other hairpins
novel_lenNOK_5varHIGH_loopOverlap_randfoldOK (10 loci)
novel_lenNOK_Multihit_5varHIGH_loopOverlap (10 loci)
block73281 [novel_lenNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.742 | no | no | 0.52/0.73 | 18/26/0.62 | 2.0 | 3.4 | 8 | 0 | 5 | 0 | 31 | -2 | 5arm_loop | 14 | nd | 0.26 | 1 | 8 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------CAACAAG------------------------------------------------------------------------------ | 4 | novel | ||||
| seed | ----------------------------------------CGCUCGA----------------------------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------ACAACAA------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ---------------------------------------GCGCUCG------------------------------------------------------------------------ | 1 | novel | ||||
| seed | -----------------------------------ACAAGCG---------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S2 | T3S1 | T3S2 | T4S2 | T5S2 | |||
| --------------------------------ACAACAAGCGCTCGACCATC------------------------------------------------------------------ | 20 | - | - | 2 | - | - | |
| ----------------------------------AACAAGCGCTCGACCATCACGTC------------------------------------------------------------- | 23 | - | - | - | - | 1 | |
| --------------------------------ACAACAAGCGCTCGACCAT------------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| --------------------------------------AGCGCTCGACCATCACGT-------------------------------------------------------------- | 18 | - | - | 1 | - | - | |
| --------------------------------ACAACAAGCGCTCGACCATCACGTCC------------------------------------------------------------ | 26 | 1 | - | - | - | - | |
| ---------------------------------------GCGCTCGACCATCACGTCCCGC--------------------------------------------------------- | 22 | - | 1 | - | - | - | |
| -------------------------------TACAACAAGCGCTCGACCATCAC---------------------------------------------------------------- | 23 | - | - | 1 | - | - | |
| rat | catcgccagcgaggcctcccgcctggctcatTACAACAAGCGCTCGACCATCACGTCCCGCgaggtgcagacggccgtgcgcctgctgctgcctggggagctggccaagcatgccgtg | ||||||
| ********************************************************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000033866 ENSRNOG00000022983 Trim17 | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048642 ENSRNOG00000022983 Trim17 | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000033894 ENSRNOG00000022983 Trim17 | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058453 ENSRNOG00000022983 Trim17 | ||||||
| rat | (((.((..((..((((..((.((.(((......((.((.((((.((.((.((..((.((....)).)).)).)).)).)))).)).))..))).))))....))))..))..)).))) | 0.440 -43.20 | |||||
| rat | chromosome:10:45238371:45238488:1 | Same_strand|Intronic_coding|ENSRNOT00000058453|ENSRNOG00000022983 ## Same_strand|Boundary_non-coding|ENSRNOT00000003885|ENSRNOG00000022983 ## ENSRNOG00000022983|protein_coding|Trim17|Tripartite motif-containing protein 17 (Testis RING finger protein). [Source:UniProtKB/Swiss-Prot;Acc:Q9WV59] |
block360205 [novel_lenNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.094 | no | no | 0.39/0.62 | 18/21/0.60 | 2.0 0.0 | 3.3 0.0 | 3 2 | 0 0 | 3 1 | 0 0 | 31 25 | -2 8 | 3arm 3arm | 15 15 | nd nd | 0.16 0.43 | 2 8 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------GGAUUCC-------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------AACAAAA---------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------CAAAAUG-------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------UCAACAA------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T3S2 | |||
| ------------------------------------------------------------------------TGGATTCCACCGAGCCACCAC------------------------- | 21 | 2 | - | - | |
| ----------------------------------------------------------------CAACAAAATGGATTCCACC----------------------------------- | 19 | - | - | 1 | |
| ------------------------------------------------------------------ACAAAATGGATTCCACCGAGC------------------------------- | 21 | 1 | - | - | |
| --------------------------------------------------------------GTCAACAAAATGGATTCC-------------------------------------- | 18 | - | 1 | - | |
| rat | ggcagacccatgagcatgctcttctggcttacaccttcggtgtgaaacagctaattgttgatGTCAACAAAATGGATTCCACCGAGCCACCACacagaagagatacaaggatatcgtc | ||||
| ********************************************************************************************************************** | |||||
| rat | (((.((.((.((......((((((((.........(((((((.(((....(((.((((((....))))))..))).))))))))))........))))))))...)).))...))))) | 0.780 -30.83 | |||
