other hairpins
novel_lenNOK_Multihit_5varHIGH_loopOverlap (10 loci)
novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH (10 loci)
block693724 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.871 | no | no | 0.56/0.63 | 18/21/0.32 | 1.3 | 1.0 | 19 | 0 | 6 | 0 | 9 | 7 | 3arm | 1 | nd | 0.32 | 3 | 19 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------CAGGUGC----------------------- | 7 | novel | |||||
| seed | ---------------------------------------------------------AGGUGCU---------------------- | 6 | novel | |||||
| seed | ----------------------------------------------------------GGUGCUG--------------------- | 2 | novel | |||||
| seed | ------------------------------------------------------------UGCUGCA------------------- | 2 | novel | |||||
| seed | -----------------------------------------------------------GUGCUGC-------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------UGACAGG-------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------ACAGGTGCTGCATGGCTGTC----------- | 20 | - | 2 | 1 | 1 | - | - | |
| --------------------------------------------------------CAGGTGCTGCATGGCTGTC----------- | 19 | 1 | 2 | - | - | - | - | |
| ---------------------------------------------------------AGGTGCTGCATGGCTGTC----------- | 18 | - | 1 | - | - | 1 | - | |
| -------------------------------------------------------ACAGGTGCTGCATGGCTG------------- | 18 | - | 1 | - | - | - | 1 | |
| -----------------------------------------------------------GTGCTGCATGGCTGTCAT--------- | 18 | - | 1 | - | - | - | 1 | |
| ----------------------------------------------------GTGACAGGTGCTGCATGGC--------------- | 19 | - | - | - | - | - | 1 | |
| --------------------------------------------------------CAGGTGCTGCATGGCTGTCA---------- | 20 | 1 | - | - | - | - | - | |
| ----------------------------------------------------------GGTGCTGCATGGCTGTCAT--------- | 19 | - | 1 | - | - | - | - | |
| --------------------------------------------------------CAGGTGCTGCATGGCTGTCAT--------- | 21 | - | - | - | - | 1 | - | |
| --------------------------------------------------------CAGGTGCTGCATGGCTGT------------ | 18 | - | 1 | - | - | - | - | |
| -------------------------------------------------------ACAGGTGCTGCATGGCTGT------------ | 19 | - | 1 | - | - | - | - | |
| rat | actgtaatgaaaatattgtcttgctgaattaaacactttggaaccccttctaGTGACAGGTGCTGCATGGCTGTCATtcccctagt | |||||||
| ************************************************************************************** | ||||||||
| rat | ((((.(((((.......(((.(((...(((...((((..((....))....))))...)))...))).)))..)))))....)))) | 0.920 -12.80 | ||||||
| rat | chromosome:18:25637124:25637209:-1 | intergenic |
block1008569 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.146 | no | no | 0.60/0.62 | 18/21/0.67 | 1.2 | 0.0 | 12 | 0 | 6 | 0 | 14 | 1 | 5arm | 1 | nd | 0.33 | 3 | 12 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ---------------UGCUCUA-------------------------------------------------------- | 5 | novel | |||||
| seed | ------------------UCUAGGC----------------------------------------------------- | 4 | novel | |||||
| seed | ----------------GCUCUAG------------------------------------------------------- | 3 | novel | |||||
| len | cloning frequencies | |||||||
| T2S1 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------GTGCTCTAGGCACTGGGACAG------------------------------------------- | 21 | - | - | 3 | - | 1 | 1 | |
| -----------------CTCTAGGCACTGGGACAG------------------------------------------- | 18 | 1 | 1 | - | 1 | 1 | - | |
| ---------------TGCTCTAGGCACTGGGACAG------------------------------------------- | 20 | - | - | 3 | - | - | - | |
| rat | gtcaggattgggagGTGCTCTAGGCACTGGGACAGcacagcaaaacccagctggaggttttcacacagtactgtgaca | |||||||
| ****************************************************************************** | ||||||||
| rat | ((((((((((.((((..((((((...(((((...((...))....)))))))))))..))))...)))).)).)))). | 0.810 -23.60 | ||||||
| rat | chromosome:1:154990234:154990311:1 | intergenic |
block1440571 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.495 | no | no | 0.44/0.56 | 18/26/0.47 | 5.4 0.0 | 5.2 0.0 | 18 1 | 0 0 | 8 1 | 0 0 | 6 25 | 1 0 | 5arm 5arm | 1 1 | 39 35 | 0.32 0.44 | 3 2 | 19 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -------AUACUGG------------------------------------------------------------------------- | 4 | novel | |||||||
