other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_nonpairedHIGH (10 loci)
novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (10 loci)
sblock11374 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.40/0.54 | 19/26/0.40 | 0.0 0.3 0.0 | 0.0 0.0 0.0 | 1 3 1 | 0 0 0 | 1 2 1 | 0 0 0 | 12 25 9 | 0 -7 7 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.42 0.55 0.37 | 4 7 6 | 5 | 2 | 6 | 3 |
| reads | miRBase family seed | |||
| seed | --------------------------UCAAUAC----------------------------------------------- | 2 | novel | |
| seed | -----------------------------------------------------CUUGAAU-------------------- | 1 | novel | |
| seed | -------------AAGGCCC------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------CAAUACU---------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------------TTCAATACTCCTCACCATTC----------------------------------- | 20 | - | 2 | |
| ----------------------------------------------------TCTTGAATGGGCTGTCTAC--------- | 19 | - | 1 | |
| --------------------------TCAATACTCCTCACCATTC----------------------------------- | 19 | 1 | - | |
| ------------TAAGGCCCACGGCTTCAATACTCCTC------------------------------------------ | 26 | - | 1 | |
| rat | aacagcaaggaaTAAGGCCCACGGCTTCAATACTCCTCACCATTCggggcacTCTTGAATGGGCTGTCTACccttgctgt | |||
| ******************************************************************************** | ||||
| rat | .(((((((((.....((((((....(((((....((((.......)))).....)))))))))))......))))))))) | 0.440 -30.10 | ||
| rat | chromosome:7:112746483:112746562:1 | intergenic |
sblock174 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.29/0.42 | 19/21/0.14 | 0.0 0.0 | 0.0 0.0 | 6 1 | 0 0 | 1 1 | 0 0 | 16 21 | -4 -10 | 5arm_loop 3arm_loop | 7 7 | nd nd | 0.47 0.52 | 5 9 | 7 | 1 | 0 | -22 |
| reads | miRBase family seed | ||
| seed | -----------------CUGUGAC-------------------------------------------------- | 6 | novel |
| seed | ---------------------------------AUAUUUC---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------TCTGTGACTGTCAACCTAT--------------------------------------- | 19 | 6 | |
| --------------------------------TATATTTCGTGTTGACTATCA--------------------- | 21 | 1 | |
| rat | gaggtacatcacctcaTCTGTGACTGTCAACCTATatttcgtgttgactatcattaagaggctaagtggtcctc | ||
| ************************************************************************** | |||
| ------------------------------------------------------------------------------------ | ENSRNOT00000045258 ENSRNOG00000033713 | ||
| --------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<< | ENSRNOT00000043557 ENSRNOG00000033713 | ||
| -----------------------------------------------------------------<<<<<<<<<<<<<<<<<<< | ENSRNOT00000051032 ENSRNOG00000033713 | ||
| rat | ((((..(((..((((....((((..((((((...........))))))..))))...))))....)))..)))) | 0.900 -21.40 |
| rat | chromosome:1:49024758:49024831:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000051032|ENSRNOG00000033713 ## ENSRNOG00000033713|protein_coding|| |
sblock3306 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.38/0.58 | 18/22/0.45 | 0.0 0.0 0.0 0.0 0.0 | 2.0 0.0 0.5 1.5 1.0 | 2 2 2 2 3 | 0 0 0 0 0 | 1 1 1 1 1 | 0 0 0 0 0 | 5 31 13 6 0 | 16 -7 11 16 23 | 5arm 5arm_loop_3arm 3arm 3arm 3arm | 4 4 4 4 4 | nd nd nd nd nd | 0.45 0.47 0.35 0.45 0.42 | 10 5 7 7 5 | 11 | 1 | 0 | 0 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------UGGAAGG------------- | 3 | novel |
| seed | -----------------------------------------------------------GGCACAA------------------------- | 2 | novel |
| seed | ------GCCUUCU------------------------------------------------------------------------------ | 2 | novel |
| seed | --------------------------------GGUCUUG---------------------------------------------------- | 2 | novel |
| seed | ----------------------------------------------------------------AAAUACU-------------------- | 2 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------TGGTCTTGGCCATGTGTGG----------------------------------------- | 19 | 2 | |
| ----------------------------------------------------------TGGCACAAATACTTGGAAG-------------- | 19 | 1 | |
| -----TGCCTTCTCTTTCACTTG-------------------------------------------------------------------- | 18 | 1 | |
| ----------------------------------------------------------------------TTGGAAGGTGTGAGTAAAGA- | 20 | 1 | |
| ----------------------------------------------------------TGGCACAAATACTTGGAAGG------------- | 20 | 1 | |
| ---------------------------------------------------------------CAAATACTTGGAAGGTGTG--------- | 19 | 1 | |
| ----------------------------------------------------------------------TTGGAAGGTGTGAGTAAAGAA | 21 | 1 | |
| -----TGCCTTCTCTTTCACTTGTGTG---------------------------------------------------------------- | 22 | 1 | |
| ---------------------------------------------------------------CAAATACTTGGAAGGTGTGAGT------ | 22 | 1 | |
| ----------------------------------------------------------------------TTGGAAGGTGTGAGTAAAG-- | 19 | 1 | |
