other hairpins
novel_lenNOK_cloningOK_Multihit_5varHIGH (10 loci)
novel_lenNOK_cloningOK_shortStem_5varHIGH (10 loci)
block61839 [novel_lenNOK_cloningOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.244 | no | no | 0.61/0.83 | 18/24/0.47 | 2.1 | 2.2 | 17 | 0 | 8 | 0 | 3 | 21 | 3arm | 1 | nd | 0.28 | 3 | 17 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -------------------------------------------------------------------------------------------ACGCGCG------------------ | 4 | novel | |||||||
| seed | ----------------------------------------------------------------------------------------GGGACGC--------------------- | 3 | novel | |||||||
| seed | -----------------------------------------------------------------------------------------GGACGCG-------------------- | 3 | novel | |||||||
| seed | ---------------------------------------------------------------------------------------------GCGCGGU---------------- | 3 | novel | |||||||
| seed | -------------------------------------------------------------------------------------GGCGGGA------------------------ | 2 | novel | |||||||
| seed | ---------------------------------------------------------------------------------------CGGGACG---------------------- | 2 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------------------------CGCGCGGTGAAGCCAGAT------ | 18 | 2 | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------------------------GACGCGCGGTGAAGCCAG-------- | 18 | - | 1 | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------------------------GGGACGCGCGGTGAAGCCA--------- | 19 | - | - | - | - | 2 | - | - | - | |
| ------------------------------------------------------------------------------------------GACGCGCGGTGAAGCCAGATT----- | 21 | - | - | - | - | 1 | - | - | - | |
| ------------------------------------------------------------------------------------GGGCGGGACGCGCGGTGAAG------------ | 20 | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------------------------------CGGGACGCGCGGTGAAGCCAGA------- | 22 | - | - | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------------------GGGCGGGACGCGCGGTGA-------------- | 18 | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------------------------------GGGACGCGCGGTGAAGCC---------- | 18 | - | - | - | - | - | 1 | - | - | |
| ------------------------------------------------------------------------------------------GACGCGCGGTGAAGCCAGATTAG--- | 23 | - | 1 | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------------------CGGGACGCGCGGTGAAGCCAGATT----- | 24 | - | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------------------------GCGGGACGCGCGGTGAAGCC---------- | 20 | - | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------------------------------CGGGACGCGCGGTGAAGCCA--------- | 20 | - | - | - | - | 1 | - | - | - | |
| --------------------------------------------------------------------------------------GCGGGACGCGCGGTGAAGCCA--------- | 21 | - | - | - | 1 | - | - | - | - | |
| rat | tcctcctgtgccgcgcccgggaccgcccccaagaggccacataaaaccgcgctcctccgaaccagcgcgcagcaaaggactggcGGGCGGGACGCGCGGTGAAGCCAGATTAGgat | |||||||||
| ******************************************************************************************************************** | ||||||||||
| ..................................................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000005383 ENSRNOG00000003977 Dusp1 | |||||||||
| rat | ((((.(((((((((((......((((((((.((...((.........((((((..........)))))).......)).)))).))))))...))))))))....)))...)))). | 0.930 -42.79 | ||||||||
| rat | chromosome:10:16942834:16942949:1 | Same_strand|Boundary_non-coding|ENSRNOT00000005383|ENSRNOG00000003977 ## ENSRNOG00000003977|protein_coding|Dusp1|Dual specificity protein phosphatase 1 (EC 3.1.3.48) (EC 3.1.3.16) (MAP kinase phosphatase 1) (MKP-1) (Protein-tyrosine phosphatase CL100) (Protein-tyrosine phosphatase non-receptor type 16). [Source:UniProtKB/Swiss-Prot;Acc:Q64623] |