| seed | -------------------ACUACAC------------------------------------------------------------- | 3 | novel | |||||||
| seed | --------------------CUACACU------------------------------------------------------------ | 3 | novel | |||||||
| seed | --------------CUGUGAC------------------------------------------------------------------ | 2 | novel | |||||||
| seed | --------------------------UGACUUG------------------------------------------------------ | 1 | novel | |||||||
| seed | -----------UGGCUGU--------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ------------------GACUACA-------------------------------------------------------------- | 1 | novel | |||||||
| seed | ----------------------ACACUGA---------------------------------------------------------- | 1 | novel | |||||||
| seed | -----------------UGACUAC--------------------------------------------------------------- | 1 | novel | |||||||
| seed | ----------CUGGCUG---------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ---------------UGUGACU----------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| ------GATACTGGCTGTGACTAC--------------------------------------------------------------- | 18 | - | - | 1 | 1 | - | - | - | 1 | |
| -------------------ACTACACTGACTTGGACACT------------------------------------------------ | 20 | - | - | - | - | - | - | 3 | - | |
| ------------------GACTACACTGACTTGGACACT------------------------------------------------ | 21 | - | - | - | 1 | - | 1 | - | - | |
| -------------------------CTGACTTGGACACTTGGC-------------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | |
| -----------------TGACTACACTGACTTGGACAC------------------------------------------------- | 21 | - | - | - | 1 | - | - | - | - | |
| --------------CTGTGACTACACTGACTTG------------------------------------------------------ | 19 | 1 | - | - | - | - | - | - | - | |
| ----------------GTGACTACACTGACTTGGACACTTGG--------------------------------------------- | 26 | - | - | - | - | - | 1 | - | - | |
| ------------------GACTACACTGACTTGGACAC------------------------------------------------- | 20 | - | - | - | 1 | - | - | - | - | |
| ------GATACTGGCTGTGACTACACTG----------------------------------------------------------- | 22 | - | - | - | - | - | - | - | 1 | |
| -------------GCTGTGACTACACTGACTT------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | |
| -------------GCTGTGACTACACTGACTTGGACAC------------------------------------------------- | 25 | - | - | 1 | - | - | - | - | - | |
| ---------ACTGGCTGTGACTACACTGACT-------------------------------------------------------- | 22 | - | - | - | 1 | - | - | - | - | |
| ----------CTGGCTGTGACTACACTGA---------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | |
| ---------------------TACACTGACTTGGACACT------------------------------------------------ | 18 | - | - | - | - | - | - | - | 1 | |
| rat | gcgctcGATACTGGCTGTGACTACACTGACTTGGACACTTGGCcttttgcgggtttgagaggtaagcgtcgcggcctgcttccaggc | |||||||||
| *************************************************************************************** | ||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046815 ENSRNOG00000033117 | |||||||||
| ..........................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++ | ENSRNOT00000025067 ENSRNOG00000018294 Hspa5 | |||||||||
| rat | ((.((.((....(((((((((...(((..((..(((.((..((.....)))))))..)).)))....)))))))))....)).)))) | 0.840 -27.90 | ||||||||
| rat | chromosome:3:13783638:13783724:1 | Same_strand|Intronic_coding|ENSRNOT00000046815|ENSRNOG00000033117 ## Same_strand|Boundary_non-coding|ENSRNOT00000046927|ENSRNOG00000033117 ## ENSRNOG00000018294|protein_coding|Hspa5|78 kDa glucose-regulated protein precursor (GRP 78) (Heat shock 70 kDa protein 5) (Immunoglobulin heavy chain-binding protein) (BiP) (Steroidogenesis-activator polypeptide). [Source:UniProtKB/Swiss-Prot;Acc:P06761] ## ENSRNOG00000033117|protein_coding|| ## {SimpF: 1 Eponine,oe = 0.96 1 CpG} |
