other hairpins
novel_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (10 loci)
novel_lenNOK_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH (10 loci)
sblock12582 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.278 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 21 18 | 10 10 | 5arm 3arm | 3 3 | nd nd | 0.58 0.53 | 5 5 | 2 | 1 | 2 | 1 |
| reads | miRBase family seed | ||
| seed | ----------------------CUCGGGG-------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------------------------GACAGAA----------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------------------------------------TGACAGAAGTCCCTCTGAC------------------ | 19 | 1 | |
| ---------------------GCTCGGGGTCACTGTAAAT--------------------------------------------------------------------- | 19 | 1 | |
| rat | cagaaggtcattagtggaggtGCTCGGGGTCACTGTAAATtcctgtgctgtaatctgacacttggcacacacTGACAGAAGTCCCTCTGACccttgacagaatgccctg | ||
| ************************************************************************************************************* | |||
| rat | ....(((.((((.((.((((.....((((...((((.......(((((((............))))))).....))))....)))).....)))).))..)))).))). | 0.900 -28.40 |
| rat | chromosome:9:105179299:105179407:1 | intergenic |
sblock12597 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.278 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 21 18 | 10 10 | 5arm 3arm | 3 3 | nd nd | 0.58 0.53 | 5 5 | 2 | 1 | 2 | 1 |
| reads | miRBase family seed | ||
| seed | ----------------------CUCGGGG-------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------------------------GACAGAA----------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------------------------------------TGACAGAAGTCCCTCTGAC------------------ | 19 | 1 | |
| ---------------------GCTCGGGGTCACTGTAAAT--------------------------------------------------------------------- | 19 | 1 | |
| rat | cagaaggtcattagtggaggtGCTCGGGGTCACTGTAAATtcctgtgctgtaatctgacacttggcacacacTGACAGAAGTCCCTCTGACccttgacagaatgccctg | ||
| ************************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000047326 ENSRNOG00000037286 LOC367336 | ||
| rat | ....(((.((((.((.((((.....((((...((((.......(((((((............))))))).....))))....)))).....)))).))..)))).))). | 0.900 -28.40 |
| rat | chromosome:9:105261920:105262028:1 | Same_strand|Intronic_coding|ENSRNOT00000047326|ENSRNOG00000037286 ## ENSRNOG00000037286|protein_coding|LOC367336| |
sblock12780 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.448 | no | no | 0.28/0.28 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 7 9 | 24 26 | 5arm 3arm | 2 2 | nd nd | 0.33 0.50 | 4 5 | 2 | 2 | 3 | 2 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------------------AACCUUU------------------- | 1 | novel | |
| seed | --------GGUGACU------------------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| -------TGGTGACTTACTTTAATA-------------------------------------------------------------------------------------------- | 18 | 1 | - | |
| ------------------------------------------------------------------------------------------TAACCTTTAGTTTCCAAT--------- | 18 | - | 1 | |
| rat | tttcctgTGGTGACTTACTTTAATActaatattcacaagatcgtctgattactatctactccatatctgatcacttgccactgtatagatTAACCTTTAGTTTCCAATctctgaaat | |||
| ********************************************************************************************************************* | ||||
| rat | ((((...(((.((((....(((((.((.((((...((((...(((.(((...............))).)))..)))).....))))))))))).....)))).)))......)))). | 0.870 -12.86 | ||
| rat | chromosome:X:30550174:30550290:1 | intergenic |
sblock12781 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.448 | no | no | 0.28/0.28 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 7 9 | 24 26 | 5arm 3arm | 2 2 | nd nd | 0.33 0.50 | 4 5 | 2 | 2 | 3 | 2 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------------------AACCUUU------------------- | 1 | novel | |
| seed | --------GGUGACU------------------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| -------TGGTGACTTACTTTAATA-------------------------------------------------------------------------------------------- | 18 | 1 | - | |
| ------------------------------------------------------------------------------------------TAACCTTTAGTTTCCAAT--------- | 18 | - | 1 | |
| rat | tttcctgTGGTGACTTACTTTAATActaatattcacaagatcgtctgattactatctactccatatctgatcacttgccactgtatagatTAACCTTTAGTTTCCAATctctgaaat | |||
