other hairpins
novel_lenNOK_multiarm_Multihit (10 loci)
novel_lenNOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH (10 loci)
block425527 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.42/0.47 | 19/25/0.00 | 0.0 0.0 | 0.0 0.0 | 3 5 | 0 0 | 1 1 | 0 0 | 17 9 | -17 -4 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.44 0.32 | 6 3 | 9 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------GAGCCUA-------------------- | 5 | novel |
| seed | ------------------AGGAAGG------------------------------ | 3 | novel |
| seed | ------------------------------GCCUAAC------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------TGAGCCTAACTGACATGGA--------- | 19 | 5 | |
| -----------------TAGGAAGGATTGAGCCTAACTGACA------------- | 25 | 3 | |
| -----------------------------AGCCTAACTGACATGGAAT------- | 19 | 1 | |
| rat | ctcttcacttccaaggtTAGGAAGGATTGAGCCTAACTGACATGGAataaggaga | ||
| ******************************************************* | |||
| rat | (((((...(((((..(((((..(((......)))..))))).)))))..))))). | 1.000 -18.70 |
| rat | chromosome:15:225839:225893:-1 | intergenic |
block1083595 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.39/0.42 | 18/20/0.25 | 0.7 0.0 | 0.0 0.0 | 3 1 | 0 0 | 3 1 | 0 0 | 16 5 | -16 -3 | 5arm_loop_3arm 3arm_loop | 1 2 | nd nd | 0.45 0.33 | 6 3 | 4 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------UCUAUUU--------------------- | 2 | novel | |||
| seed | ------------------------UUGGGUU--------------- | 1 | novel | |||
| seed | -----------------UUCUAUU---------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T3S2 | T4S1 | T4S2 | T5S1 | |||
| -----------------TTCTATTTTGGGTTGGGGA---------- | 19 | 1 | 1 | - | - | |
| ----------------TTTCTATTTTGGGTTGGGGA---------- | 20 | - | - | - | 1 | |
| -----------------------TTTGGGTTGGGGAAAATA----- | 18 | - | - | 1 | - | |
| rat | taacattatggccccaTTTCTATTTTGGGTTGGGGAAAATAggtta | |||||
| ********************************************** | ||||||
| rat | ((((.((((..(((((.(((......))).)))))...)))))))) | 1.000 -13.30 | ||||
| rat | chromosome:20:43480681:43480726:-1 | intergenic |
block1879273 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.50/0.57 | 18/21/0.50 | 0.0 0.0 0.0 | 0.0 0.5 0.0 | 1 2 1 | 0 0 0 | 1 2 1 | 0 0 0 | 24 30 37 | -2 -11 -15 | 5arm_loop 5arm_loop 5arm_loop_3arm | 1 1 2 | nd nd nd | 0.33 0.60 0.72 | 3 11 13 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------UGGGAGA------------------------------------------------------ | 2 | miR-30c | ||
| seed | --------------------------------------UGACAGA----------------------------------------------- | 1 | novel | ||
| seed | -------------------------CAGAACU------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S1 | T3S2 | |||
| ------------------------------CTGGGAGATGACAGACACACG----------------------------------------- | 21 | - | 1 | - | |
| -------------------------------------ATGACAGACACACGGGCA------------------------------------- | 18 | - | - | 1 | |
| ------------------------ACAGAACTGGGAGATGAC-------------------------------------------------- | 18 | - | 1 | - | |
| ------------------------------CTGGGAGATGACAGACACAC------------------------------------------ | 20 | 1 | - | - | |
| rat | gcctcagcaaaagcctgctgtttaACAGAACTGGGAGATGACAGACACACGGGCAtctcttttctaacagtggcaaactgtgctgaaaggca | ||||
| ******************************************************************************************** | |||||
| ------------------------------------------------------------------------------------------------------ | ENSRNOT00000015250 ENSRNOG00000011421 Smap1l | ||||
| rat | (((((((((...(((.((((((....((((..((((((((.............)))))))))))))))))))))......))))))..))). | 0.990 -32.02 | |||
| rat | chromosome:5:141588521:141588612:1 | Opposite_strand|Intronic_coding|ENSRNOT00000015250|ENSRNOG00000011421 ## ENSRNOG00000011421|protein_coding|Smap1l|Smap1l protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q4FZR9] |
block1974473 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.58/0.84 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 43 49 | -2 -8 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.37 0.37 | 3 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------AUUUUAG---------------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------------------GGGGUGG---------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| -------------------------------------------------AGGGGTGGGGGGGTCCCCC----------------------------------------------- | 19 | 1 | |
