other hairpins
novel_lenNOK_cloningOK_shortStem_5varHIGH (10 loci)
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH (10 loci)
sblock11336 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.241 | no | no | 0.33/0.53 | 18/23/0.33 | 1.3 1.0 | 0.0 0.7 | 3 3 | 0 0 | 2 3 | 0 0 | 14 17 | 7 3 | 5arm 3arm | 20 20 | nd nd | 0.37 0.32 | 4 2 | 6 | 3 | 0 | -8 |
| reads | miRBase family seed | ||||
| seed | ---------------AUUCCUA------------------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------------------------------------------UUAUCCU---------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------GUUAUCC----------------------------- | 1 | novel | ||
| seed | -------------------CUACUGG--------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------UAUCCUC--------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S1 | T4S2 | T5S1 | |||
| --------------AATTCCTACTGGGTTGGTGAAGA---------------------------------------------------------- | 23 | - | - | 2 | |
| ------------------CCTACTGGGTTGGTGAAGA---------------------------------------------------------- | 19 | 1 | - | - | |
| -----------------------------------------------------------GTTATCCTCATTGATCCAT----------------- | 19 | 1 | - | - | |
| ------------------------------------------------------------TTATCCTCATTGATCCAT----------------- | 18 | - | 1 | - | |
| ----------------------------------------------------------GGTTATCCTCATTGATCCA------------------ | 19 | - | - | 1 | |
| rat | ctttgagagtcctgAATTCCTACTGGGTTGGTGAAGAttccacatatacattttttgaGGTTATCCTCATTGATCCATtccataaagctaccaga | ||||
| *********************************************************************************************** | |||||
| rat | .((((..(((.............(((((..((((.(((.((.((...........)).))..))).))))..))))).........)))..)))) | 0.480 -17.65 | |||
| rat | chromosome:7:96777523:96777617:1 | intergenic |
sblock1545 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.466 | no | no | 0.48/0.53 | 18/21/0.33 | 0.0 1.5 | 0.0 1.0 | 1 2 | 0 0 | 1 1 | 0 0 | 20 18 | 2 0 | 5arm 3arm | 10 22 | nd nd | 0.33 0.33 | 2 2 | 3 | 1 | -2 | -4 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------UGGUUUG---------------------------- | 1 | novel |
| seed | ---------------------AGCACCG---------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------CUCUGGU------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------TAGCACCGTAGTACAGGTTCA--------------------------------------------- | 21 | 1 | |
| -----------------------------------------------GCTCTGGTTTGTCTTGGGT-------------------- | 19 | 1 | |
| --------------------------------------------------CTGGTTTGTCTTGGGTAC------------------ | 18 | 1 | |
| rat | ttcaggggcatcaaaagtgtTAGCACCGTAGTACAGGTTCAgcatttGCTCTGGTTTGTCTTGGGTACtaaggccaatgtcgatga | ||
| ************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------ | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||
| ------------------------------------------------------------------------------------------------ | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||
| rat | .(((..(((((.....((.((((.(((..((.(((..((.(((....)))..))..)))))..))).)))).))..)))))..))) | 0.910 -20.80 |
| rat | chromosome:1:51825381:51825466:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock163 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.341 | no | no | 0.48/0.53 | 18/21/0.33 | 0.0 1.5 | 0.0 1.0 | 1 2 | 0 0 | 1 1 | 0 0 | 28 27 | 2 0 | 5arm 3arm | 10 22 | nd nd | 0.33 0.33 | 2 2 | 3 | 1 | -2 | -4 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------UGGUUUG------------------------------------- | 1 | novel |
| seed | --------------------------------------------------------CUCUGGU---------------------------------------- | 1 | novel |
| seed | -----------------------------AGCACCG------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------------------------GCTCTGGTTTGTCTTGGGT----------------------------- | 19 | 1 | |
| ----------------------------TAGCACCGTAGTACAGGTTCA------------------------------------------------------ | 21 | 1 | |
| ----------------------------------------------------------CTGGTTTGTCTTGGGTAC--------------------------- | 18 | 1 | |
| rat | aggaagagttcaggggcatcaaaagtgtTAGCACCGTAGTACAGGTTCAgcatttGCTCTGGTTTGTCTTGGGTACtaaggccaatgtcaatgattttgacct | ||
| ******************************************************************************************************* | |||
| rat | (((..(((.(((..(((((.....((.((((.(((..((.(((..((.(((....)))..))..)))))..))).)))).))..)))))..))).)))..))) | 0.950 -25.80 |
| rat | chromosome:1:48999801:48999903:-1 | intergenic |
sblock1686 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.603 | no | no | 0.48/0.53 | 18/21/0.33 | 0.0 1.5 | 0.0 1.0 | 1 2 | 0 0 | 1 1 | 0 0 | 28 26 | 2 0 | 5arm 3arm | 10 22 | nd nd | 0.33 0.33 | 2 2 | 3 | 1 | -2 | -4 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------CUCUGGU--------------------------------------- | 1 | novel |