| rat | acttcTGCCTTCTCTTTCACTTGTGTGccatTGGTCTTGGCCATGTGTGGcccacggtTGGCACAAATACTTGGAAGGTGTGAGTAAAGAA | ||
| ******************************************************************************************* | |||
| rat | ((((..(((((((..........((((((((((.....(((((....)))))..)))).)))))).......)))))))..))))...... | 0.990 -31.53 |
| rat | chromosome:12:44281225:44281315:-1 | intergenic |
sblock3376 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.43/0.47 | 19/23/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 23 9 | -2 12 | 5arm_loop 3arm | 1 1 | nd nd | 0.39 0.42 | 6 4 | 2 | 1 | 0 | 13 |
| reads | miRBase family seed | ||
| seed | ------------------------ACAAAUU-------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------GACAGUC-------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------------------------------TGACAGTCTCTAGGGGTTT--------- | 19 | 1 | |
| -----------------------TACAAATTCAACACCTCCTGGAG----------------------------------------- | 23 | 1 | |
| rat | aattttccaaagccaaaatgagtTACAAATTCAACACCTCCTGGAGtccaggggtgtgtTGACAGTCTCTAGGGGTTTgggttgtta | ||
| *************************************************************************************** | |||
| rat | (((..((((((.((.....(((........((((((((((((((...))))))).)))))))....)))...)).))))))..))). | 0.990 -33.10 |
| rat | chromosome:12:5601354:5601440:1 | intergenic |
sblock3710 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.44/0.56 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 13 | -1 -3 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.33 0.44 | 4 3 | 2 | 1 | -2 | -4 |
| reads | miRBase family seed | ||
| seed | ----------------------------------CCUUUGG----------------------- | 1 | novel |
| seed | -----------GGGAACU---------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------TGGGAACTAAGTGCAGAA------------------------------------ | 18 | 1 | |
| ---------------------------------TCCTTTGGCCCACCCATT------------- | 18 | 1 | |
| rat | agatggagtgTGGGAACTAAGTGCAGAAtatttTCCTTTGGCCCACCCATTcccacacaccact | ||
| **************************************************************** | |||
| rat | ...(((.(((((((((....(((((((.........))))...)))...))))))))).))).. | 0.600 -19.60 |
| rat | chromosome:13:35173556:35173619:-1 | intergenic |
sblock4116 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.50/0.67 | 18/24/0.67 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 14 23 | -4 -4 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.54 0.50 | 5 4 | 3 | 1 | 0 | -7 |
| reads | miRBase family seed | ||
| seed | ---------------CACCACC-------------------------------------------------------- | 2 | novel |
| seed | --------------------------------------UCCUGGC--------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| --------------CCACCACCTCTGCTCAGCCACCCA---------------------------------------- | 24 | 2 | |
| -------------------------------------ATCCTGGCTACCTCAAAG----------------------- | 18 | 1 | |
| rat | gtcatctcagaaccCCACCACCTCTGCTCAGCCACCCATCCTGGCTACCTCAAAGctatggggcactacttcctgaca | ||
| ****************************************************************************** | |||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000043223 ENSRNOG00000006400 Tbc1d14 | ||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000058414 ENSRNOG00000006400 Tbc1d14 | ||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000008579 ENSRNOG00000006400 Tbc1d14 | ||
| rat | ((((....((..(((((....((.((...(((((.......)))))....)).))...)))))..))......)))). | 0.840 -17.30 |
| rat | chromosome:14:79836422:79836499:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000043223|ENSRNOG00000006400 ## ENSRNOG00000006400|protein_coding|Tbc1d14|TBC1 domain family, member 14 isoform 2 [Source:RefSeq_peptide;Acc:NP_001029193] |
sblock7784 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.67/0.71 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 14 21 | -3 -3 | 5arm_loop 3arm_loop | 1 2 | nd nd | 0.44 0.52 | 4 7 | 2 | 2 | 0 | -2 |
| reads | miRBase family seed | |||
| seed | -------------------------------CAGGCCC---------------------------------- | 1 | novel | |
| seed | ---------------CCUGCUA-------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| --------------GCCTGCTACAGTCCCCAC---------------------------------------- | 18 | 1 | - | |
| ------------------------------ACAGGCCCTGGCTCCCTGCAG--------------------- | 21 | - | 1 | |
| rat | accagagagctgagGCCTGCTACAGTCCCCACAGGCCCTGGCTCCCTGCAGgcctccccatccgccctctgg | |||
| ************************************************************************ | ||||
| rat | .((((((.((.(((((((((..(((..((....))..))).......))))))))).......)).)))))) | 0.960 -32.20 | ||
| rat | chromosome:3:159229570:159229641:-1 | intergenic |
sblock7786 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.63/0.85 | 18/20/0.25 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 49 59 64 16 | 10 -1 -4 3 | 5arm 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.37 0.45 0.56 0.32 | 3 4 4 4 | 4 | 3 | 5 | 3 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------------------------------GGACCCA--------------------------- | 1 | novel | ||