block2098013 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.479 | no | no | 0.58/0.70 | 18/22/0.18 | 0.2 1.4 0.5 | 1.0 1.0 2.5 | 4 5 2 | 0 0 0 | 4 3 2 | 0 0 0 | 26 16 6 | 1 7 18 | 3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.37 0.35 0.33 | 3 3 3 | 11 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ---------------------------------------------------UCUGUGA-------------------------------------- | 3 | novel | ||||||
| seed | -------------------------------------------------------------GCAACCU---------------------------- | 2 | novel | ||||||
| seed | -----------------------------------------------------------CCGCAAC------------------------------ | 1 | novel | ||||||
| seed | --------------------------------------------------------------------UGCCCAG--------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------GCCCAGC-------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------AGCCGCA-------------------------------- | 1 | novel | ||||||
| seed | --------------------------------------------------------------CAACCUU--------------------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------CUGUGAG------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T5S1 | |||
| ------------------------------------------------------------CGCAACCTTGCCCAGCGA------------------ | 18 | - | - | - | - | 2 | - | - | |
| --------------------------------------------------CTCTGTGAGCCGCAACCTT--------------------------- | 19 | - | - | 1 | 1 | - | - | - | |
| ----------------------------------------------------------GCCGCAACCTTGCCCAGCGA------------------ | 20 | - | - | - | - | 1 | - | - | |
| -------------------------------------------------------------GCAACCTTGCCCAGCGAGC---------------- | 19 | - | - | - | - | - | - | 1 | |
| --------------------------------------------------CTCTGTGAGCCGCAACCT---------------------------- | 18 | - | 1 | - | - | - | - | - | |
| --------------------------------------------------------------------TGCCCAGCGAGCGGTTGGGTGT------ | 22 | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------TTGCCCAGCGAGCGGTTG----------- | 18 | - | 1 | - | - | - | - | - | |
| --------------------------------------------------------GAGCCGCAACCTTGCCCAG--------------------- | 19 | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------TCTGTGAGCCGCAACCTTG-------------------------- | 19 | 1 | - | - | - | - | - | - | |
| rat | ggtgacgctgcgcgaagggcacggatcttcgggcggggaggacattcggcCTCTGTGAGCCGCAACCTTGCCCAGCGAGCGGTTGGGTGTtcgcca | ||||||||
| ************************************************************************************************ | |||||||||
| ......................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000048575 ENSRNOG00000008289 Slc25a3 | ||||||||
| rat | (((((((((((.((..(((((.((.....(((.((.(((((........))))).))..)))...)).)))))..)).))))).....)).)))). | 0.800 -40.00 | |||||||
| rat | chromosome:7:28062028:28062123:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000048575|ENSRNOG00000008289 ## ENSRNOG00000008289|protein_coding|Slc25a3|Phosphate carrier protein, mitochondrial precursor (PTP) (Solute carrier family 25 member 3). [Source:UniProtKB/Swiss-Prot;Acc:P16036] |
block2325362 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.161 | no | no | 0.28/0.42 | 18/23/0.60 | 2.1 | 0.8 | 19 | 0 | 8 | 0 | 17 | 4 | 3arm | 1 | nd | 0.32 | 3 | 30 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -----------------------------------------------------------GGUGAUA---------------------------------- | 9 | novel | |||||||
| seed | -----------------------------------------------------------------ACAGAUU---------------------------- | 8 | novel | |||||||
| seed | --------------------------------------------------------------GAUACAG------------------------------- | 7 | novel | |||||||
| seed | -------------------------------------------------------CCUUGGU-------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------------GUCCUUG---------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------------------------------------UGGUGAU----------------------------------- | 1 | novel | |||||||
| seed | ------------------------------------------------------------GUGAUAC--------------------------------- | 1 | novel | |||||||
| seed | -------------------------------------------------------------------AGAUUGA-------------------------- | 1 | novel | |||||||