block425984 [novel_lenNOK_cloningOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.328 | no | no | 0.45/0.50 | 18/21/0.47 | 3.1 | 2.2 | 29 | 0 | 4 | 0 | 0 | 7 | 5arm | 1 | nd | 0.26 | 3 | 38 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -GACCACU------------------------------------------------------------------ | 19 | novel | |||
| seed | --------GGACAAA----------------------------------------------------------- | 18 | novel | |||
| seed | ------CUGGACA------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| -------TGGACAAATGGACTACGGA------------------------------------------------ | 19 | - | 1 | - | 16 | |
| TGACCACTGGACAAATGGACT----------------------------------------------------- | 21 | 2 | - | - | 13 | |
| TGACCACTGGACAAATGGAC------------------------------------------------------ | 20 | - | - | - | 2 | |
| -------TGGACAAATGGACTACGGAT----------------------------------------------- | 20 | - | - | - | 1 | |
| TGACCACTGGACAAATGGA------------------------------------------------------- | 19 | - | - | - | 1 | |
| TGACCACTGGACAAATGG-------------------------------------------------------- | 18 | - | - | 1 | - | |
| -----ACTGGACAAATGGACTACG-------------------------------------------------- | 19 | - | - | - | 1 | |
| rat | TGACCACTGGACAAATGGACTACGGAtccaggggaggggctgtggattctgtgactcaccatctctccaatgtc | |||||
| ************************************************************************** | ||||||
| rat | .(((...((((...((((..((((((((((.((......)).))))).))))).....))))...))))..))) | 0.650 -20.80 | ||||
| rat | chromosome:15:254932:255005:-1 | intergenic |
block604511 [novel_lenNOK_cloningOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.080 | no | no | 0.61/0.67 | 18/19/0.00 | 1.2 | 0.5 | 11 | 0 | 6 | 0 | 4 | 14 | 5arm | 1 | nd | 0.21 | 1 | 11 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -------CCGAGUG---------------------------------------------------------------------------- | 5 | novel | |||||
| seed | ------CCCGAGU----------------------------------------------------------------------------- | 3 | novel | |||||
| seed | -----GCCCGAG------------------------------------------------------------------------------ | 3 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T2S2 | T3S2 | T5S1 | T5S2 | |||
| ------CCCGAGTGTTACAGCCCT------------------------------------------------------------------ | 18 | 1 | 1 | 1 | 1 | - | 1 | |
| ----AGCCCGAGTGTTACAGCCC------------------------------------------------------------------- | 19 | - | 2 | - | - | 1 | - | |
| -----GCCCGAGTGTTACAGCCC------------------------------------------------------------------- | 18 | - | 1 | - | - | 1 | 1 | |
| rat | ctggAGCCCGAGTGTTACAGCCCTgtgaaggaaaggcaggtggtgtgcaggcagggatgggaggctgagaaaaggagggagggctgagga | |||||||
| ****************************************************************************************** | ||||||||
| ---------------------------------------------------------------------------------------------------- | ENSRNOT00000060550 ENSRNOG00000026564 NP_001099574.1 | |||||||
| ---------------------------------------------------------------------------------------------------- | ENSRNOT00000038218 ENSRNOG00000026564 NP_001099574.1 | |||||||
| rat | ((..(((((.(((.((.((.((((((.........(((.......)))..)))))).)).)).)))..............)))))..)). | 0.760 -22.76 | ||||||
| rat | chromosome:17:22059876:22059965:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000060550|ENSRNOG00000026564 ## ENSRNOG00000026564|protein_coding|NP_001099574.1|protein tyrosine phosphatase domain containing 1 [Source:RefSeq_peptide;Acc:NP_001099574] |
block810617 [novel_lenNOK_cloningOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.379 | no | no | 0.53/0.68 | 18/22/0.23 | 0.0 1.6 | 1.0 1.6 | 3 19 | 0 0 | 2 8 | 0 0 | 16 0 | 9 16 | 3arm 3arm | 1 1 | 0 8 | 0.21 0.25 | 3 4 | 22 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ------------------------------------------------------------------------AGCCCGA-------------- | 9 | novel | ||||||||
| seed | -----------------------------------------------------------------------AAGCCCG--------------- | 4 | novel | ||||||||
