other hairpins
novel_lenNOK_cloningOK_5varHIGH_randfoldOK (10 loci)
novel_lenNOK_cloningOK_Multihit_5varHIGH (10 loci)
block842967 [novel_lenNOK_cloningOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.175 | no | no | 0.36/0.58 | 18/25/0.64 | 0.0 1.2 | 0.0 2.5 | 1 10 | 0 0 | 1 2 | 0 0 | 10 17 | 25 7 | 5arm 5arm | 24 24 | nd nd | 0.21 0.10 | 2 1 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------CCCAUGG-------------------------------------------------------------------------------- | 4 | novel | |
| seed | -------------------CCAUGGU------------------------------------------------------------------------------- | 4 | novel | |
| seed | -----------------------GGUCCUU--------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------CCUGUGU--------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------CCCATGGTCCTTAAGACTTT------------------------------------------------------------------- | 20 | - | 3 | |
| -----------------TCCCATGGTCCTTAAGACTTT------------------------------------------------------------------- | 21 | 1 | 1 | |
| ----------------------TGGTCCTTAAGACTTTGTATTGAGA---------------------------------------------------------- | 25 | - | 2 | |
| -----------------TCCCATGGTCCTTAAGACTTTGT----------------------------------------------------------------- | 23 | - | 1 | |
| ------------------CCCATGGTCCTTAAGACTTTGT----------------------------------------------------------------- | 22 | - | 1 | |
| -----------------TCCCATGGTCCTTAAGAC---------------------------------------------------------------------- | 18 | - | 1 | |
| ----------TCCTGTGTCCCATGGTCCT---------------------------------------------------------------------------- | 19 | - | 1 | |
| rat | aaggcattgcTCCTGTGTCCCATGGTCCTTAAGACTTTGTATTGAGAgtggaagtttccttcctcagagattcggctggggactagggtgtgggaactcctcctt | |||
| ********************************************************************************************************* | ||||
| <<<<<.............................................................................................................. | ENSRNOT00000045258 ENSRNOG00000033713 | |||
| rat | ((((......(((..((.(((.(((((((((.(((((((..........(((((....))))).)))))..))...))))))))))))))..)))......)))) | 0.850 -31.90 | ||
| rat | chromosome:1:49024080:49024184:-1 | intergenic |
block844602 [novel_lenNOK_cloningOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.548 | no | no | 0.47/0.58 | 19/23/0.45 | 1.7 1.7 | 2.7 0.3 | 3 6 | 0 0 | 2 3 | 0 0 | 17 7 | 2 12 | 3arm 3arm | 25 25 | nd nd | 0.45 0.16 | 9 1 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------------------------GUCCCAG------------------ | 4 | novel | |||
| seed | ---------------------------------------------------------------------------CCACUGU----------------------- | 4 | novel | |||
| seed | -----------------------------------------------------------------AGCAGAA--------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------------AACUUCC---------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------------------------------------------TGTCCCAGCACCTGAACTA------- | 19 | - | - | - | 4 | |
| --------------------------------------------------------------------------TCCACTGTCCCAGCACCTGAACT-------- | 23 | 1 | - | 1 | 2 | |
| ---------------------------------------------------------------------GAACTTCCACTGTCCCAGC----------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------------TAGCAGAACTTCCACTGTCCCA------------------- | 22 | - | 1 | - | - | |
| ----------------------------------------------------------------TAGCAGAACTTCCACTGTC---------------------- | 19 | - | - | - | 1 | |
| rat | tttgccatggtcatgtttggctggcaccatttcttcttctttgcatgcactttgataacccctgtagcagaactTCCACTGTCCCAGCACCTGAACTAtcccaag | |||||
| ********************************************************************************************************* | ||||||
| ------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | |||||
| rat | .(((..(((((((.((...(((((.((............(((((.((((.............))))))))).........)).))))))).))).))))..))). | 0.830 -17.32 | ||||
| rat | chromosome:1:50292434:50292538:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
block845851 [novel_lenNOK_cloningOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.548 | no | no | 0.47/0.58 | 19/23/0.45 | 1.7 1.7 | 2.7 0.3 | 3 6 | 0 0 | 2 3 | 0 0 | 17 7 | 2 12 | 3arm 3arm | 25 25 | nd nd | 0.45 0.16 | 9 1 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------------------------GUCCCAG------------------ | 4 | novel | |||
| seed | ---------------------------------------------------------------------------CCACUGU----------------------- | 4 | novel | |||
| seed | -----------------------------------------------------------------AGCAGAA--------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------------AACUUCC---------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------------------------------------------TGTCCCAGCACCTGAACTA------- | 19 | - | - | - | 4 | |