| -------------------------------------------TATTTTAGGGGTGGGGGGG----------------------------------------------------- | 19 | 1 | |
| rat | tttcctctcctgtgaatggagagtgctgctaccattttgaggcTATTTTAGGGGTGGGGGGGTCCCCCaatccatgagtacccatatcagctatgtcttaattcatggtgaggaa | ||
| ******************************************************************************************************************* | |||
| rat | .((((((.((.((((((.((((..((((.((......((.((.(((((...((((.((((....)))).))))..))))))))))).))))....)))).)))))))).)))))) | 0.830 -42.40 |
| rat | chromosome:6:123759364:123759478:-1 | intergenic |
block2040518 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.68/0.79 | 19/19/0.00 | 0.0 1.0 0.0 | 0.0 1.0 0.0 | 1 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 36 40 25 | -8 -14 -4 | 5arm_loop_3arm 5arm_loop_3arm 3arm_loop | 1 1 1 | nd nd nd | 0.42 0.37 0.32 | 4 4 3 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------UGGGGGA----------------------------------------- | 1 | novel | ||
| seed | -------------------------------------GGCGAGU----------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------GAACCCG------------------------------------ | 1 | novel | ||
| seed | -----------------------------------------AGUGGGG------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T3S1 | T3S2 | |||
| -----------------------------------------------GGAACCCGGCGCAGGAACT------------------------- | 19 | - | 1 | - | |
| ----------------------------------------GAGTGGGGGAACCCGGCGC-------------------------------- | 19 | - | - | 1 | |
| ------------------------------------GGGCGAGTGGGGGAACCCG------------------------------------ | 19 | 1 | - | - | |
| ------------------------------------------GTGGGGGAACCCGGCGCAG------------------------------ | 19 | - | - | 1 | |
| rat | acagcttgttatttggtggattgtggcagtaaatcgGGGCGAGTGGGGGAACCCGGCGCAGGAACTgccgctgcggccgggagcggtgctg | ||||
| ******************************************************************************************* | |||||
| rat | .(((((((((.((((((.....((((((((...((...(((..((((....)))).)))..))))))))))....))))))))))).)))) | 0.990 -38.70 | |||
| rat | chromosome:6:93130863:93130953:1 | intergenic ## {SimpF: oe = 0.78 0 CpG} |
block648708 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.38/0.42 | 19/24/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 47 40 | -14 -4 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.50 0.47 | 6 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------AGUGAAU--------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------GUAACUC--------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------------------------------TGTAACTCTCAGTCTACTG---------------------------------------- | 19 | 1 | |
| -----------------------------------------------TAGTGAATGTGATGTAACTCTCAG----------------------------------------------- | 24 | 1 | |
| rat | gaattttaatgtgtcctcaagatagcacaggatgtccagggatgaagTAGTGAATGTGATGTAACTCTCAGTCTACTGgcaatgggtgtcaatgctgtcagggtacacagcatcgttc | ||
| ********************************************************************************************************************** | |||
| rat | ((((.....((((((((...(((((((...((..((((....((.((((((((..((......))..)))..)))))..)).))))..))..))))))).))).))))).....)))) | 1.000 -36.40 |
| rat | chromosome:17:20782064:20782181:1 | intergenic |
sblock1736 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.44/0.50 | 18/21/0.60 | 0.0 0.3 0.0 | 0.0 0.3 0.0 | 1 3 1 | 0 0 0 | 1 2 1 | 0 0 0 | 18 40 28 | 10 -14 -4 | 5arm 5arm_loop_3arm 3arm_loop | 1 1 1 | nd nd nd | 0.39 0.75 0.62 | 3 8 8 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------ACAGAAG----------------------------------------------- | 2 | novel | |||
| seed | -------------------GACCUGA--------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------CAGAAGU---------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------GUAUCAU----------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T3S1 | T3S2 | |||
| ----------------------------------------GACAGAAGTATCATCAGCCC----------------------------------- | 20 | - | 2 | - | - | |
| -----------------------------------------ACAGAAGTATCATCAGCC------------------------------------ | 18 | - | - | 1 | - | |
| ----------------------------------------------AGTATCATCAGCCCGTTCAAG---------------------------- | 21 | - | - | - | 1 | |
| ------------------AGACCTGAGACAGAGAAC----------------------------------------------------------- | 18 | 1 | - | - | - | |