| seed | ------------------------------------------------------------------CAGAUUG--------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------TACAGATTGAATCTACTAC----------------- | 19 | 2 | - | - | - | - | - | 6 | - | |
| ----------------------------------------------------------TGGTGATACAGATTGAATCTACT------------------- | 23 | - | - | - | - | 1 | 1 | 5 | - | |
| -------------------------------------------------------------TGATACAGATTGAATCTACT------------------- | 20 | - | - | - | - | - | - | 6 | - | |
| ------------------------------------------------------TCCTTGGTGATACAGATTGA-------------------------- | 20 | - | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------TGTCCTTGGTGATACAGATTGAA------------------------- | 23 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------TTGGTGATACAGATTGAATCT---------------------- | 21 | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------TGGTGATACAGATTGAATCT---------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------ACAGATTGAATCTACTACG---------------- | 19 | - | 1 | - | - | - | - | - | - | |
| ------------------------------------------------------------------CAGATTGAATCTACTACGG--------------- | 19 | - | - | - | 1 | - | - | - | - | |
| -----------------------------------------------------------GGTGATACAGATTGAATCTACT------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------TGATACAGATTGAATCTA--------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------TGGTGATACAGATTGAAT------------------------ | 18 | - | - | 1 | - | - | - | - | - | |
| rat | ttccctcagaatatgtccaaagaattggtagaggatctggggttggggggtgtgtcctTGGTGATACAGATTGAATCTACTACgggaactccaggggagg | |||||||||
| **************************************************************************************************** | ||||||||||
| rat | ((((((..((.....(((.......(((((((.((((((..((..((((.....))))..))....))))))...)))))))..)))..))..)))))). | 0.470 -27.80 | ||||||||
| rat | chromosome:8:72083462:72083561:-1 | intergenic |
block204081 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.50/0.58 | 19/24/0.67 | 1.2 1.3 | 0.4 0.9 | 15 7 | 0 0 | 3 1 | 0 0 | 5 14 | 30 18 | 5arm 5arm | 2 2 | nd nd | 0.32 0.41 | 3 7 | 24 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------GUCUGCC----------------------------------------------------------------------------------------------------- | 8 | miR-346 | ||
| seed | ------CCUGUCU-------------------------------------------------------------------------------------------------------- | 4 | novel | ||
| seed | --------UGUCUGC------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -----------CUGCCUG--------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------AACUCAC-------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | --------------------CUCACUC------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -----UCCUGUC--------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------GAACUCA--------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------ACUCACU------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------CUGAACU----------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T4S2 | T5S1 | |||
| --------TGTCTGCCTGAACTCACTC------------------------------------------------------------------------------------------ | 19 | 1 | - | 5 | |
| -----TCCTGTCTGCCTGAACTCACTC------------------------------------------------------------------------------------------ | 22 | - | - | 4 | |
| -------------------ACTCACTCCGGAACTCTCATTC---------------------------------------------------------------------------- | 22 | - | - | 2 | |
| -------CTGTCTGCCTGAACTCACTC------------------------------------------------------------------------------------------ | 20 | - | - | 2 | |
| --------TGTCTGCCTGAACTCACTCC----------------------------------------------------------------------------------------- | 20 | - | - | 2 | |
| -----------------GAACTCACTCCGGAACTCTCA------------------------------------------------------------------------------- | 21 | - | - | 2 | |
| ----------TCTGCCTGAACTCACTCCG---------------------------------------------------------------------------------------- | 19 | - | - | 2 | |
