------------------------------------GCCUACA------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------AGGCCGU------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------------------GAGAAUC-------------------------------------------------------- | 2 | novel | ||
| seed | -------------------------------------------------CCAGGCC-------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------GCCUGCC----------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| -------------------------------------------GAGAATCCAGGCCGTGCCTG------------------------------------------- | 20 | - | - | 8 | |
| -----------------------------------------TAGAGAATCCAGGCCGTGCCTG------------------------------------------- | 22 | 1 | - | 6 | |
| -------------------------------------------------------------TGCCTACAGCCTCAACTCG-------------------------- | 19 | - | - | 2 | |
| ------------------------------------------AGAGAATCCAGGCCGTGCCTG------------------------------------------- | 21 | - | - | 2 | |
| --------------------------------------------------CAGGCCGTGCCTGCCTACAG------------------------------------ | 20 | - | - | 2 | |
| ---------------------------------------------------------TGCCTGCCTACAGCCTCAACTC--------------------------- | 22 | - | 1 | - | |
| ------------------------------------------------TCCAGGCCGTGCCTGCCTACAG------------------------------------ | 22 | - | - | 1 | |
| rat | gactggctgtttctctggagtgggtaagggagtgagaggctTAGAGAATCCAGGCCGTGCCTGcctacagcctcaactcgcctgtgttggtggccttgcagctgtc | ||||
| ********************************************************************************************************** | |||||
| rat | (((.((((((.((.((((..(((((....((((..((((((...((....(((((...))))).))..)))))).)))))))))..)))).))....))))))))) | 0.510 -36.70 | |||
| rat | chromosome:12:44300609:44300714:1 | intergenic |
block1067465 [novel_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.027 | no | no | 0.32/0.53 | 18/25/0.71 | 0.8 0.5 0.2 | 0.6 1.3 1.5 | 5 19 4 | 0 0 0 | 1 4 1 | 0 0 0 | 28 17 2 | -12 -20 4 | 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.37 0.35 0.16 | 5 4 2 | 34 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------UUGGCAA------------------------------- | 14 | miR-182 | |||
| seed | -------------------------------------UGGCAAA------------------------------ | 7 | novel | |||
| seed | --------------------------------------GGCAAAG----------------------------- | 4 | novel | |||
| seed | -----------------------------GGGACCU-------------------------------------- | 3 | novel | |||
| seed | ------------------------------------------------AAAACAG------------------- | 3 | novel | |||
| seed | ------------------------------GGACCUU------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------UAAAACA-------------------- | 1 | novel | |||
| seed | --------------------------------ACCUUUG----------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| -----------------------------------TTTGGCAAAGCTTAAAACAG------------------- | 20 | 1 | - | - | 6 | |
| -----------------------------------TTTGGCAAAGCTTAAAACAGTG----------------- | 22 | - | 1 | - | 5 | |
| ------------------------------------TTGGCAAAGCTTAAAACAGTG----------------- | 21 | - | - | - | 4 | |
| -------------------------------------TGGCAAAGCTTAAAACAGTG----------------- | 20 | - | - | 1 | 2 | |
| ----------------------------TGGGACCTTTGGCAAAGCT--------------------------- | 19 | - | - | - | 3 | |
| -----------------------------------------------TAAAACAGTGCTCACCCACAC------ | 21 | - | - | - | 2 | |
| ------------------------------------TTGGCAAAGCTTAAAACA-------------------- | 18 | - | - | - | 2 | |
| -----------------------------------TTTGGCAAAGCTTAAAACA-------------------- | 19 | - | - | - | 1 | |
| -----------------------------------------------TAAAACAGTGCTCACCCACACTCTC-- | 25 | - | - | - | 1 | |
| ------------------------------------TTGGCAAAGCTTAAAACAG------------------- | 19 | 1 | - | - | - | |
| -----------------------------GGGACCTTTGGCAAAGCTT-------------------------- | 19 | - | - | - | 1 | |
| -------------------------------GACCTTTGGCAAAGCTTA------------------------- | 18 | - | - | - | 1 | |