| --------------------------------------------------------------------------TCCACTGTCCCAGCACCTGAACT-------- | 23 | 1 | - | 1 | 2 | |
| ---------------------------------------------------------------------GAACTTCCACTGTCCCAGC----------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------------TAGCAGAACTTCCACTGTCCCA------------------- | 22 | - | 1 | - | - | |
| ----------------------------------------------------------------TAGCAGAACTTCCACTGTC---------------------- | 19 | - | - | - | 1 | |
| rat | tttgccatggtcatgtttggctggcaccatttcttcttctttgcatgcactttgataacccctgtagcagaactTCCACTGTCCCAGCACCTGAACTAtcccaag | |||||
| ********************************************************************************************************* | ||||||
| rat | .(((..(((((((.((...(((((.((............(((((.((((.............))))))))).........)).))))))).))).))))..))). | 0.830 -17.32 | ||||
| rat | chromosome:1:50838282:50838386:-1 | intergenic |
block961889 [novel_lenNOK_cloningOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.539 | no | no | 0.47/0.58 | 19/23/0.45 | 1.7 1.7 | 2.7 0.3 | 3 6 | 0 0 | 2 3 | 0 0 | 17 7 | 2 12 | 3arm 3arm | 25 25 | nd nd | 0.36 0.16 | 5 1 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------------------------GUCCCAG------------------ | 4 | novel | |||
| seed | ---------------------------------------------------------------------------CCACUGU----------------------- | 4 | novel | |||
| seed | -----------------------------------------------------------------AGCAGAA--------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------------AACUUCC---------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------------------------------------------TGTCCCAGCACCTGAACTA------- | 19 | - | - | - | 4 | |
| --------------------------------------------------------------------------TCCACTGTCCCAGCACCTGAACT-------- | 23 | 1 | - | 1 | 2 | |
| ---------------------------------------------------------------------GAACTTCCACTGTCCCAGC----------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------------TAGCAGAACTTCCACTGTCCCA------------------- | 22 | - | 1 | - | - | |
| ----------------------------------------------------------------TAGCAGAACTTCCACTGTC---------------------- | 19 | - | - | - | 1 | |
| rat | tttgcaatggtcatgtttggctggcaccattgcttcttctttgcatgcactttgataacccctgtagcagaactTCCACTGTCCCAGCACCTGAACTAtcccaag | |||||
| ********************************************************************************************************* | ||||||
| rat | .(((..(((((((.((...(((((.((...((.......(((((.((((.............))))))))).....))..)).))))))).))).))))..))). | 0.440 -18.02 | ||||
| rat | chromosome:1:51065246:51065350:1 | intergenic |
block962730 [novel_lenNOK_cloningOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.548 | no | no | 0.47/0.58 | 19/23/0.45 | 1.7 1.7 | 2.7 0.3 | 3 6 | 0 0 | 2 3 | 0 0 | 17 7 | 2 12 | 3arm 3arm | 25 25 | nd nd | 0.45 0.16 | 9 1 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------------------------GUCCCAG------------------ | 4 | novel | |||
| seed | ---------------------------------------------------------------------------CCACUGU----------------------- | 4 | novel | |||
| seed | -----------------------------------------------------------------AGCAGAA--------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------------AACUUCC---------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------------------------------------------TGTCCCAGCACCTGAACTA------- | 19 | - | - | - | 4 | |
| --------------------------------------------------------------------------TCCACTGTCCCAGCACCTGAACT-------- | 23 | 1 | - | 1 | 2 | |
| ---------------------------------------------------------------------GAACTTCCACTGTCCCAGC----------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------------TAGCAGAACTTCCACTGTCCCA------------------- | 22 | - | 1 | - | - | |
| ----------------------------------------------------------------TAGCAGAACTTCCACTGTC---------------------- | 19 | - | - | - | 1 | |
| rat | tttgccatggtcatgtttggctggcaccatttcttcttctttgcatgcactttgataacccctgtagcagaactTCCACTGTCCCAGCACCTGAACTAtcccaag | |||||
| ********************************************************************************************************* | ||||||
| ------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||||
| rat | .(((..(((((((.((...(((((.((............(((((.((((.............))))))))).........)).))))))).))).))))..))). | 0.830 -17.32 | ||||
| rat | chromosome:1:51537560:51537664:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block962778 [novel_lenNOK_cloningOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.548 | no | no | 0.47/0.58 | 19/23/0.45 | 1.7 1.7 | 2.7 0.3 | 3 6 | 0 0 | 2 3 | 0 0 | 17 7 | 2 12 | 3arm 3arm | 25 25 | nd nd | 0.45 0.16 | 9 1 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------------------------GUCCCAG------------------ | 4 | novel | |||
| seed | ---------------------------------------------------------------------------CCACUGU----------------------- | 4 | novel | |||