| rat | chromosome:14:67223784:67223901:-1 | intergenic |
block435143 [novel_lenNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.084 | no | no | 0.45/0.63 | 19/24/0.67 | 2.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 7 0 | -22 2 | 3arm_loop 3arm | 15 20 | nd nd | 0.40 0.28 | 5 2 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------CCAGCUA----------- | 1 | novel | ||
| seed | ----------------------GCCAAAA----------------------- | 1 | novel | ||
| seed | --------------------------AAAGACA------------------- | 1 | miR-743b | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S1 | |||
| -------------------------AAAAGACATCCAGCTAGCAC------- | 20 | - | - | 1 | |
| ---------------------TGCCAAAAGACATCCAGCTAGCAC------- | 24 | - | 1 | - | |
| ---------------------------------TCCAGCTAGCACGCCGCAT | 19 | 1 | - | - | |
| rat | atgccaaacgtgaaatagttaTGCCAAAAGACATCCAGCTAGCACGCCGCAT | ||||
| **************************************************** | |||||
| rat | ((((....((((...((((((((........)))..))))).))))..)))) | 1.000 -10.00 | |||
| rat | chromosome:15:21843148:21843199:-1 | intergenic |
block842900 [novel_lenNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.259 | no | no | 0.47/0.58 | 19/22/0.40 | 2.0 | 1.2 | 5 | 0 | 2 | 0 | 28 | -3 | 3arm_loop | 29 | nd | 0.16 | 1 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---------------------------------------------------------ACUGUCU------------------------------------------ | 2 | novel | |
| seed | --------------------------------------------------------CACUGUC------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --------------------------------------------------------CACTGTCTCAGACCCTCCA------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------CACTGTCTCAGACCCTCCAA------------------------------ | 20 | 1 | - | |
| -------------------------------------------------------CCACTGTCTCAGACCCTCCAAA----------------------------- | 22 | - | 1 | |
| rat | gacctccactgtcaaagcaccaatgttgtggtagggcgtctgtggtcaggcaactCCACTGTCTCAGACCCTCCAAATtgcaagacctttatgggcactggaagtt | |||
| ********************************************************************************************************** | ||||
| rat | (((.((((.((((..........(((..(((.((((..((((.((.(((.........))))).)))))))))))....)))...........)))).)))).))) | 0.720 -29.40 | ||
| rat | chromosome:1:49004641:49004746:-1 | intergenic |
block844862 [novel_lenNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.491 | no | no | 0.54/0.58 | 19/24/0.50 | 1.8 | 0.0 | 6 | 0 | 2 | 0 | 6 | -4 | 3arm | 27 | nd | 0.15 | 2 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------CUCACAG----------------- | 3 | novel | |
| seed | --------------------------------------CCAUUCU---------------------- | 2 | novel | |
| seed | ------------------------------------------UCUCACA------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------------------TCTCACAGGACCTCCAGTG------ | 19 | - | 3 | |
| -------------------------------------TCCATTCTCACAGGACCTCCAGTG------ | 24 | 1 | 1 | |
| -----------------------------------------TTCTCACAGGACCTCCAGTG------ | 20 | - | 1 | |
| rat | ttgctgtacttccagtgtcacagctgttataagaaccTCCATTCTCACAGGACCTCCAGTGcgtcag | |||
| ******************************************************************* | ||||
| rat | .((.((((((...((.(((....((((....((((......)))).)))))))))..)))))).)). | 0.610 -11.40 | ||
| rat | chromosome:1:50354926:50354992:-1 | intergenic |
block845566 [novel_lenNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.183 | no | no | 0.42/0.50 | 18/26/0.25 | 1.5 0.5 | 1.5 3.0 | 2 2 | 0 0 | 1 1 | 0 0 | 4 15 | 5 -8 | 5arm 5arm_loop | 1 20 | nd nd | 0.28 0.37 | 2 3 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------CACAUGA------------------------------------------------------------- | 1 | novel |
| seed | ----------------CUCCACU----------------------------------------------------- | 1 | novel |
| seed | -----UGUCACA---------------------------------------------------------------- | 1 | novel |
| seed | -----------------UCCACUU---------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------CTCCACTTTTGTAGGACCT----------------------------------------- | 19 | 1 | |
| ----TTGTCACATGACCTCCACTTTTGT------------------------------------------------ | 24 | 1 | |
| -------TCACATGACCTCCACTTT--------------------------------------------------- | 18 | 1 | |
| ---------------CCTCCACTTTTGTAGGACCTTCACTG----------------------------------- | 26 | 1 | |
| rat | tccaTTGTCACATGACCTCCACTTTTGTAGGACCTTCACTGtccaggcaaactgcaggatctccagtgtctcagga | ||
| **************************************************************************** | |||