| -------------------------------------TGGCAAAGCTTAAAACAGTGCTC-------------- | 23 | - | - | - | 1 | |
| ----------------------------------------------TTAAAACAGTGCTCACCCACACTC---- | 24 | - | - | - | 1 | |
| rat | gggattaagggtgtggggggtgtgtgtgTGGGACCTTTGGCAAAGCTTAAAACAGTGCTCACCCACACtctccc | |||||
| ************************************************************************** | ||||||
| rat | ((((....(((((((((((((((((...((((..(((.....)))))))..))).))))).))))))))))))) | 1.000 -27.90 | ||||
| rat | chromosome:20:13213431:13213504:-1 | intergenic |
block1093699 [novel_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.057 | no | no | 0.47/0.62 | 18/24/0.71 | 0.0 3.3 0.0 | 0.0 2.0 0.2 | 6 3 12 | 0 0 0 | 1 1 3 | 0 0 0 | 13 25 38 | 12 -5 -13 | 5arm 5arm_loop 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.30 0.33 0.45 | 3 4 7 | 34 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------GGCAUCA---------------------------------------------------- | 17 | novel | ||
| seed | --------------GGGAUAG----------------------------------------------------------------------------- | 7 | novel | ||
| seed | --------------------------------------------CAACGGC----------------------------------------------- | 2 | novel | ||
| seed | -------------------AGGAGAG------------------------------------------------------------------------ | 2 | novel | ||
| seed | -------CGUGCUU------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | --------------------------CCAGAAC----------------------------------------------------------------- | 1 | novel | ||
| seed | --------GUGCUUG----------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------AACGCUC------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------CGCUCAU----------------------------------------------------------- | 1 | novel | ||
| seed | ----------GCUUGGG--------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| --------------------------------------TGGCATCAACGGCAGAAGCT---------------------------------------- | 20 | 2 | - | 9 | |
| -------------TGGGATAGGAGAGCCAGAAC----------------------------------------------------------------- | 20 | - | - | 6 | |
| --------------------------------------TGGCATCAACGGCAGAAGC----------------------------------------- | 19 | 1 | - | 3 | |
| -------------------------------------------TCAACGGCAGAAGCTATGA------------------------------------ | 19 | - | 1 | 1 | |
| -------------------------GCCAGAACGCTCATGGCATCA---------------------------------------------------- | 21 | - | - | 1 | |
| -------CGTGCTTGGGATAGGAGAGCCA--------------------------------------------------------------------- | 22 | - | - | 1 | |
| -----------------------------GAACGCTCATGGCATCAAC-------------------------------------------------- | 19 | - | - | 1 | |
| --------------------------------------TGGCATCAACGGCAGAAGCTA--------------------------------------- | 21 | - | - | 1 | |
| ------------------TAGGAGAGCCAGAACGCT-------------------------------------------------------------- | 18 | - | - | 1 | |
| ------CCGTGCTTGGGATAGGAGAGCCAG-------------------------------------------------------------------- | 24 | - | - | 1 | |
| ---------TGCTTGGGATAGGAGAGCCAGA------------------------------------------------------------------- | 22 | - | - | 1 | |
| --------------------------------------TGGCATCAACGGCAGAAG------------------------------------------ | 18 | - | - | 1 | |
| -------------------------------ACGCTCATGGCATCAACGG------------------------------------------------ | 19 | - | - | 1 | |
| ------------------TAGGAGAGCCAGAACGCTCA------------------------------------------------------------ | 20 | - | - | 1 | |
| -------------TGGGATAGGAGAGCCAGAACGC--------------------------------------------------------------- | 22 | - | - | 1 | |
| rat | gtgggaccgtgctTGGGATAGGAGAGCCAGAACgctcaTGGCATCAACGGCAGAAGCTatgattactttggtggcctctccgcctttcttggctccat | ||||
| ************************************************************************************************** | |||||
| rat | ((((..(((.....(((...(((((((((((....(((((((.((.......)).)))))))....)))))....)))))).)))....)))..)))) | 0.960 -35.80 | |||
| rat | chromosome:20:5545464:5545561:1 | intergenic |
