other hairpins
novel_lenNOK_multiarm_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (10 loci)
novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH (10 loci)
sblock10692 [novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.270 | no | no | 0.45/0.48 | 20/23/1.00 | 0.0 1.0 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 7 5 | -3 -1 | 5arm_loop 3arm | 11 11 | nd nd | 0.45 0.43 | 4 5 | 3 | 3 | 0 | 5 |
| reads | miRBase family seed | ||||
| seed | ----------------------------GCAGACU-------------------- | 1 | novel | ||
| seed | ------------------------------AGACUUA------------------ | 1 | novel | ||
| seed | --------UGCUCUU---------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S1 | |||
| -----------------------------CAGACTTAGTGGGTAGACACA----- | 21 | - | 1 | - | |
| -------TTGCTCTTCTGGTATGCTGA---------------------------- | 20 | 1 | - | - | |
| ---------------------------TGCAGACTTAGTGGGTAGACACA----- | 23 | - | - | 1 | |
| rat | ggggcatTTGCTCTTCTGGTATGCTGATGCAGACTTAGTGGGTAGACACAtctcc | ||||
| ******************************************************* | |||||
| rat | ((((..(((((((....(((.(((....))).)))....))))))).....)))) | 0.970 -14.40 | |||
| rat | chromosome:7:18799127:18799181:-1 | intergenic |
sblock10735 [novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.304 | no | no | 0.45/0.55 | 20/20/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 7 5 | -3 2 | 5arm_loop 3arm | 11 11 | nd nd | 0.35 0.40 | 4 5 | 2 | 2 | 3 | 0 |
| reads | miRBase family seed | |||
| seed | -------------------------------GACUCAG----------------- | 1 | novel | |
| seed | --------UGCUCUU---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------TTGCTCTTCTGGTATGCTGA---------------------------- | 20 | 1 | - | |
| ------------------------------GGACTCAGTGGGTAGACACA----- | 20 | - | 1 | |
| rat | ggggcatTTGCTCTTCTGGTATGCTGAtgcGGACTCAGTGGGTAGACACAtctcc | |||
| ******************************************************* | ||||
| rat | ((((..(((((((..(((((.(((....))).)).))).))))))).....)))) | 0.990 -15.70 | ||
| rat | chromosome:7:19393301:19393355:-1 | intergenic |
sblock1647 [novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.260 | no | no | 0.35/0.43 | 20/25/0.75 | 0.7 0.0 | 0.0 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 18 16 | -1 10 | 5arm_loop 3arm | 10 17 | nd nd | 0.32 0.50 | 4 6 | 4 | 2 | 11 | 4 |
| reads | miRBase family seed | |||
| seed | ---------------------GAAGACA------------------------------------------------------------------ | 2 | novel | |
| seed | -------------------AUGAAGA-------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------CUACUUG---------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------TGAAGACATTGAACCTCACACAG--------------------------------------------------- | 23 | 2 | - | |
| ----------------------------------------------------------TCTACTTGTTTTCGTCTCAA---------------- | 20 | - | 1 | |
| ------------------TATGAAGACATTGAACCTCACACAG--------------------------------------------------- | 25 | - | 1 | |
| rat | catactttcagatacattTATGAAGACATTGAACCTCACACAGctccatgacaaggtaTCTACTTGTTTTCGTCTCAAttattgaagatgatgt | |||
| ********************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------- | ENSRNOT00000059909 ENSRNOG00000030267 RGD1561185_predicted | |||
| rat | (((..((((((........(((((((((..((((((....((......))...)))).))....)))))))))........))))))...))). | 0.450 -14.89 | ||
| rat | chromosome:1:52653822:52653915:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000048991|ENSRNOG00000030267 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059909|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
sblock215 [novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.135 | no | no | 0.35/0.43 | 20/25/0.75 | 0.7 0.0 | 0.0 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 13 10 | -1 10 | 5arm_loop 3arm | 10 17 | nd nd | 0.32 0.50 | 4 6 | 4 | 2 | 11 | 4 |
| reads | miRBase family seed | |||
| seed | ----------------GAAGACA------------------------------------------------------------ | 2 | novel | |
| seed | ------------------------------------------------------CUACUUG---------------------- | 1 | novel | |
| seed | --------------AUGAAGA-------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------TGAAGACATTGAACCTCACACAG--------------------------------------------- | 23 | 2 | - | |
| -------------TATGAAGACATTGAACCTCACACAG--------------------------------------------- | 25 | - | 1 | |
