other hairpins
novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH (10 loci)
novel_lenNOK_cloningOK_5varHIGH_randfoldOK (10 loci)
block90972 [novel_lenNOK_cloningOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.60/0.68 | 18/22/0.38 | 0.0 1.5 | 0.0 1.0 | 1 15 | 0 0 | 1 5 | 0 0 | 16 6 | 13 17 | 3arm 3arm | 3 5 | 16 19 | 0.26 0.11 | 3 2 | 16 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------------------------------------------GCGAGUG--------------------- | 6 | novel | ||||
| seed | ----------------------------------------------------------------------------------------ACGCGAG----------------------- | 5 | novel | ||||
| seed | -----------------------------------------------------------------------------------------CGCGAGU---------------------- | 3 | novel | ||||
| seed | -----------------------------------------------------------------------------------------------UGGGAGU---------------- | 1 | novel | ||||
| seed | ------------------------------------------------------------------------------------AGCAACG--------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S1 | T3S1 | T3S2 | T5S1 | |||
| -----------------------------------------------------------------------------------------CGCGAGTGGGAGTACCTG----------- | 18 | 1 | 1 | 1 | 1 | - | |
| ---------------------------------------------------------------------------------------AACGCGAGTGGGAGTACCTG----------- | 20 | - | - | 2 | 1 | - | |
| ----------------------------------------------------------------------------------------ACGCGAGTGGGAGTACCTG----------- | 19 | - | - | - | 2 | - | |
| -----------------------------------------------------------------------------------CAGCAACGCGAGTGGGAGT---------------- | 19 | - | - | - | 1 | - | |
| ----------------------------------------------------------------------------------------------GTGGGAGTACCTGGAGCG------ | 18 | - | - | 1 | - | - | |
| -----------------------------------------------------------------------------------------CGCGAGTGGGAGTACCTGGAGC------- | 22 | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------------------AACGCGAGTGGGAGTACCTGG---------- | 21 | - | - | - | 1 | - | |
| ---------------------------------------------------------------------------------------AACGCGAGTGGGAGTACC------------- | 18 | - | - | 1 | - | - | |
| -----------------------------------------------------------------------------------------CGCGAGTGGGAGTACCTGGA--------- | 20 | - | - | - | 1 | - | |
| ----------------------------------------------------------------------------------------ACGCGAGTGGGAGTACCT------------ | 18 | - | - | - | 1 | - | |
| rat | agctatggtgagaggggtgtgaggctgcttgctcgtgtcaatggagcaagatccctaaaatataaaacacgggtctcttgctgCAGCAACGCGAGTGGGAGTACCTGGAGCGcgagct | ||||||
| ********************************************************************************************************************** | |||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000042413 ENSRNOG00000033360 Tmsb10 | ||||||
| rat | ((((...(((....((((.....(((.((..(((((((...((.(((((((.(((...............)))..))))))).))...)))))))..)))))))))....))).)))) | 0.920 -43.96 | |||||
| rat | chromosome:10:82399072:82399189:1 | Same_strand|Boundary_non-coding|ENSRNOT00000042413|ENSRNOG00000033360 ## ENSRNOG00000033360|protein_coding|Tmsb10|Thymosin beta-10. [Source:UniProtKB/Swiss-Prot;Acc:P63312] |
block117598 [novel_lenNOK_cloningOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.55/0.68 | 18/22/0.46 | 4.2 | 3.6 | 13 | 0 | 7 | 0 | 22 | 3 | 3arm | 1 | nd | 0.14 | 1 | 13 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------------------------CUGAUGU-------------------------------------------- | 4 | novel | ||||||
| seed | ----------------------------------------------------------------CCUGAUG--------------------------------------------- | 3 | novel | ||||||
| seed | ----------------------------------------------------------------------------GUCUCUG--------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------UGUCAGC---------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------------CGUCUCU---------------------------------- | 1 | novel | ||||||