| seed | --------------------------------------------------------GUGUUCG------------------------------ | 3 | novel | ||||||||
| seed | -------------------------------------------------------------------GGAGAAG------------------- | 1 | novel | ||||||||
| seed | ----------------------------------------------------------------------GAAGCCC---------------- | 1 | novel | ||||||||
| seed | ---------------------------------------------------------------------AGAAGCC----------------- | 1 | novel | ||||||||
| seed | -------------------------------------------------------------------------GCCCGAA------------- | 1 | novel | ||||||||
| seed | ---------------------------------------------------------------CUGAGGA----------------------- | 1 | novel | ||||||||
| seed | ------------------------------------------------------------------AGGAGAA-------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------AAGCCCGAAACGGACCCGT--- | 19 | - | - | - | - | 2 | 1 | - | - | 1 | |
| -----------------------------------------------------------------------AAGCCCGAAACGGACCCG---- | 18 | - | - | 1 | - | 3 | - | - | - | - | |
| ----------------------------------------------------------------------GAAGCCCGAAACGGACCC----- | 18 | - | - | - | - | - | - | - | - | 2 | |
| -------------------------------------------------------AGTGTTCGCTGAGGAGAAG------------------- | 19 | - | - | - | - | - | - | - | 2 | - | |
| --------------------------------------------------------------GCTGAGGAGAAGCCCGAAAC----------- | 20 | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------AGCCCGAAACGGACCCGT--- | 18 | - | - | 1 | - | - | - | - | - | - | |
| ------------------------------------------------------------------AGGAGAAGCCCGAAACGGAC------- | 20 | - | - | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------------------GAGAAGCCCGAAACGGACC------ | 19 | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------------GAAGCCCGAAACGGACCCGT--- | 20 | - | - | 1 | - | - | - | - | - | - | |
| -----------------------------------------------------------------------AAGCCCGAAACGGACCCGTTGG | 22 | - | - | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------------AGAAGCCCGAAACGGACCC----- | 19 | - | 1 | - | - | - | - | - | - | - | |
| -------------------------------------------------------AGTGTTCGCTGAGGAGAAGCCC---------------- | 22 | - | - | - | - | 1 | - | - | - | - | |
| ----------------------------------------------------------------------GAAGCCCGAAACGGACCCG---- | 19 | - | - | - | - | 1 | - | - | - | - | |
| -----------------------------------------------------------------GAGGAGAAGCCCGAAACG---------- | 18 | - | - | - | 1 | - | - | - | - | - | |
| rat | cgagggggcggggctcagattcctgtcagcggcggcggcggtggcggcggccgtcAGTGTTCGCTGAGGAGAAGCCCGAAACGGACCCGTTGG | ||||||||||
| ********************************************************************************************* | |||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000016927 ENSRNOG00000011879 NP_001100895.1 | ||||||||||
| rat | (((.(((.(((((((....((((..((((((((((((((.((....)).)))))).))...)))))))))).)))))....))..))).))). | 0.920 -41.50 | |||||||||
| rat | chromosome:19:37154766:37154858:1 | Same_strand|Boundary_non-coding|ENSRNOT00000016927|ENSRNOG00000011879 ## ENSRNOG00000011879|protein_coding|NP_001100895.1|nuclear factor of activated T-cells 5 [Source:RefSeq_peptide;Acc:NP_001100895] ## {SimpF: oe = 0.91 1 CpG} |
block1067073 [novel_lenNOK_cloningOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.026 | no | no | 0.53/0.63 | 18/25/0.41 | 2.1 0.0 | 1.5 0.0 | 16 1 | 0 0 | 2 1 | 0 0 | 3 0 | 3 13 | 3arm 3arm | 1 1 | nd nd | 0.28 0.33 | 3 5 | 17 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------GCCUGAG--------------------- | 7 | novel | |
| seed | ---------------------------------------------GAGCAUA----------------- | 5 | novel | |
| seed | ----------------------------------------------AGCAUAG---------------- | 3 | novel | |
| seed | ---------------------------------------------------AGGGGUG----------- | 1 | novel | |