| ------------------AACTCACTCCGGAACTCTCA------------------------------------------------------------------------------- | 20 | - | - | 1 | |
| --------------CCTGAACTCACTCCGGAACTCTCA------------------------------------------------------------------------------- | 24 | - | - | 1 | |
| ----------------TGAACTCACTCCGGAACTCTCA------------------------------------------------------------------------------- | 22 | - | - | 1 | |
| ----CTCCTGTCTGCCTGAACTCACTC------------------------------------------------------------------------------------------ | 23 | - | 1 | - | |
| rat | ctgccTCCTGTCTGCCTGAACTCACTCCGGAACTCTCATTCtgcctctgcagttccctgcacagccaggggcagggcagagcatctgtgtgaggtcccctgcacagccaggggcagg | ||||
| ********************************************************************************************************************* | |||||
| rat | (((((.((((.(((...((.(((((..((((.......(((((((.((((....(((((......))))))))))))))))..)))).))))).)).......))).))))))))). | 0.740 -50.00 | |||
| rat | chromosome:12:44298291:44298407:-1 | intergenic |
block1060469 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.292 | no | no | 0.37/0.57 | 18/24/0.55 | 3.7 | 5.3 | 11 | 0 | 2 | 0 | 5 | 15 | 3arm | 1 | nd | 0.33 | 3 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------------------AAUACCU------------------------- | 5 | novel | |
| seed | -------------------------------------------------------------------------------AGUUUAA------------------------------ | 4 | novel | |
| seed | ---------------------------------------------------------------------------GUUUAGU---------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------------------------GGGAAGC------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| ------------------------------------------------------------------------------TAGTTTAATACCTGGGAAG------------------- | 19 | - | 2 | |
| -----------------------------------------------------------------------------------TAATACCTGGGAAGCCTCTGTGA---------- | 23 | - | 2 | |
| -----------------------------------------------------------------------------------TAATACCTGGGAAGCCTCT-------------- | 19 | - | 2 | |
| ------------------------------------------------------------------------------TAGTTTAATACCTGGGAAGCCTCT-------------- | 24 | 1 | 1 | |
| --------------------------------------------------------------------------GGTTTAGTTTAATACCTGGGA--------------------- | 21 | - | 1 | |
| ------------------------------------------------------------------------------------------TGGGAAGCCTCTGTGATGCTG----- | 21 | - | 1 | |
| -----------------------------------------------------------------------------------TAATACCTGGGAAGCCTC--------------- | 18 | - | 1 | |
| rat | tgaccggagcagccactcctggggcggctaggaataggcctggttcgtgagtctcccctgagataagtgacttaGGTTTAGTTTAATACCTGGGAAGCCTCTGTGATGCTGgggca | |||
| ******************************************************************************************************************** | ||||
| rat | ((.((..((((..(((....(((((..(((((..(((((((((.((((..(((((....)))))..)))).)))))))))........)))))...))))).))).))))..)))) | 0.840 -38.90 | ||
| rat | chromosome:20:5506135:5506250:-1 | intergenic |
block1061208 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.168 | no | no | 0.47/0.56 | 18/24/0.64 | 1.2 0.0 | 1.5 0.8 | 24 8 | 0 0 | 5 2 | 0 0 | 11 19 | 20 15 | 5arm 5arm | 1 1 | nd nd | 0.32 0.43 | 3 6 | 42 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------GUCCCGA------------------------------------------------------------------------------------------------- | 21 | novel | ||||
| seed | --------------------AACCCAG----------------------------------------------------------------------------------------- | 10 | novel | ||||
| seed | --------------CCCGAUA----------------------------------------------------------------------------------------------- | 9 | novel | ||||
| seed | ---------------------ACCCAGG---------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ---------------CCGAUAA---------------------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T5S1 | |||
| -----------TGTCCCGATAACCCAGGAATACAG--------------------------------------------------------------------------------- | 24 | 1 | - | - | 1 | 8 | |