| seed | -------------------------------------------------------------------------AGCGUCU------------------------------------ | 1 | novel | ||||||
| seed | -----------------------------------------------------------------------------UCUCUGG-------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------------------------------UCAGCGU-------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| ---------------------------------------------------------------TCCTGATGTCAGCGTCTCTG--------------------------------- | 20 | - | - | - | - | 1 | - | 1 | |
| ----------------------------------------------------------------CCTGATGTCAGCGTCTCTGGAG------------------------------ | 22 | - | 2 | - | - | - | - | - | |
| ----------------------------------------------------------------------GTCAGCGTCTCTGGAGCCC--------------------------- | 19 | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------------------------GCGTCTCTGGAGCCCATGA----------------------- | 19 | - | - | 1 | - | - | - | - | |
| ----------------------------------------------------------------CCTGATGTCAGCGTCTCTG--------------------------------- | 19 | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------TCCTGATGTCAGCGTCTC----------------------------------- | 18 | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------------------CGTCTCTGGAGCCCATGAA---------------------- | 19 | - | - | 1 | - | - | - | - | |
| ----------------------------------------------------------------------------GTCTCTGGAGCCCATGAA---------------------- | 18 | - | - | 1 | - | - | - | - | |
| --------------------------------------------------------------------ATGTCAGCGTCTCTGGAGCC---------------------------- | 20 | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------CAGCGTCTCTGGAGCCCA-------------------------- | 18 | - | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------CCTGATGTCAGCGTCTCTGGA------------------------------- | 21 | - | 1 | - | - | - | - | - | |
| rat | cccggctcagtttcctgtttttgtcccgaggcttccgaggcgttgcgccaggggttgcttaacTCCTGATGTCAGCGTCTCTGGAGCCCATGAAtcaaaggaccccgggaccggga | ||||||||
| ******************************************************************************************************************** | |||||||||
| rat | ((((((((....((((.......((....((((((.(((((((((((.((((((((....)))))))).)).))))))))).))))))...)).....))))....))).))))). | 0.920 -54.20 | |||||||
| rat | chromosome:11:31454616:31454731:-1 | intergenic |
block1671653 [novel_lenNOK_cloningOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.45/0.61 | 18/24/0.61 | 3.0 | 4.6 | 18 | 0 | 4 | 0 | 8 | 20 | 5arm | 3 | nd | 0.14 | 1 | 18 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------GCAAUGU----------------------------------------------------------------------------------------------------- | 8 | novel | |||
| seed | -----------------GACCUGU---------------------------------------------------------------------------------------------- | 6 | novel | |||
| seed | ---------------GUGACCU------------------------------------------------------------------------------------------------ | 2 | novel | |||
| seed | ---------AGCAAUG------------------------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | -----------CAAUGUG---------------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T4S1 | T5S1 | |||
| ---------AGCAATGTGACCTGTGATG------------------------------------------------------------------------------------------ | 19 | - | 3 | - | - | |
| ---------AGCAATGTGACCTGTGATGGGA--------------------------------------------------------------------------------------- | 22 | - | - | - | 3 | |
| ----------------TGACCTGTGATGGGATGGG----------------------------------------------------------------------------------- | 19 | - | - | - | 2 | |
| --------------TGTGACCTGTGATGGGATGGGGGT-------------------------------------------------------------------------------- | 24 | 1 | - | - | 1 | |
| ----------------TGACCTGTGATGGGATGG------------------------------------------------------------------------------------ | 18 | - | - | - | 2 | |
| ----------------TGACCTGTGATGGGATGGGGGT-------------------------------------------------------------------------------- | 22 | - | - | - | 1 | |