| seed | -----------------------------------------------GCAUAGG--------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------TGAGCATAGGGGTGAGTCA------ | 19 | 1 | 2 | |
| ----------------------------------------TGCCTGAGCATAGGGGTGAGTCA------ | 23 | 1 | 1 | |
| ---------------------------------------------GAGCATAGGGGTGAGTCAG----- | 19 | - | 2 | |
| --------------------------------------------TGAGCATAGGGGTGAGTCAG----- | 20 | - | 1 | |
| ----------------------------------------TGCCTGAGCATAGGGGTGAGTCAGT---- | 25 | 1 | - | |
| ----------------------------------------------AGCATAGGGGTGAGTCAG----- | 18 | - | 1 | |
| --------------------------------------------------TAGGGGTGAGTCAGTGGGG | 19 | - | 1 | |
| ----------------------------------------TGCCTGAGCATAGGGGTGA---------- | 19 | - | 1 | |
| --------------------------------------------TGAGCATAGGGGTGAGTCAGTG--- | 22 | - | 1 | |
| ---------------------------------------------GAGCATAGGGGTGAGTCAGT---- | 20 | - | 1 | |
| ----------------------------------------TGCCTGAGCATAGGGGTG----------- | 18 | - | 1 | |
| ----------------------------------------TGCCTGAGCATAGGGGTGAG--------- | 20 | - | 1 | |
| ----------------------------------------TGCCTGAGCATAGGGGTGAGTCAG----- | 24 | - | 1 | |
| rat | ctccctgtccctgtgtagagcagggaggggtggggcgtccTGCCTGAGCATAGGGGTGAGTCAGTGGGG | |||
| ********************************************************************* | ||||
| rat | ((((((((((((((((....((((.((((........)))).)))).))))))))).....))).)))) | 0.590 -30.50 | ||
| rat | chromosome:20:13194991:13195059:-1 | intergenic |
block1723160 [novel_lenNOK_cloningOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.302 | no | no | 0.37/0.48 | 18/22/0.23 | 1.7 | 2.1 | 21 | 0 | 4 | 0 | 4 | 7 | 5arm | 1 | nd | 0.19 | 2 | 31 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----AAGUACU---------------------------------------------------------------------------- | 18 | novel | |||
| seed | ------------AGACAAC--------------------------------------------------------------------- | 7 | novel | |||
| seed | ---------ACUAGAC------------------------------------------------------------------------ | 5 | novel | |||
| seed | ------AGUACUA--------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S1 | |||
| ----TAAGTACTAGACAACCAAC----------------------------------------------------------------- | 19 | 2 | - | - | 16 | |
| -----------TAGACAACCAACGGGATTCAG-------------------------------------------------------- | 21 | 1 | - | - | 5 | |
| --------TACTAGACAACCAACGGGA------------------------------------------------------------- | 19 | - | 1 | - | 4 | |
| -----AAGTACTAGACAACCAACGGGA------------------------------------------------------------- | 22 | - | - | 1 | - | |
| -----------TAGACAACCAACGGGATT----------------------------------------------------------- | 18 | - | - | - | 1 | |
| rat | ctttTAAGTACTAGACAACCAACGGGATTCAGgtacctcgcagaagaggatgtggtccccacttgtgcgtatatgtctgtggttttag | |||||
| **************************************************************************************** | ||||||
| -------------------------------------------------------------------------------------------------- | ENSRNOT00000047859 ENSRNOG00000024953 LOC678820 | |||||
| rat | .....((.(((.(((((((((..((((.(((.((.((((......)))))).)))))))......)).))...)))))))).)).... | 0.580 -22.30 | ||||
| rat | chromosome:5:25427648:25427735:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000041129|ENSRNOG00000024953 ## Opposite_strand|Intronic_coding|ENSRNOT00000047859|ENSRNOG00000024953 ## ENSRNOG00000024953|protein_coding|LOC678820| |
block1973337 [novel_lenNOK_cloningOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.611 | no | no | 0.32/0.58 | 19/24/0.63 | 2.5 0.0 | 1.5 0.0 | 13 1 | 0 0 | 1 1 | 0 0 | 1 19 | 17 8 | 5arm 5arm | 1 1 | nd nd | 0.35 0.21 | 4 3 | 19 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------UUCAAAG---------------------------------------------------------------------------------------- | 7 | novel | |
| seed | --GUUCUUA------------------------------------------------------------------------------------------------ | 3 | novel | |