| ********************************************************************************************************************* | ||||
| rat | ((((...(((.((((....(((((.((.((((...((((...(((.(((...............))).)))..)))).....))))))))))).....)))).)))......)))). | 0.870 -12.86 | ||
| rat | chromosome:X:30737130:30737246:1 | intergenic |
sblock4782 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.805 | no | no | 0.47/0.48 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 8 6 | 8 7 | 5arm 3arm | 1 1 | nd nd | 0.47 0.62 | 4 5 | 2 | 1 | 2 | 3 |
| reads | miRBase family seed | ||
| seed | ---------UCACCAG---------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------AGCUGAG------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| -----------------------------------------------CAGCTGAGATGGCAAGAGTAA------ | 21 | 1 | |
| --------ATCACCAGGAATAGAGGAC----------------------------------------------- | 19 | 1 | |
| rat | tagatgagATCACCAGGAATAGAGGACcttagtgcggccagcattttCAGCTGAGATGGCAAGAGTAAaatctg | ||
| ************************************************************************** | |||
| ------------------------------------------------------------------------------------ | ENSRNOT00000046138 ENSRNOG00000013328 Rbpms | ||
| ------------------------------------------------------------------------------------ | ENSRNOT00000017883 ENSRNOG00000013328 Rbpms | ||
| rat | (((((....((.(((....(((..((....(((((.....))))).))..)))...)))...)).....))))) | 0.510 -12.40 |
| rat | chromosome:16:62011631:62011704:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000046138|ENSRNOG00000013328 ## ENSRNOG00000013328|protein_coding|Rbpms|RNA binding protein gene with multiple splicing Gene [Source:MGI Symbol;Acc:MGI:1334446] |
sblock549 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.831 | no | no | 0.62/0.78 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 19 15 | 18 18 | 5arm 3arm | 1 1 | nd nd | 0.39 0.33 | 3 4 | 2 | 2 | 2 | 2 |
| reads | miRBase family seed | |||
| seed | --------------------CGCGUAG---------------------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------------------GGCGGGA---------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------GCGCGTAGCCACGCCCCT------------------------------------------------------------------------------ | 18 | - | 1 | |
| -------------------------------------------------------------------------------GGGCGGGAATTCTGGAAGCTC--------------- | 21 | 1 | - | |
| rat | cgtacggcccgtgacggaaGCGCGTAGCCACGCCCCTtacaggcgcctcccctctcccggaagtcggagtcaacgccttGGGCGGGAATTCTGGAAGCTCtgtcttgtctgttcg | |||
| ******************************************************************************************************************* | ||||
| <<........................................................................................................................... | ENSRNOT00000026021 ENSRNOG00000019229 Fbl | |||
| rat | ((.((((..((.(((((.(((...(((((.(((((.....(((((.((((...((......))..))))....))))).)))))))....)))...)))))))).)).)))).)) | 0.990 -36.70 | ||
| rat | chromosome:1:83271849:83271963:-1 | intergenic |
sblock6699 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.020 | no | no | 0.47/0.60 | 18/21/0.69 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.3 0.0 | 2 1 3 8 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 4 16 9 3 | 12 1 9 14 | 5arm 3arm 3arm 3arm | 1 1 2 2 | nd nd nd nd | 0.42 0.60 0.58 0.40 | 4 5 4 4 | 16 | 1 | 2 | 1 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------GUCACAA--------------- | 9 | novel |
| seed | -----------------------------------------------------AAGAUGU-------------------- | 3 | novel |
| seed | -----ACUUGUC-------------------------------------------------------------------- | 2 | novel |
| seed | ---------------------------------------------CGAGGCC---------------------------- | 1 | novel |
| seed | -----------------------------------------------------------UCACAAG-------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------------------TGTCACAAGGGAGAGGGTTG--- | 20 | 8 | |
| ----GACTTGTCCGAAAGGCAAC--------------------------------------------------------- | 19 | 2 | |
| ----------------------------------------------------GAAGATGTCACAAGGGAGA--------- | 19 | 2 | |
| --------------------------------------------CCGAGGCCGAAGATGTCACA---------------- | 20 | 1 | |
| ---------------------------------------------------------TGTCACAAGGGAGAGGGTTGA-- | 21 | 1 | |