| ----------------TGACCTGTGATGGGATGGGGGTG------------------------------------------------------------------------------- | 23 | - | - | 1 | - | |
| ---------AGCAATGTGACCTGTGATGG----------------------------------------------------------------------------------------- | 20 | - | - | - | 1 | |
| --------AAGCAATGTGACCTGTGATG------------------------------------------------------------------------------------------ | 20 | - | - | - | 1 | |
| ----------GCAATGTGACCTGTGATGGGAT-------------------------------------------------------------------------------------- | 22 | 1 | - | - | - | |
| ---------AGCAATGTGACCTGTGATGGG---------------------------------------------------------------------------------------- | 21 | - | - | - | 1 | |
| rat | gaggcctcAAGCAATGTGACCTGTGATGGGATGGGGGTGcgggagcaggggagggcatgtataacgttggcaggagactgccctgtagaggagtcccacatgggcacttgcaggcctc | |||||
| ********************************************************************************************************************** | ||||||
| rat | (((((((...((((.(((.((((((.((((((.....((((((.((((......(((((.....)))..))......)))))))))).....)))))))))))))))))))))))))) | 0.710 -54.30 | ||||
| rat | chromosome:4:119377214:119377331:1 | intergenic |
block1715406 [novel_lenNOK_cloningOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.56/0.63 | 18/23/0.31 | 1.4 | 1.4 | 16 | 0 | 6 | 0 | 28 | 3 | 5arm | 2 | nd | 0.21 | 1 | 16 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -----------------------------AGCUAGU---------------------------------------------------------------------------- | 11 | novel | |||||
| seed | -------------------------------CUAGUGG-------------------------------------------------------------------------- | 4 | novel | |||||
| seed | --------------------------------UAGUGGG------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| ----------------------------GAGCTAGTGGGAGTGGAAC----------------------------------------------------------------- | 19 | 1 | 2 | 2 | - | 1 | - | |
| ------------------------------GCTAGTGGGAGTGGAACGC--------------------------------------------------------------- | 19 | 3 | - | - | - | - | 1 | |
| ----------------------------GAGCTAGTGGGAGTGGAACG---------------------------------------------------------------- | 20 | - | - | - | - | 2 | - | |
| ----------------------------GAGCTAGTGGGAGTGGAA------------------------------------------------------------------ | 18 | 1 | - | - | - | - | - | |
| -------------------------------CTAGTGGGAGTGGAACGCACT------------------------------------------------------------ | 21 | - | - | - | 1 | - | - | |
| ----------------------------GAGCTAGTGGGAGTGGAACGC--------------------------------------------------------------- | 21 | - | - | 1 | - | - | - | |
| ----------------------------GAGCTAGTGGGAGTGGAACGCAC------------------------------------------------------------- | 23 | - | 1 | - | - | - | - | |
| rat | aagcaatctagattttacctgaatgtttGAGCTAGTGGGAGTGGAACGCACTggccattgtagccatcgccttcttcctccccacagtccaaactgtggtgactaggccgct | |||||||
| **************************************************************************************************************** | ||||||||
| rat | .(((..(((((...(((((.....(((((..((.(((((((.((((.((..((((.......))))..)).))))..))))).))))..)))))...))))))))))..))) | 1.000 -39.50 | ||||||
| rat | chromosome:5:9692771:9692882:-1 | intergenic |
block2189938 [novel_lenNOK_cloningOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.29/0.45 | 19/25/0.50 | 3.3 | 3.6 | 10 | 0 | 3 | 0 | 11 | 1 | 3arm | 10 | nd | 0.16 | 2 | 10 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------GACAAUC---------------------------------- | 4 | novel | ||
| seed | -------------------------------------------------------GUGACAA------------------------------------ | 3 | novel | ||
| seed | --------------------------------------------------------------------UCUGAUC----------------------- | 2 | novel | ||
| seed | --------------------------------------------------------------UCUAUUU----------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S1 | |||