block1499799 [novel_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.151 | no | no | 0.50/0.56 | 18/22/0.75 | 0.0 0.0 | 0.0 0.0 | 1 8 | 0 0 | 1 2 | 0 0 | 30 10 | -16 -1 | 5arm_loop_3arm 3arm_loop | 2 2 | nd nd | 0.44 0.27 | 5 3 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------GCCGUUU------------------------ | 9 | novel | |
| seed | --------------------------------------CCGUUUC----------------------- | 2 | novel | |
| seed | -------------------------------CUCCAUG------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------------TGCCGTTTCTTGTACAGTGGGA---------- | 22 | 1 | 8 | |
| -------------------------------------GCCGTTTCTTGTACAGTGG------------ | 19 | - | 2 | |
| ------------------------------GCTCCATGCCGTTTCTTG-------------------- | 18 | - | 1 | |
| rat | ggtgtctcttgggcatatgtgggaggacaggctccaTGCCGTTTCTTGTACAGTGGGAtcctgaccca | |||
| ******************************************************************** | ||||
| rat | ((.(((....((((((.((((.(((((..(((.....)))..))))).)))))))...))).))))). | 0.540 -21.90 | ||
| rat | chromosome:3:141755043:141755110:1 | intergenic |
block1499849 [novel_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.151 | no | no | 0.50/0.56 | 18/22/0.75 | 0.0 0.0 | 0.0 0.0 | 1 8 | 0 0 | 1 2 | 0 0 | 30 10 | -16 -1 | 5arm_loop_3arm 3arm_loop | 2 2 | nd nd | 0.44 0.27 | 5 3 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------GCCGUUU------------------------ | 9 | novel | |
| seed | --------------------------------------CCGUUUC----------------------- | 2 | novel | |
| seed | -------------------------------CUCCAUG------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------------TGCCGTTTCTTGTACAGTGGGA---------- | 22 | 1 | 8 | |
| -------------------------------------GCCGTTTCTTGTACAGTGG------------ | 19 | - | 2 | |
| ------------------------------GCTCCATGCCGTTTCTTG-------------------- | 18 | - | 1 | |
| rat | ggtgtctcttgggcatatgtgggaggacaggctccaTGCCGTTTCTTGTACAGTGGGAtcctgaccca | |||
| ******************************************************************** | ||||
| rat | ((.(((....((((((.((((.(((((..(((.....)))..))))).)))))))...))).))))). | 0.540 -21.90 | ||
| rat | chromosome:3:141756851:141756918:1 | intergenic |
sblock6741 [novel_cloningOK_multiarm_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.284 | no | no | 0.48/0.68 | 18/25/0.75 | 0.0 0.0 0.0 | 0.5 0.0 0.0 | 2 6 1 | 0 0 0 | 1 2 1 | 0 0 0 | 6 43 29 | 22 -4 8 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.26 0.55 0.32 | 2 7 4 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------GUGGAUU------------------------------------------------------- | 8 | novel | |
| seed | -------CCUCCAG------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ------------------------------------------------------------AGGCUGU------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------GGAUUUC----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| -----------------------------------------------TGTGGATTTCGACAGGCTGT------------------------------------------- | 20 | 1 | 6 | |
| -----------------------------------------------TGTGGATTTCGACAGGCTGTTTCCT-------------------------------------- | 25 | - | 1 | |
| -----------------------------------------------------------CAGGCTGTTTCCTGGGGTGGAG----------------------------- | 22 | - | 1 | |
| -------------------------------------------------TGGATTTCGACAGGCTGTTTCC--------------------------------------- | 22 | - | 1 | |
| ------GCCTCCAGCAGGTCGGTT-------------------------------------------------------------------------------------- | 18 | - | 1 | |
| ------GCCTCCAGCAGGTCGGTTG------------------------------------------------------------------------------------- | 19 | - | 1 | |
| rat | caaggtgcctccagcaggtcggttgcaagagaggaaaagccaacatcTGTGGATTTCGACAGGCTGTttcctggggtggagccgaagtgtgtccgggagctcataaatgg | |||
| ************************************************************************************************************** | ||||
| rat | ((..(((.((((.(((..((((((.((....((((((((((...(((....))).......)))).))))))....)).))))))..))).....))))..)))...)). | 0.870 -32.90 | ||
| rat | chromosome:20:5517795:5517904:-1 | intergenic |
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