| seed | -----------------------------------------------------------UGGUUUG------------------------------------ | 1 | novel |
| seed | -----------------------------AGCACCG------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------------------------------CTGGTTTGTCTTGGGTAC-------------------------- | 18 | 1 | |
| -------------------------------------------------------GCTCTGGTTTGTCTTGGGT---------------------------- | 19 | 1 | |
| ----------------------------TAGCACCGTAGTACAGGTTCA----------------------------------------------------- | 21 | 1 | |
| rat | aggaagagttcaggggcatcaaaagtgtTAGCACCGTAGTACAGGTTCAgcatttGCTCTGGTTTGTCTTGGGTACtaaggccaatgtcgatgattttgact | ||
| ****************************************************************************************************** | |||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059908 ENSRNOG00000030267 RGD1561185_predicted | ||
| rat | ((..((((.(((..(((((.....((.((((.(((..((.(((..((.(((....)))..))..)))))..))).)))).))..)))))..)))))))..)) | 0.710 -23.70 |
| rat | chromosome:1:52822448:52822549:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000059908|ENSRNOG00000030267 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059909|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
sblock207 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.370 | no | no | 0.48/0.53 | 18/21/0.33 | 0.0 1.5 | 0.0 1.0 | 1 2 | 0 0 | 1 1 | 0 0 | 4 6 | 2 0 | 5arm 3arm | 10 22 | nd nd | 0.33 0.33 | 2 2 | 3 | 1 | -2 | -4 |
| reads | miRBase family seed | ||
| seed | --------------------------------CUCUGGU------------------- | 1 | novel |
| seed | -----------------------------------UGGUUUG---------------- | 1 | novel |
| seed | -----AGCACCG---------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------GCTCTGGTTTGTCTTGGGT-------- | 19 | 1 | |
| ----------------------------------CTGGTTTGTCTTGGGTAC------ | 18 | 1 | |
| ----TAGCACCGTAGTACAGGTTCA--------------------------------- | 21 | 1 | |
| rat | gtgtTAGCACCGTAGTACAGGTTCAgcacttGCTCTGGTTTGTCTTGGGTACtaaggc | ||
| ********************************************************** | |||
| rat | ((.((((.(((..((.(((..((.(((....)))..))..)))))..))).)))).)) | 0.970 -14.30 |
| rat | chromosome:1:49858405:49858462:-1 | intergenic |
sblock217 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.466 | no | no | 0.48/0.53 | 18/21/0.33 | 0.0 1.5 | 0.0 1.0 | 1 2 | 0 0 | 1 1 | 0 0 | 20 18 | 2 0 | 5arm 3arm | 10 22 | nd nd | 0.33 0.33 | 2 2 | 3 | 1 | -2 | -4 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------UGGUUUG---------------------------- | 1 | novel |
| seed | ---------------------AGCACCG---------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------CUCUGGU------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------TAGCACCGTAGTACAGGTTCA--------------------------------------------- | 21 | 1 | |
| -----------------------------------------------GCTCTGGTTTGTCTTGGGT-------------------- | 19 | 1 | |
| --------------------------------------------------CTGGTTTGTCTTGGGTAC------------------ | 18 | 1 | |
| rat | ttcaggggcatcaaaagtgtTAGCACCGTAGTACAGGTTCAgcatttGCTCTGGTTTGTCTTGGGTACtaaggccaatgtcgatga | ||
| ************************************************************************************** | |||
| rat | .(((..(((((.....((.((((.(((..((.(((..((.(((....)))..))..)))))..))).)))).))..)))))..))) | 0.910 -20.80 |
| rat | chromosome:1:49946635:49946720:-1 | intergenic |
sblock408 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.466 | no | no | 0.48/0.53 | 18/21/0.33 | 0.0 1.5 | 0.0 1.0 | 1 2 | 0 0 | 1 1 | 0 0 | 20 18 | 2 0 | 5arm 3arm | 10 22 | nd nd | 0.33 0.33 | 2 2 | 3 | 1 | -2 | -4 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------UGGUUUG---------------------------- | 1 | novel |
| seed | ---------------------AGCACCG---------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------CUCUGGU------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------TAGCACCGTAGTACAGGTTCA--------------------------------------------- | 21 | 1 | |
| -----------------------------------------------GCTCTGGTTTGTCTTGGGT-------------------- | 19 | 1 | |
| --------------------------------------------------CTGGTTTGTCTTGGGTAC------------------ | 18 | 1 | |
| rat | ttcaggggcatcaaaagtgtTAGCACCGTAGTACAGGTTCAgcatttGCTCTGGTTTGTCTTGGGTACtaaggccaatgtcgatga | ||
| ************************************************************************************** | |||
| rat | .(((..(((((.....((.((((.(((..((.(((..((.(((....)))..))..)))))..))).)))).))..)))))..))) | 0.910 -20.80 |
| rat | chromosome:1:50967562:50967647:-1 | intergenic |