| --------------------------------------------------------TGACAATCTATTTCTGATCTCTTTC----------------- | 25 | - | - | 3 | |
| ------------------------------------------------------TGTGACAATCTATTTCTGA------------------------- | 19 | - | - | 2 | |
| -------------------------------------------------------------------TTCTGATCTCTTTCGTGGTC----------- | 20 | 1 | 1 | - | |
| --------------------------------------------------------TGACAATCTATTTCTGATCTCTTT------------------ | 24 | - | - | 1 | |
| ------------------------------------------------------TGTGACAATCTATTTCTGATCTCT-------------------- | 24 | - | - | 1 | |
| -------------------------------------------------------------ATCTATTTCTGATCTCTTTCGTGG------------- | 24 | - | - | 1 | |
| rat | tttggtggattaggtttccggttgccagaagtgagttgcaatgtcatagggcccTGTGACAATCTATTTCTGATCTCTTTCGTGGTCcttccactgaa | ||||
| ************************************************************************************************** | |||||
| rat | ((..(((((..(((..(((((....((((((((.((.....((((((((....)))))))))).)))))))).......))).)).))))))))..)) | 0.910 -30.10 | |||
| rat | chromosome:7:18371152:18371249:1 | intergenic |
block2189951 [novel_lenNOK_cloningOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.29/0.45 | 19/25/0.50 | 3.3 | 3.6 | 10 | 0 | 3 | 0 | 11 | 1 | 3arm | 10 | nd | 0.16 | 2 | 10 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------GACAAUC---------------------------------- | 4 | novel | ||
| seed | -------------------------------------------------------GUGACAA------------------------------------ | 3 | novel | ||
| seed | --------------------------------------------------------------------UCUGAUC----------------------- | 2 | novel | ||
| seed | --------------------------------------------------------------UCUAUUU----------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S1 | |||
| --------------------------------------------------------TGACAATCTATTTCTGATCTCTTTC----------------- | 25 | - | - | 3 | |
| ------------------------------------------------------TGTGACAATCTATTTCTGA------------------------- | 19 | - | - | 2 | |
| -------------------------------------------------------------------TTCTGATCTCTTTCGTGGTC----------- | 20 | 1 | 1 | - | |
| --------------------------------------------------------TGACAATCTATTTCTGATCTCTTT------------------ | 24 | - | - | 1 | |
| ------------------------------------------------------TGTGACAATCTATTTCTGATCTCT-------------------- | 24 | - | - | 1 | |
| -------------------------------------------------------------ATCTATTTCTGATCTCTTTCGTGG------------- | 24 | - | - | 1 | |
| rat | tttggtggattaggtttccggttgccagaagtgagttgcaatgtcatagggcccTGTGACAATCTATTTCTGATCTCTTTCGTGGTCcttccactgaa | ||||
| ************************************************************************************************** | |||||
| rat | ((..(((((..(((..(((((....((((((((.((.....((((((((....)))))))))).)))))))).......))).)).))))))))..)) | 0.910 -30.10 | |||
| rat | chromosome:7:18372034:18372131:1 | intergenic |
block233509 [novel_lenNOK_cloningOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.50/0.58 | 19/24/0.64 | 1.2 1.0 | 0.4 0.0 | 15 5 | 0 0 | 3 1 | 0 0 | 5 14 | 23 14 | 5arm 5arm | 2 2 | nd nd | 0.32 0.27 | 3 2 | 22 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------GUCUGCC----------------------------------------------------------------------------------------------------- | 8 | miR-346 | ||
| seed | ------CCUGUCU-------------------------------------------------------------------------------------------------------- | 4 | novel | ||
| seed | --------UGUCUGC------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -----------CUGCCUG--------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------AACUCAC-------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -----UCCUGUC--------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------GAACUCA--------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------ACUCACU------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------CUGAACU----------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T4S2 | T5S1 | |||