| seed | -----------------------------------------------------------------AGCAGAA--------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------------AACUUCC---------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------------------------------------------TGTCCCAGCACCTGAACTA------- | 19 | - | - | - | 4 | |
| --------------------------------------------------------------------------TCCACTGTCCCAGCACCTGAACT-------- | 23 | 1 | - | 1 | 2 | |
| ---------------------------------------------------------------------GAACTTCCACTGTCCCAGC----------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------------TAGCAGAACTTCCACTGTCCCA------------------- | 22 | - | 1 | - | - | |
| ----------------------------------------------------------------TAGCAGAACTTCCACTGTC---------------------- | 19 | - | - | - | 1 | |
| rat | tttgccatggtcatgtttggctggcaccatttcttcttctttgcatgcactttgataacccctgtagcagaactTCCACTGTCCCAGCACCTGAACTAtcccaag | |||||
| ********************************************************************************************************* | ||||||
| ------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||||
| rat | .(((..(((((((.((...(((((.((............(((((.((((.............))))))))).........)).))))))).))).))))..))). | 0.830 -17.32 | ||||
| rat | chromosome:1:51539446:51539550:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block841962 [novel_lenNOK_cloningOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.056 | no | no | 0.36/0.58 | 18/25/0.64 | 0.0 1.2 | 0.0 2.5 | 1 10 | 0 0 | 1 2 | 0 0 | 16 23 | 23 5 | 5arm 5arm | 24 24 | nd nd | 0.32 0.11 | 5 1 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------CCCAUGG----------------------------------------------------------------------------------- | 4 | novel | |
| seed | -------------------------CCAUGGU---------------------------------------------------------------------------------- | 4 | novel | |
| seed | -----------------------------GGUCCUU------------------------------------------------------------------------------ | 2 | novel | |
| seed | -----------------CCUGUGU------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------CCCATGGTCCTTAAGACTTT---------------------------------------------------------------------- | 20 | - | 3 | |
| ----------------------------TGGTCCTTAAGACTTTGTATTGAGA------------------------------------------------------------- | 25 | - | 2 | |
| -----------------------TCCCATGGTCCTTAAGACTTT---------------------------------------------------------------------- | 21 | 1 | 1 | |
| ------------------------CCCATGGTCCTTAAGACTTTGT-------------------------------------------------------------------- | 22 | - | 1 | |
| ----------------TCCTGTGTCCCATGGTCCT------------------------------------------------------------------------------- | 19 | - | 1 | |
| -----------------------TCCCATGGTCCTTAAGAC------------------------------------------------------------------------- | 18 | - | 1 | |
| -----------------------TCCCATGGTCCTTAAGACTTTGT-------------------------------------------------------------------- | 23 | - | 1 | |
| rat | gagtcgaaggcgttgcTCCTGTGTCCCATGGTCCTTAAGACTTTGTATTGAGAgtggaattttccctcatcagaaattctgctgagggctagggtgtggggtctgctctttact | |||
| ****************************************************************************************************************** | ||||
| rat | .(((.(((((((..(((((.....(((.((((((((((((.(((...(((((((.(((....)))))).))))))).)))..))))))))))))...))))).))).))))))) | 0.910 -37.90 | ||
| rat | chromosome:1:48278116:48278229:-1 | intergenic |
block958679 [novel_lenNOK_cloningOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.056 | no | no | 0.36/0.58 | 18/25/0.64 | 0.0 1.2 | 0.0 2.5 | 1 10 | 0 0 | 1 2 | 0 0 | 16 23 | 23 5 | 5arm 5arm | 24 24 | nd nd | 0.32 0.11 | 5 1 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------CCCAUGG----------------------------------------------------------------------------------- | 4 | novel | |
| seed | -------------------------CCAUGGU---------------------------------------------------------------------------------- | 4 | novel | |
| seed | -----------------------------GGUCCUU------------------------------------------------------------------------------ | 2 | novel | |
| seed | -----------------CCUGUGU------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------CCCATGGTCCTTAAGACTTT---------------------------------------------------------------------- | 20 | - | 3 | |
| ----------------------------TGGTCCTTAAGACTTTGTATTGAGA------------------------------------------------------------- | 25 | - | 2 | |
| -----------------------TCCCATGGTCCTTAAGACTTT---------------------------------------------------------------------- | 21 | 1 | 1 | |
| ------------------------CCCATGGTCCTTAAGACTTTGT-------------------------------------------------------------------- | 22 | - | 1 | |
| ----------------TCCTGTGTCCCATGGTCCT------------------------------------------------------------------------------- | 19 | - | 1 | |
| -----------------------TCCCATGGTCCTTAAGAC------------------------------------------------------------------------- | 18 | - | 1 | |