sblock414 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.466 | no | no | 0.48/0.53 | 18/21/0.33 | 0.0 1.5 | 0.0 1.0 | 1 2 | 0 0 | 1 1 | 0 0 | 20 18 | 2 0 | 5arm 3arm | 10 22 | nd nd | 0.33 0.33 | 2 2 | 3 | 1 | -2 | -4 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------UGGUUUG---------------------------- | 1 | novel |
| seed | ---------------------AGCACCG---------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------CUCUGGU------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------TAGCACCGTAGTACAGGTTCA--------------------------------------------- | 21 | 1 | |
| -----------------------------------------------GCTCTGGTTTGTCTTGGGT-------------------- | 19 | 1 | |
| --------------------------------------------------CTGGTTTGTCTTGGGTAC------------------ | 18 | 1 | |
| rat | ttcaggggcatcaaaagtgtTAGCACCGTAGTACAGGTTCAgcatttGCTCTGGTTTGTCTTGGGTACtaaggccaatgtcgatga | ||
| ************************************************************************************** | |||
| rat | .(((..(((((.....((.((((.(((..((.(((..((.(((....)))..))..)))))..))).)))).))..)))))..))) | 0.910 -20.80 |
| rat | chromosome:1:51007355:51007440:-1 | intergenic |
sblock429 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.466 | no | no | 0.48/0.53 | 18/21/0.33 | 0.0 1.5 | 0.0 1.0 | 1 2 | 0 0 | 1 1 | 0 0 | 20 18 | 2 0 | 5arm 3arm | 10 22 | nd nd | 0.33 0.33 | 2 2 | 3 | 1 | -2 | -4 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------UGGUUUG---------------------------- | 1 | novel |
| seed | ---------------------AGCACCG---------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------CUCUGGU------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------TAGCACCGTAGTACAGGTTCA--------------------------------------------- | 21 | 1 | |
| -----------------------------------------------GCTCTGGTTTGTCTTGGGT-------------------- | 19 | 1 | |
| --------------------------------------------------CTGGTTTGTCTTGGGTAC------------------ | 18 | 1 | |
| rat | ttcaggggcatcaaaagtgtTAGCACCGTAGTACAGGTTCAgcatttGCTCTGGTTTGTCTTGGGTACtaaggccaatgtcgatga | ||
| ************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------ | ENSRNOT00000044862 ENSRNOG00000032704 | ||
| rat | .(((..(((((.....((.((((.(((..((.(((..((.(((....)))..))..)))))..))).)))).))..)))))..))) | 0.910 -20.80 |
| rat | chromosome:1:51350676:51350761:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000044862|ENSRNOG00000032704 ## ENSRNOG00000032704|protein_coding|| |
sblock11036 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.892 | no | no | 0.56/0.68 | 18/25/0.50 | 0.0 0.0 2.2 | 0.0 0.0 1.3 | 1 1 6 | 0 0 0 | 1 1 3 | 0 0 0 | 6 16 10 | 15 11 0 | 5arm 5arm 3arm | 38 41 54 | nd nd nd | 0.38 0.61 0.32 | 5 9 3 | 8 | 3 | 0 | 5 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------UGACAUG---------------------------- | 3 | novel | ||
| seed | -----------------CUUCCGU------------------------------------------------------------------ | 1 | novel | ||
| seed | ---------------------------------------------------GAUCUGA-------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------CCGCCUG--------------------- | 1 | novel | ||
| seed | -----------------------------------------------------UCUGACA------------------------------ | 1 | novel | ||
| seed | -------CUGGCAU---------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T4S1 | T5S1 | |||
| ------------------------------------------------------CTGACATGCCGCCTGGAGAAACC------------- | 23 | 2 | - | - | |
| ------------------------------------------------------CTGACATGCCGCCTGGAGAAACCTG----------- | 25 | 1 | - | - | |
| ----------------CCTTCCGTGTTCCTACCC-------------------------------------------------------- | 18 | - | 1 | - | |
| -------------------------------------------------------------GCCGCCTGGAGAAACCTGC---------- | 19 | - | - | 1 | |
| ----------------------------------------------------ATCTGACATGCCGCCTGGAGAAACC------------- | 25 | - | 1 | - | |
| ------ACTGGCATGGCCTTCCGTGTTCCT------------------------------------------------------------ | 24 | - | 1 | - | |
| --------------------------------------------------GGATCTGACATGCCGCCTGGAGAA---------------- | 24 | 1 | - | - | |
| rat | aagctcACTGGCATGGCCTTCCGTGTTCCTACCCccaatgtatccgctgtGGATCTGACATGCCGCCTGGAGAAACCTGCcaagtatgtt | ||||
| ****************************************************************************************** | |||||
| ---------------------------------------------------------------------------------------------------- | ENSRNOT00000022945 ENSRNOG00000017057 LOC678774 | ||||
| rat | .(((..(((((((.((..(((((.((...........((((((((.....))))...))))...)).)))))...))))))).))..))) | 0.470 -18.14 | |||
| rat | chromosome:7:124293894:124293983:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000022945|ENSRNOG00000017057 ## ENSRNOG00000017057|protein_coding|LOC678774| |
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