| --------TGTCTGCCTGAACTCACTC------------------------------------------------------------------------------------------ | 19 | 1 | - | 5 | |
| -----TCCTGTCTGCCTGAACTCACTC------------------------------------------------------------------------------------------ | 22 | - | - | 4 | |
| -------CTGTCTGCCTGAACTCACTC------------------------------------------------------------------------------------------ | 20 | - | - | 2 | |
| --------TGTCTGCCTGAACTCACTCC----------------------------------------------------------------------------------------- | 20 | - | - | 2 | |
| -----------------GAACTCACTCCGGAACTCTCA------------------------------------------------------------------------------- | 21 | - | - | 2 | |
| ----------TCTGCCTGAACTCACTCCG---------------------------------------------------------------------------------------- | 19 | - | - | 2 | |
| ------------------AACTCACTCCGGAACTCTCA------------------------------------------------------------------------------- | 20 | - | - | 1 | |
| --------------CCTGAACTCACTCCGGAACTCTCA------------------------------------------------------------------------------- | 24 | - | - | 1 | |
| ----------------TGAACTCACTCCGGAACTCTCA------------------------------------------------------------------------------- | 22 | - | - | 1 | |
| ----CTCCTGTCTGCCTGAACTCACTC------------------------------------------------------------------------------------------ | 23 | - | 1 | - | |
| rat | ctgccTCCTGTCTGCCTGAACTCACTCCGGAACTCTCAtcctgcctctgcagttccctgcacagccaggggcagggcagagcatctgtgtgaggtcccctgcacagccaggggcagg | ||||
| ********************************************************************************************************************* | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | ||||
| rat | (((((.((((.(((...((.(((((..((((.((((..((((((((((((((....)))))......))))))))).))))..)))).))))).)).......))).))))))))). | 0.970 -52.30 | |||
| rat | chromosome:12:43044711:43044827:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
block602269 [novel_lenNOK_cloningOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.39/0.53 | 19/24/0.41 | 0.0 3.4 | 0.0 3.6 | 8 7 | 0 0 | 3 4 | 0 0 | 5 9 | 24 9 | 5arm 5arm | 1 1 | nd nd | 0.21 0.17 | 1 1 | 17 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------CCCUCAU------------------------------------------------------------------------------------------------ | 10 | novel | ||||
| seed | ----------------CACCAAC-------------------------------------------------------------------------------------- | 4 | novel | ||||
| seed | ----------CAUCCUC-------------------------------------------------------------------------------------------- | 3 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T5S1 | |||
| -----TCCCTCATCCTCACCAACT------------------------------------------------------------------------------------- | 19 | - | 1 | 1 | - | 8 | |
| ---------------TCACCAACTTTATCACTGACCAG----------------------------------------------------------------------- | 23 | - | 1 | - | - | 2 | |
| ---------TCATCCTCACCAACTTTATCACT----------------------------------------------------------------------------- | 23 | 1 | - | - | 2 | - | |
| ---------------TCACCAACTTTATCACTGACCAGC---------------------------------------------------------------------- | 24 | - | - | - | - | 1 | |
| rat | gccccTCCCTCATCCTCACCAACTttatcactgaccagcgcagagactgtgtaagtctagcaggatggtgactggctgtaaagggaggagagaagggaggtgaggggca | ||||||
| ************************************************************************************************************* | |||||||
| rat | (((((((((((.(((((.((.((.(((((((((.((.((....(((((.....))))).)).)).)))))).)))..))...))))))).......)))).))))))). | 0.870 -47.30 | |||||
| rat | chromosome:17:18981329:18981437:-1 | intergenic |
block913822 [novel_lenNOK_cloningOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.72/0.76 | 18/21/0.30 | 1.7 | 0.3 | 10 | 0 | 5 | 0 | 20 | 10 | 5arm | 1 | nd | 0.14 | 3 | 10 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----------------------UCCUCGG------------------------------------------------------------------------------------- | 4 | novel | ||||