| rat | (((.....(((..(((((.((..(((((.((((.......))))..))))).)).))).))....))).....))) | 0.430 -15.70 |
| rat | chromosome:1:50783183:50783258:-1 | intergenic |
block959503 [novel_lenNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.101 | no | no | 0.47/0.58 | 19/22/0.40 | 2.0 | 1.2 | 5 | 0 | 2 | 0 | 28 | -3 | 3arm_loop | 29 | nd | 0.26 | 2 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---------------------------------------------------------ACUGUCU------------------------------------------ | 2 | novel | |
| seed | --------------------------------------------------------CACUGUC------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --------------------------------------------------------CACTGTCTCAGACCCTCCA------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------CACTGTCTCAGACCCTCCAA------------------------------ | 20 | 1 | - | |
| -------------------------------------------------------CCACTGTCTCAGACCCTCCAAA----------------------------- | 22 | - | 1 | |
| rat | gatctccactctcaccggaccaatattgcagtaggacgtctgcggtcaggcaactCCACTGTCTCAGACCCTCCAAATtgcaagacctttacgggcactggaagtt | |||
| ********************************************************************************************************** | ||||
| rat | ((..((((......(((........(((((((.(((.(((((.((.(((.........))).)))))))..)))..)))))))........)))....))))..)) | 0.980 -28.69 | ||
| rat | chromosome:1:47969442:47969547:1 | intergenic |
block1947087 [novel_lenNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.148 | no | no | 0.50/0.57 | 23/26/0.50 | 1.5 | 0.0 | 2 | 0 | 2 | 0 | 21 | -2 | 3arm | 11 | nd | 0.30 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------CCACUGU------------------------------------ | 1 | novel | |
| seed | --------------------------------------------------------AUCCCAC--------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| -------------------------------------------------------AATCCCACTGTCTCCAAGACACACTG--------------------- | 26 | - | 1 | |
| ----------------------------------------------------------CCCACTGTCTCCAAGACACACTG--------------------- | 23 | 1 | - | |
| rat | cacagctctaccctgctaagtggtacttgtgtagtggtaacctggttagtgtgacAATCCCACTGTCTCCAAGACACACTGccaactgcgtgcaagctttga | |||
| ****************************************************************************************************** | ||||
| rat | ((.((((......(((...(((((...((.((((((((....(((.(((((.((...)).)))))...)))..)).)))))))))))))..))))))).)). | 0.610 -27.40 | ||
| rat | chromosome:6:78686613:78686714:-1 | intergenic |
block1985395 [novel_lenNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.135 | no | no | 0.57/0.68 | 19/21/0.33 | 2.3 | 1.0 | 3 | 0 | 1 | 0 | 9 | -5 | 3arm | 13 | nd | 0.16 | 2 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------AGAAGGG------------------------- | 1 | novel |
| seed | -----------------------------------AAGGGUC----------------------- | 1 | novel |
| seed | --------------------------------------GGUCUGG-------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ----------------------------------GAAGGGTCTGGAGTGGGTC------------ | 19 | 1 | |
| --------------------------------AAGAAGGGTCTGGAGTGGGTC------------ | 21 | 1 | |
| -------------------------------------GGGTCTGGAGTGGGTCGCA--------- | 19 | 1 | |
| rat | actattacatggcctgggtctgccaggctccaAAGAAGGGTCTGGAGTGGGTCGCAacaattagt | ||
| ***************************************************************** | |||
| rat | ((((.....((((((....((.((((((.((......)))))))))).)))))).......)))) | 0.980 -19.30 |
| rat | chromosome:6:139353998:139354062:-1 | intergenic |
block2680582 [novel_lenNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.064 | no | no | 0.42/0.47 | 19/23/0.33 | 2.3 | 3.7 | 3 | 0 | 3 | 0 | 20 | -18 | 3arm | 136 | nd | 0.26 | 2 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------CAUCCAU-------------------------------------- | 2 | novel | ||
| seed | --------------------------------GACAACU------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T3S1 | T3S2 | |||
| ------------------------TCATCCATGACAACTTTGGCATC----------------------- | 23 | 1 | - | - | |
| -------------------------------TGACAACTTTGGCATCGTG-------------------- | 19 | - | 1 | - | |
| ------------------------TCATCCATGACAACTTTGG--------------------------- | 19 | - | - | 1 | |
| rat | aactgcttagccccccggccaaggTCATCCATGACAACTTTGGCATCGTGgaagggctcatgaccacagt | ||||
| ********************************************************************** | |||||
| rat | .((((...(((((((((((((((((..((...))..))))))))..)).))..)))))........)))) | 0.970 -21.30 | |||
| rat | chromosome:X:27911713:27911782:-1 | intergenic |
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