| -------------TCCCGATAACCCAGGAATACAG--------------------------------------------------------------------------------- | 22 | - | - | - | - | 9 | |
| -----------TGTCCCGATAACCCAGGAA-------------------------------------------------------------------------------------- | 19 | - | 1 | - | - | 7 | |
| -------------------TAACCCAGGAATACAGCAG------------------------------------------------------------------------------ | 19 | - | 1 | - | - | 4 | |
| -----------TGTCCCGATAACCCAGGA--------------------------------------------------------------------------------------- | 18 | - | - | 1 | - | 1 | |
| -------------------TAACCCAGGAATACAGCAGGT---------------------------------------------------------------------------- | 21 | - | - | - | - | 2 | |
| -------------------TAACCCAGGAATACAGCAGG----------------------------------------------------------------------------- | 20 | - | - | - | - | 2 | |
| -------------------TAACCCAGGAATACAGCAGGTCT-------------------------------------------------------------------------- | 23 | - | - | - | - | 1 | |
| --------------CCCGATAACCCAGGAATACA---------------------------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| --------------------AACCCAGGAATACAGCAGGTCT-------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | |
| -----------TGTCCCGATAACCCAGGAATACA---------------------------------------------------------------------------------- | 23 | - | - | - | - | 1 | |
| rat | tcagggtgcacTGTCCCGATAACCCAGGAATACAGCAGgtcttgcagcttgctggttagcctagcctcctgcaaagagacaggcaagcttgtgttttggtcatcttgcctctctgg | ||||||
| ******************************************************************************************************************** | |||||||
| rat | .(((((.(((..((.((((.(((.((((......((..(((((((((...(((((.....)))))...)))))...))))..))...)))).)))))))..))..)))..))))). | 0.400 -36.00 | |||||
| rat | chromosome:20:5531641:5531756:-1 | intergenic |
block1414108 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.582 | no | no | 0.26/0.50 | 19/25/0.50 | 1.2 0.0 | 0.8 0.0 | 12 1 | 0 0 | 2 1 | 0 0 | 22 15 | 1 13 | 3arm 3arm | 2 2 | nd nd | 0.40 0.35 | 7 3 | 22 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------UUUGUAG--------------------------------------- | 10 | novel | |
| seed | ------------------------------------------------------------GUAGAAU------------------------------------ | 6 | novel | |
| seed | ------------------------------------------------------CCUUUUG------------------------------------------ | 3 | novel | |
| seed | -----------------------------------------------------------UGUAGAA------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------UAACUGC--------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------UAGAAUU----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------TTTTGTAGAATTGTAACTGCCACCA---------------------- | 25 | 2 | 7 | |
| -----------------------------------------------------------TGTAGAATTGTAACTGCCAC------------------------ | 20 | - | 5 | |
| -----------------------------------------------------CCCTTTTGTAGAATTGTAACTG---------------------------- | 22 | - | 2 | |
| -----------------------------------------------------------TGTAGAATTGTAACTGCCACC----------------------- | 21 | - | 1 | |
| -----------------------------------------------------CCCTTTTGTAGAATTGTAACT----------------------------- | 21 | - | 1 | |
| ------------------------------------------------------------GTAGAATTGTAACTGCCAC------------------------ | 19 | - | 1 | |
| ----------------------------------------------------------TTGTAGAATTGTAACTGCCAC------------------------ | 21 | - | 1 | |
| --------------------------------------------------------TTTTGTAGAATTGTAACTG---------------------------- | 19 | - | 1 | |
| --------------------------------------------------------------------GTAACTGCCACCATAGTCTG--------------- | 20 | - | 1 | |
| rat | gcaaaagattaatgatatgaatgtggtgtagagtttatgaaggtgttctttctcccTTTTGTAGAATTGTAACTGCCACCAtagtctgcatgaggatatggct | |||
| ******************************************************************************************************* | ||||
| rat | ((.....(((.(((....((.((((((((((..((((..((((............))))..)))).......)))).)))))).))..)))...)))...)). | 0.730 -19.00 | ||
| rat | chromosome:3:141689893:141689995:-1 | intergenic |