| seed | ---------------------GGUCCUC--------------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | ------------------------CCUCGGA------------------------------------------------------------------------------------ | 3 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S2 | T3S1 | T4S2 | T5S2 | |||
| ----------------------GTCCTCGGAGCCAGACCC--------------------------------------------------------------------------- | 18 | 1 | - | 1 | - | 1 | |
| -----------------------TCCTCGGAGCCAGACCCG-------------------------------------------------------------------------- | 18 | - | 1 | 1 | 1 | - | |
| --------------------CGGTCCTCGGAGCCAGACCCG-------------------------------------------------------------------------- | 21 | - | - | 3 | - | - | |
| ----------------------GTCCTCGGAGCCAGACCCG-------------------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| rat | gctgcctcgttcactgcctaCGGTCCTCGGAGCCAGACCCGggccggagcctgagcggcaaccggcccgaggaggggcttcagagccgcggccgtgggcgggcgatgctgcagct | ||||||
| ******************************************************************************************************************* | |||||||
| rat | (((((..((((..(((((((((((((((((((((...((((((((((.(((.....)))..)))))))).))...)))))).)))....))))))))))))..))))..))))). | 1.000 -73.60 | |||||
| rat | chromosome:1:208100569:208100683:-1 | intergenic |
block1848467 [novel_lenNOK_cloningOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.47/0.58 | 19/25/0.54 | 0.0 3.4 | 0.0 4.7 | 1 31 | 0 0 | 1 3 | 0 0 | 41 24 | -4 1 | 3arm_loop 3arm | 1 1 | nd nd | 0.47 0.26 | 3 2 | 35 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------------------ACCCUUA----------------------------------------------- | 18 | novel | |||
| seed | ------------------------------------------------------------------------GGAAAGC--------------------------------------- | 8 | novel | |||
| seed | ----------------------------------------------------------------------AAGGAAA----------------------------------------- | 7 | novel | |||
| seed | -----------------------------------------------------------CCGGAAC---------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------------GAAAGCC-------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| -----------------------------------------------------------------------AGGAAAGCCGTCTGCACAGAAGA------------------------ | 23 | - | 2 | - | 4 | |
| ---------------------------------------------------------------AACCCTTAAGGAAAGCCGTCT---------------------------------- | 21 | - | - | - | 6 | |
| ---------------------------------------------------------------AACCCTTAAGGAAAGCCGTCTGCAC------------------------------ | 25 | - | - | - | 6 | |
| ---------------------------------------------------------------------TAAGGAAAGCCGTCTGCAC------------------------------ | 19 | - | - | - | 4 | |
| ---------------------------------------------------------------AACCCTTAAGGAAAGCCGTCTG--------------------------------- | 22 | - | - | - | 4 | |
| ---------------------------------------------------------------------TAAGGAAAGCCGTCTGCACAGAAGA------------------------ | 25 | - | - | - | 3 | |
| -----------------------------------------------------------------------AGGAAAGCCGTCTGCACAG---------------------------- | 19 | - | - | - | 2 | |
| ---------------------------------------------------------------AACCCTTAAGGAAAGCCGTC----------------------------------- | 20 | 1 | - | - | 1 | |
| ------------------------------------------------------------------------GGAAAGCCGTCTGCACAGAAGA------------------------ | 22 | - | - | - | 1 | |
| ----------------------------------------------------------TCCGGAACCCTTAAGGAAA----------------------------------------- | 19 | - | - | 1 | - | |
| rat | ctctgtccacagagagtgctgccatgcttctgccaagcaggagaagcgtccgggggtctccggAACCCTTAAGGAAAGCCGTCTGCACAGAAGAtaagcattttctgtgagtcgtgag | |||||
| ********************************************************************************************************************** | ||||||
| rat | (((((..(((((((((((((......((((((....(((((....((.(((.((((((....)).))))...)))..))..))))).))))))...)))))))))))))...)).))) | 0.560 -45.40 | ||||
| rat | chromosome:5:79244960:79245077:1 | intergenic |
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