| seed | -----------UCAAAGG--------------------------------------------------------------------------------------- | 3 | novel | |
| seed | -------UAUUUCA------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | --------AUUUCAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | -----CUUAUUU--------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----UCUUAUU---------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------GCGUGCU------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ---------TTTCAAAGGTTGCGTGCTTC---------------------------------------------------------------------------- | 20 | - | 5 | |
| ----------TTCAAAGGTTGCGTGCTTC---------------------------------------------------------------------------- | 19 | - | 3 | |
| -TGTTCTTATTTCAAAGGTTGCGTG-------------------------------------------------------------------------------- | 24 | - | 3 | |
| ------TTATTTCAAAGGTTGCGTG-------------------------------------------------------------------------------- | 19 | - | 2 | |
| -------------------TGCGTGCTTCCGGGACAAA------------------------------------------------------------------- | 19 | 1 | - | |
| ---------TTTCAAAGGTTGCGTGCTTCCGGG------------------------------------------------------------------------ | 24 | - | 1 | |
| ---------TTTCAAAGGTTGCGTGCTTCC--------------------------------------------------------------------------- | 21 | - | 1 | |
| ----TCTTATTTCAAAGGTTGCGTG-------------------------------------------------------------------------------- | 21 | - | 1 | |
| -------TATTTCAAAGGTTGCGTGCTTCC--------------------------------------------------------------------------- | 23 | - | 1 | |
| ---TTCTTATTTCAAAGGTTGC----------------------------------------------------------------------------------- | 19 | - | 1 | |
| rat | gTGTTCTTATTTCAAAGGTTGCGTGCTTCcgggacaaaatagcaagtttctcttgtaatttctgtgctgtgacaaattattataaaggcttcaatagagatgcac | |||
| ********************************************************************************************************* | ||||
| rat | ((((....(((((....((((...((((((((.(((((((.(((((.....))))).)))).))).))).))..............)))..)))).))))))))) | 0.510 -19.23 | ||
| rat | chromosome:6:122571784:122571888:-1 | intergenic |
block1973428 [novel_lenNOK_cloningOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.587 | no | no | 0.33/0.42 | 18/26/0.50 | 1.3 | 1.4 | 14 | 0 | 4 | 0 | 2 | 22 | 3arm | 1 | nd | 0.25 | 3 | 14 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------------------------------------AGCAGCA-------------------- | 7 | miR-15b/16/195/322/497 | |||
| seed | --------------------------------------------------------------------------------GAAGCAG---------------------- | 5 | novel | |||
| seed | -----------------------------------------------------------------------------------GCAGCAA------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------------------------AAGCAGC--------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S2 | T4S2 | T5S1 | |||
| -------------------------------------------------------------------------------TGAAGCAGCAAGTCTTTTCA---------- | 20 | - | - | 2 | 3 | |
| ---------------------------------------------------------------------------------AAGCAGCAAGTCTTTTCA---------- | 18 | - | - | - | 2 | |
| ---------------------------------------------------------------------------------AAGCAGCAAGTCTTTTCAT--------- | 19 | 1 | - | - | 1 | |
| ---------------------------------------------------------------------------------AAGCAGCAAGTCTTTTCATATACA---- | 24 | - | - | - | 1 | |
| ----------------------------------------------------------------------------------AGCAGCAAGTCTTTTCATA-------- | 19 | - | - | - | 1 | |
| ---------------------------------------------------------------------------------AAGCAGCAAGTCTTTTCATATACAGG-- | 26 | - | - | - | 1 | |
| ---------------------------------------------------------------------------------AAGCAGCAAGTCTTTTCATA-------- | 20 | - | - | - | 1 | |
| --------------------------------------------------------------------------------GAAGCAGCAAGTCTTTTCA---------- | 19 | - | 1 | - | - | |