| rat | ctgggtgtgggaggctggAGACCTGAGACAGAGAACcaaaGACAGAAGTATCATCAGCCCGTTCAAGtccagagctccaggccctgcaccgcggg | |||||
| *********************************************************************************************** | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000031821 ENSRNOG00000029957 LOC682131 | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040045 ENSRNOG00000029957 LOC682131 | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044359 ENSRNOG00000029957 LOC682131 | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046206 ENSRNOG00000029957 LOC682131 | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000050119 ENSRNOG00000029957 LOC682131 | |||||
| rat | (((((((..((...((((((..(((.(((...((((........((....))........))))..))))))..))))))..))..)))).))). | 1.000 -35.09 | ||||
| rat | chromosome:1:59573562:59573656:1 | Same_strand|Boundary_non-coding|ENSRNOT00000047256|ENSRNOG00000029957 ## Same_strand|Intronic_coding|ENSRNOT00000050119|ENSRNOG00000029957 ## ENSRNOG00000029957|protein_coding|LOC682131|zinc finger protein 53 [Source:RefSeq_peptide;Acc:NP_001100938] |
sblock6307 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.47/0.58 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 13 39 | 17 -7 | 5arm 3arm_loop | 7 8 | nd nd | 0.42 0.47 | 3 6 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------GGGACAG------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ------------------------------------------------------GAGUGGU-------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T4S2 | |||
| -------------TGGGACAGAAGTGCAAACT------------------------------------------------------------------------------- | 19 | - | 2 | |
| -----------------------------------------------------GGAGTGGTTGGATACAGGG--------------------------------------- | 19 | 1 | - | |
| rat | tcgatagcacaacTGGGACAGAAGTGCAAACTatcatctacctatctgggagtGGAGTGGTTGGATACAGGGagatggaacatttgtatttagtaaagttgtgctgtcggt | |||
| *************************************************************************************************************** | ||||
| rat | ((((((((((((((...((..(((((((((...((((((.(((((((((...........))))))..))).))))))....))))))))).))..)))))))))))))). | 0.630 -39.60 | ||
| rat | chromosome:2:472905:473015:1 | intergenic |
sblock6308 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.47/0.58 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 13 39 | 17 -7 | 5arm 3arm_loop | 7 8 | nd nd | 0.42 0.47 | 3 6 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------GGGACAG------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ------------------------------------------------------GAGUGGU-------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T4S2 | |||
| -------------TGGGACAGAAGTGCAAACT------------------------------------------------------------------------------- | 19 | - | 2 | |
| -----------------------------------------------------GGAGTGGTTGGATACAGGG--------------------------------------- | 19 | 1 | - | |
| rat | tcgatagcacaacTGGGACAGAAGTGCAAACTatcatctacctatctgggagtGGAGTGGTTGGATACAGGGagatggaacatttgtattcagtaaagttgtgctgtcggt | |||
| *************************************************************************************************************** | ||||
| rat | ((((((((((((((...((.((.(((((((...((((((.(((((((((...........))))))..))).))))))....))))))))).))..)))))))))))))). | 0.580 -38.60 | ||
| rat | chromosome:2:773560:773670:1 | intergenic |
sblock7641 [novel_lenNOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.32/0.39 | 18/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 12 29 | -1 -3 | 5arm_loop 3arm_loop | 2 5 | nd nd | 0.44 0.41 | 3 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------AAUACUG------------------------------------------------------------ | 1 | miR-200b/200c/429 | |
| seed | ------------------------------UUGAUGA------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S2 | |||
| -----------------------------GTTGATGATTTTCAGTATCTCT----------------------------- | 22 | - | 1 | |
| ------------CAATACTGTGTGTTGTTG-------------------------------------------------- | 18 | 1 | - | |
| rat | ctcatgctttgaCAATACTGTGTGTTGTTGTTGATGATTTTCAGTATCTCTagcatggannnnnnnnnnnnnnnnnnnnn | |||
| ******************************************************************************** | ||||
| rat | .(((((((..((..((((((...((..((...))..))...)))))).)).)))))))...................... | 0.800 -15.90 | ||
| rat | chromosome:3:140487036:140487115:-1 | intergenic |
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