| -----------------------TCCCATGGTCCTTAAGACTTTGT-------------------------------------------------------------------- | 23 | - | 1 | |
| rat | gagtcgaaggcgttgcTCCTGTGTCCCATGGTCCTTAAGACTTTGTATTGAGAgtggaattttccctcatcagaaattctgctgagggctagggtgtggggtctgctctttact | |||
| ****************************************************************************************************************** | ||||
| rat | .(((.(((((((..(((((.....(((.((((((((((((.(((...(((((((.(((....)))))).))))))).)))..))))))))))))...))))).))).))))))) | 0.910 -37.90 | ||
| rat | chromosome:1:47744053:47744166:1 | intergenic |
block959241 [novel_lenNOK_cloningOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.015 | no | no | 0.36/0.58 | 18/25/0.64 | 0.0 1.2 | 0.0 2.5 | 1 10 | 0 0 | 1 2 | 0 0 | 16 23 | 23 5 | 5arm 5arm | 24 24 | nd nd | 0.32 0.11 | 5 1 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------CCCAUGG----------------------------------------------------------------------------------- | 4 | novel | |
| seed | -------------------------CCAUGGU---------------------------------------------------------------------------------- | 4 | novel | |
| seed | -----------------------------GGUCCUU------------------------------------------------------------------------------ | 2 | novel | |
| seed | -----------------CCUGUGU------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------CCCATGGTCCTTAAGACTTT---------------------------------------------------------------------- | 20 | - | 3 | |
| ----------------------------TGGTCCTTAAGACTTTGTATTGAGA------------------------------------------------------------- | 25 | - | 2 | |
| -----------------------TCCCATGGTCCTTAAGACTTT---------------------------------------------------------------------- | 21 | 1 | 1 | |
| ------------------------CCCATGGTCCTTAAGACTTTGT-------------------------------------------------------------------- | 22 | - | 1 | |
| ----------------TCCTGTGTCCCATGGTCCT------------------------------------------------------------------------------- | 19 | - | 1 | |
| -----------------------TCCCATGGTCCTTAAGAC------------------------------------------------------------------------- | 18 | - | 1 | |
| -----------------------TCCCATGGTCCTTAAGACTTTGT-------------------------------------------------------------------- | 23 | - | 1 | |
| rat | gagtcgaaggcgttgcTCCTGTGTCCCATGGTCCTTAAGACTTTGTATTGAGAgtggaattttccctcatcagaaattctgctgagggctagggtgtggagtctgctctttact | |||
| ****************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | |||
| rat | .(((.(((((((..(((((.....(((.((((((((((((.(((...(((((((.(((....)))))).))))))).)))..))))))))))))...))))).))).))))))) | 0.910 -38.80 | ||
| rat | chromosome:1:47864629:47864742:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
block959651 [novel_lenNOK_cloningOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.047 | no | no | 0.36/0.58 | 18/25/0.64 | 0.0 1.2 | 0.0 2.5 | 1 10 | 0 0 | 1 2 | 0 0 | 16 23 | 23 5 | 5arm 5arm | 24 24 | nd nd | 0.32 0.10 | 5 1 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------CCCAUGG----------------------------------------------------------------------------------- | 4 | novel | |
| seed | -------------------------CCAUGGU---------------------------------------------------------------------------------- | 4 | novel | |
| seed | -----------------------------GGUCCUU------------------------------------------------------------------------------ | 2 | novel | |
| seed | -----------------CCUGUGU------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------CCCATGGTCCTTAAGACTTT---------------------------------------------------------------------- | 20 | - | 3 | |
| ----------------------------TGGTCCTTAAGACTTTGTATTGAGA------------------------------------------------------------- | 25 | - | 2 | |
| -----------------------TCCCATGGTCCTTAAGACTTT---------------------------------------------------------------------- | 21 | 1 | 1 | |
| ------------------------CCCATGGTCCTTAAGACTTTGT-------------------------------------------------------------------- | 22 | - | 1 | |
| ----------------TCCTGTGTCCCATGGTCCT------------------------------------------------------------------------------- | 19 | - | 1 | |
| -----------------------TCCCATGGTCCTTAAGAC------------------------------------------------------------------------- | 18 | - | 1 | |
| -----------------------TCCCATGGTCCTTAAGACTTTGT-------------------------------------------------------------------- | 23 | - | 1 | |
| rat | gagtcgaaggtgttgcTCCTGTGTCCCATGGTCCTTAAGACTTTGTATTGAGAttggaattttccctcatcagaaattctgctgagggctagggtgtggggtctgctctttact | |||
| ****************************************************************************************************************** | ||||
| rat | .(((.(((((.((.(((((.....(((.((((((((((((.((((...((((...(((....))))))).))))...)))..))))))))))))...)))))..)))))))))) | 0.890 -34.80 | ||
| rat | chromosome:1:47984312:47984425:1 | intergenic |
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