| rat | ggttttagctgttggattatgtgctttcatgtgcattgacttgactatatatgcccgtgtgtataaatgcactcccactTGAAGCAGCAAGTCTTTTCATATACAGGcc | |||||
| ************************************************************************************************************* | ||||||
| rat | (((((((..((..(((((.((((((((...(((((((........((((((((....)))))))))))))))........)))))).)))))))...))..)).))))) | 0.690 -21.60 | ||||
| rat | chromosome:6:122574679:122574787:-1 | intergenic |
block1167340 [novel_lenNOK_cloningOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.372 | no | no | 0.37/0.50 | 18/25/0.15 | 1.5 | 3.0 | 13 | 0 | 5 | 0 | 2 | 18 | 5arm | 2 | nd | 0.11 | 1 | 13 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ---GAGAGAC---------------------------------------------------------------------------------- | 5 | novel | ||||
| seed | ----AGAGACU--------------------------------------------------------------------------------- | 5 | novel | ||||
| seed | -------GACUUGC------------------------------------------------------------------------------ | 1 | novel | ||||
| seed | --------ACUUGCC----------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ---------CUUGCCA---------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S2 | T5S1 | T5S2 | |||
| ---GAGAGACTTGCCAAAGAG----------------------------------------------------------------------- | 18 | - | 1 | 1 | - | 1 | |
| --TGAGAGACTTGCCAAAGAG----------------------------------------------------------------------- | 19 | - | 1 | - | 2 | - | |
| ---GAGAGACTTGCCAAAGAGTTGTTT----------------------------------------------------------------- | 24 | 1 | - | - | 1 | - | |
| --TGAGAGACTTGCCAAAGAGTTGTTT----------------------------------------------------------------- | 25 | 1 | - | - | 1 | - | |
| -------GACTTGCCAAAGAGTTGTT------------------------------------------------------------------ | 19 | - | - | - | 1 | - | |
| ------AGACTTGCCAAAGAGTTGT------------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| --------ACTTGCCAAAGAGTTGTTT----------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| rat | cgTGAGAGACTTGCCAAAGAGTTGTTTattggtactggtggagtttgataattcccaccaagctgctctttacttggtgctggttgggttat | ||||||
| ******************************************************************************************** | |||||||
| rat | .((((..((((.((((((((((.(((.........((((((((((....)))))).))))))).))))))....))))...))))...)))) | 0.940 -22.30 | |||||
| rat | chromosome:2:105729655:105729746:-1 | intergenic |
block1093930 [novel_lenNOK_cloningOK_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.311 | no | no | 0.33/0.45 | 18/23/0.53 | 3.3 | 2.6 | 15 | 0 | 3 | 0 | 1 | 4 | 3arm | 1 | nd | 0.20 | 2 | 15 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------GAGCCCU-------------------- | 8 | novel | ||
| seed | ----------------------------------------------------AGUAGAG------------- | 7 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S2 | T5S1 | |||
| --------------------------------------------TGAGCCCTAGTAGAGAATGTTCT----- | 23 | - | - | 3 | |
| ---------------------------------------------------TAGTAGAGAATGTTCTAGG-- | 19 | 1 | - | 2 | |
| --------------------------------------------TGAGCCCTAGTAGAGAAT---------- | 18 | - | - | 2 | |
| ---------------------------------------------------TAGTAGAGAATGTTCTAG--- | 18 | - | 1 | 1 | |
| ---------------------------------------------------TAGTAGAGAATGTTCTAGGC- | 20 | - | - | 2 | |
| --------------------------------------------TGAGCCCTAGTAGAGAATGT-------- | 20 | - | - | 2 | |
| --------------------------------------------TGAGCCCTAGTAGAGAATGTT------- | 21 | - | - | 1 | |
| rat | aggactctctggcattgctgctggcttgggagaagggggcctgcTGAGCCCTAGTAGAGAATGTTCTAGGCc | ||||
| ************************************************************************ | |||||
| rat | .((...((..((((((.((((((((((((.((........)).)))))))..)))))..))))))..)).)) | 0.740 -22.60 | |||
| rat | chromosome:20:5552892:5552963:1 | intergenic |
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