block1469577 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.136 | no | no | 0.33/0.48 | 18/26/0.60 | 2.7 | 0.8 | 15 | 0 | 5 | 0 | 24 | 4 | 5arm_loop | 1 | nd | 0.42 | 3 | 35 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------CACAUCU-------------------------------------------------------------------------------- | 13 | novel | ||||
| seed | ------------------------------CUAUCAA--------------------------------------------------------------------------- | 7 | novel | ||||
| seed | -----------------------CACACAU---------------------------------------------------------------------------------- | 5 | novel | ||||
| seed | --------------------------------AUCAAAG------------------------------------------------------------------------- | 3 | miR-291a | ||||
| seed | ------------------------ACACAUC--------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | --------------------AGGCACA------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------AAAGAUC---------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------CAAAGAU----------------------------------------------------------------------- | 1 | novel | ||||
| seed | ---------------------GGCACAC------------------------------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S2 | T5S1 | |||
| -----------------------------TCTATCAAAGATCCTACTG---------------------------------------------------------------- | 19 | - | - | - | - | 7 | |
| ------------------------ACACATCTATCAAAGATCCTACTG---------------------------------------------------------------- | 24 | - | - | - | - | 5 | |
| ----------------------GCACACATCTATCAAAGATC---------------------------------------------------------------------- | 20 | - | - | 1 | - | 2 | |
| ------------------------ACACATCTATCAAAGATCCT-------------------------------------------------------------------- | 20 | - | - | - | - | 3 | |
| ------------------------ACACATCTATCAAAGATCCTACT----------------------------------------------------------------- | 23 | - | 1 | - | 1 | 1 | |
| ------------------------ACACATCTATCAAAGATCC--------------------------------------------------------------------- | 19 | - | - | - | - | 2 | |
| -------------------CAGGCACACATCTATCAAAGA------------------------------------------------------------------------ | 21 | 1 | - | - | - | 1 | |
| -------------------------------TATCAAAGATCCTACTGCCCA------------------------------------------------------------ | 21 | 1 | - | - | - | - | |
| ---------------------------------TCAAAGATCCTACTGCCCATC---------------------------------------------------------- | 21 | - | - | - | - | 1 | |
| -----------------------CACACATCTATCAAAGATCCTACTG---------------------------------------------------------------- | 25 | - | - | - | - | 1 | |
| ----------------------GCACACATCTATCAAAGATCCTACTG---------------------------------------------------------------- | 26 | - | - | - | - | 1 | |
| --------------------AGGCACACATCTATCAAAGA------------------------------------------------------------------------ | 20 | - | - | - | - | 1 | |
| ----------------------GCACACATCTATCAAAGATCCTACT----------------------------------------------------------------- | 25 | - | - | - | - | 1 | |
| -------------------------------TATCAAAGATCCTACTGCCC------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -----------------------CACACATCTATCAAAGAT----------------------------------------------------------------------- | 18 | - | 1 | - | - | - | |
| ----------------------------------CAAAGATCCTACTGCCCATCA--------------------------------------------------------- | 21 | - | - | - | - | 1 | |
| -------------------------------TATCAAAGATCCTACTGCC-------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| rat | ttggggggtaggggttccacaggcACACATCTATCAAAGATCCTACTGcccatcatgactaaagctcctgggctccagaggtgttttgagtctgtctcccatgcatttccaa | ||||||
| **************************************************************************************************************** | |||||||
| rat | .(((((((((.(((....((((((.........((((((..(((...(((((................))))).....)))..))))))))))))..))).))).)))))). | 0.590 -31.59 | |||||
| rat | chromosome:3:76946084:76946195:1 | intergenic |
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