| ----------------------------------------------------------GTCACAAGGGAGAGGGTTGA-- | 20 | 1 | |
| ----------------------------------------------------GAAGATGTCACAAGGGAG---------- | 18 | 1 | |
| rat | attggacttgtccgaaaggcaacaaaaggcaaggcaacagtgggccgaggccgaagaTGTCACAAGGGAGAGGGTTGaag | ||
| ******************************************************************************** | |||
| rat | .((.(((((.(((....((((......(((..(((........)))...))).....))))....)))...))))).)). | 0.920 -22.20 |
| rat | chromosome:20:5506035:5506114:-1 | intergenic |
sblock8258 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.458 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 26 26 | 0 2 | 5arm 3arm | 1 1 | nd nd | 0.42 0.37 | 4 5 | 2 | 2 | 2 | 3 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------UCACCAA------------------------------------- | 1 | novel | |
| seed | ---------------------------CCAAACG-------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ---------------------------------------------------CTCACCAAGTCGTCAACAC-------------------------- | 19 | 1 | - | |
| --------------------------TCCAAACGTGTGTGTAGCC--------------------------------------------------- | 19 | - | 1 | |
| rat | ccaccgcttgcttttctagtaccgtgTCCAAACGTGTGTGTAGCCtgcaggCTCACCAAGTCGTCAACACatcaataggtagccccggatcttggt | |||
| ************************************************************************************************ | ||||
| rat | ((((((...(((..((((.....((((....((.((.(((.((((....))))))))).)).....)))).....)))).)))..)))....))). | 0.970 -23.60 | ||
| rat | chromosome:3:142661156:142661251:1 | intergenic |
sblock9512 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.361 | no | no | 0.44/0.72 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 6 | 0 0 | 1 2 | 0 0 | 8 5 | 10 13 | 5arm 3arm | 1 1 | nd nd | 0.39 0.44 | 5 3 | 7 | 3 | 1 | 3 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------CCACUCU--------------- | 6 | novel | ||
| seed | ---------GUCCGAG-------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -------------------------------------------------------------TCCACTCTCTTGACTGTA----- | 18 | 2 | 4 | - | |
| --------GGTCCGAGCTGCGGGAAG---------------------------------------------------------- | 18 | - | - | 1 | |
| rat | gctgagttggtccgagctgcgggaaggagcgcaggcgtctttatcaaagtctatgggcttcTCCACTCTCTTGACTGTAttagc | ||||
| ************************************************************************************ | |||||
| <<<<<<<<<<<<<<<<<<<<<------------------------------------------------------------------------- | ENSRNOT00000011302 ENSRNOG00000008489 RGD1564921_predicted | ||||
| rat | (((((...((((.(((.....((.((((((.(((((............)))..)).))))))))...)))..))))...))))) | 1.000 -24.60 | |||
| rat | chromosome:5:139959148:139959231:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000011302|ENSRNOG00000008489 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000011302|ENSRNOG00000008489 ## ENSRNOG00000008489|protein_coding|RGD1564921_predicted| |
sblock9798 [novel_lenNOK_multiarm_DicerOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.242 | no | no | 0.40/0.50 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 20 23 | 0 3 | 5arm 3arm | 2 2 | nd nd | 0.55 0.33 | 4 4 | 2 | 2 | 3 | 3 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------AGGUGUU--------------------------------- | 1 | novel | |
| seed | ---------------------AUUCUAC------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------TATTCTACATGCACCAAAGG------------------------------------------------- | 20 | 1 | - | |
| ------------------------------------------------AAGGTGTTCAAAGCAGGC----------------------- | 18 | - | 1 | |
| rat | ggtctgatattggagctgttTATTCTACATGCACCAAAGGaaggctcgAAGGTGTTCAAAGCAGGCagctctgttgagatagctggatt | |||
| ***************************************************************************************** | ||||
| --------------------------------------------------------------------------------------------------- | ENSRNOT00000056882 ENSRNOG00000019236 LOC500532 | |||
| rat | .((((.....(((((((((((...((....(((((...((.....))...)))))....)).)))))))))))...))))......... | 0.880 -21.30 | ||
| rat | chromosome:5:137668734:137668822:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000026201|ENSRNOG00000019236 ## Opposite_strand|Intronic_coding|ENSRNOT00000056882|ENSRNOG00000019236 ## ENSRNOG00000019236|protein_coding|LOC500532| |
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