| seed | --------------------------------------------------AAGCUCG--------------------------------------------------------------- | 1 | miR-99a*/99b* | ||
| seed | -----------------------------------------------------------------CCCGCUC------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------------------------------CGCCACC----------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T5S2 | |||
| -----------------------------------------------------------CCGCCACCCGCTCCCCGGAC----------------------------------------- | 20 | - | 1 | - | |
| ----------------------------------------------------------------ACCCGCTCCCCGGACGCA-------------------------------------- | 18 | 1 | - | - | |
| -------------------------------------------------GAAGCTCGCTCCGCCACCC---------------------------------------------------- | 19 | - | - | 1 | |
| -------------------------------------------------------------------------------------AGGACCCAGTGTGCCGTGA---------------- | 19 | - | 1 | - | |
| rat | nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaggtgctttgagcagGAAGCTCGCTCCGCCACCCGCTCCCCGGACGCAtccAGGACCCAGTGTGCCGTGAgccatcctcggccccg | ||||
| ************************************************************************************************************************ | |||||
| ..............................................................................................................>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000016791 ENSRNOG00000012175 NP_001101275.1 | ||||
| rat | ...................................((.(((......((((.((((((...(((((....(((..(((....))).)))....))).)).))))))..)))).))).)). | 0.810 -26.50 | |||
| rat | chromosome:3:159773652:159773771:-1 | intergenic |
sblock82 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.57/0.63 | 19/21/0.60 | 0.0 1.0 0.0 | 0.0 1.5 0.0 | 1 2 2 | 0 0 0 | 1 2 1 | 0 0 0 | 37 38 11 | -4 -7 24 | 5arm_loop 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.35 0.33 0.42 | 5 4 5 | 5 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------------------------------------CCGCGAA---------------------- | 2 | novel | |||
| seed | --------------------------------------------------------CCUUGAG--------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------UUCCUUG----------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------------UGCUCCC--------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T3S2 | |||
| ------------------------------------------------------------------------------------GCCGCGAACTGTGGGATGT----------- | 19 | - | - | - | 2 | |
| -------------------------------------GTGCTCCCCACTCTTCCTTC--------------------------------------------------------- | 20 | - | - | 1 | - | |
| -------------------------------------------------------TCCTTGAGGAGTGCCGAGTCA-------------------------------------- | 21 | 1 | - | - | - | |
| -----------------------------------------------------CTTCCTTGAGGAGTGCCGAG----------------------------------------- | 20 | - | 1 | - | - | |
| rat | gcctgccgggagctccccaccagcggctgcgcagttgGTGCTCCCCACTCTTCCTTCCTTGAGGAGTGCCGAGTCActcactggGCCGCGAACTGTGGGATGTactgggctagg | |||||
| ****************************************************************************************************************** | ||||||
| ---------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000022939 ENSRNOG00000017030 Arid1b | |||||
| rat | .((((((.((.((..(((((..((((((...((((.(((((((..((((((((.......))))))))..))).)))).)))))))))).....)))))..)).)).))).))) | 1.000 -56.70 | ||||
| rat | chromosome:1:40171203:40171316:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000022939|ENSRNOG00000017030 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000041881|ENSRNOG00000017030 ## ENSRNOG00000017030|protein_coding|Arid1b|transcription factor 1 [Source:RefSeq_peptide;Acc:NP_750843] |
sblock9766 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.28/0.33 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 23 18 | -4 5 | 5arm_loop 3arm | 1 1 | nd nd | 0.33 0.33 | 5 2 | 2 | 2 | 6 | 0 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------UUAAUCC---------------------------- | 1 | novel | |
| seed | ------------------------AGCUUAG---------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| -----------------------TAGCTTAGTGGAAGTTTT------------------------------------------ | 18 | 1 | - | |
| -----------------------------------------------ATTAATCCTATAAAGGTG------------------ | 18 | - | 1 | |
| rat | agtgcctcacatttaaaccaataTAGCTTAGTGGAAGTTTTacttttATTAATCCTATAAAGGTGtgttttattccagcacta | |||
| *********************************************************************************** | ||||
| rat | (((((...........(((..(((((.((((((((((.....))))))))))..)))))..))).............))))). | 0.930 -18.85 | ||
| rat | chromosome:5:113891830:113891912:1 | intergenic |
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