| -----------------------------------------------------TCTACTTGTTTTCGTCTCAA---------- | 20 | - | 1 | |
| rat | tttcagatacattTATGAAGACATTGAACCTCACACAGctccatgacaaggtaTCTACTTGTTTTCGTCTCAAttattgaaga | |||
| *********************************************************************************** | ||||
| rat | ((((((........(((((((((..((((((....((......))...)))).))....)))))))))........)))))). | 0.980 -13.99 | ||
| rat | chromosome:1:49946414:49946496:-1 | intergenic |
sblock4092 [novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.711 | no | no | 0.60/0.70 | 20/20/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 37 26 | -2 5 | 5arm_loop 3arm | 20 20 | nd nd | 0.45 0.35 | 3 4 | 2 | 2 | 7 | 5 |
| reads | miRBase family seed | |||
| seed | --------------------------------------GCCAUGC------------------------------------------------------------------ | 1 | novel | |
| seed | ------------------------------------------------------------------GGCUCUC-------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| -------------------------------------GGCCATGCAGCCAGCATCCC------------------------------------------------------ | 20 | 1 | - | |
| -----------------------------------------------------------------AGGCTCTCAGCACCCCATTC-------------------------- | 20 | - | 1 | |
| rat | cttagcatttagtcctgctttagtgttgttcaaatgtGGCCATGCAGCCAGCATCCCtttgatccAGGCTCTCAGCACCCCATTCccgtcactgatctgatgcatgcttgg | |||
| *************************************************************************************************************** | ||||
| rat | ((.(((((...(((.....((((((.((....((((.((...(((((((...(((.....)))...))))....))).))))))..)).))))))...)))..))))).)) | 0.690 -22.00 | ||
| rat | chromosome:14:49761079:49761189:-1 | intergenic |
sblock6157 [novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.508 | no | no | 0.45/0.55 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 12 0 | -18 2 | 5arm_loop 3arm | 9 12 | nd nd | 0.86 0.47 | 19 4 | 2 | 1 | 0 | 12 |
| reads | miRBase family seed | ||
| seed | -------------GACUGAC------------------------------------- | 1 | novel |
| seed | --------------------------------------CUCCAUA------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------TCTCCATAGCCAGTGGACTG | 20 | 1 | |
| ------------TGACTGACTTTTTCCTGACCCT----------------------- | 22 | 1 | |
| rat | cctgtggctagaTGACTGACTTTTTCCTGACCCTtgtTCTCCATAGCCAGTGGACTG | ||
| ********************************************************* | |||
| rat | ((..((((((((.(((...................))).))..))))))..)).... | 0.990 -10.81 |
| rat | chromosome:2:186398963:186399019:-1 | intergenic ## {Repeats: trf 31 47 0 class=trf} |
sblock9485 [novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.066 | no | no | 0.68/0.71 | 21/22/1.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 8 0 | -2 9 | 5arm_loop 3arm | 22 23 | nd nd | 0.52 0.52 | 4 4 | 3 | 2 | -19 | 0 |
| reads | miRBase family seed | |||
| seed | ---------CUGCCCA--------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------CUGCCCA--------------- | 1 | novel | |
| seed | ----------------------------------------------UGCCCAC-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S1 | |||
| --------CCTGCCCACTGTCAGGGTCCC-------------------------------------- | 21 | 1 | - | |
| --------------------------------------------CCTGCCCACTGTCAGGGTCCC-- | 21 | 1 | - | |
| ---------------------------------------------CTGCCCACTGTCAGGGTCCCTG | 22 | - | 1 | |
| rat | gacccacaCCTGCCCACTGTCAGGGTCCCtaccccagacccacaCCTGCCCACTGTCAGGGTCCCTG | |||
| ******************************************************************* | ||||
| rat | ((((((((...((....(((..(((((.........))))))))...))....)))..))))).... | 0.820 -16.40 | ||
| rat | chromosome:5:127252202:127252268:-1 | intergenic ## {Repeats: trf 508 531 0 class=trf,trf 400 423 0 class=trf,trf 472 495 0 class=trf} |
sblock9686 [novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.188 | no | no | 0.55/0.74 | 20/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 2 7 | -3 -4 | 5arm_loop 3arm_loop | 88 88 | nd nd | 0.39 0.50 | 4 3 | 2 | 2 | 0 | -4 |
| reads | miRBase family seed | |||
| seed | -------------------------GGAGGAC------------------- | 1 | novel | |
| seed | ---AGGCUGG----------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ------------------------AGGAGGACATGCACCACTGT------- | 20 | - | 1 | |
| --CAGGCTGGGGCGCCTGGTCCACA-------------------------- | 23 | 1 | - | |
| rat | gcCAGGCTGGGGCGCCTGGTCCACAGGAGGACATGCACCACTGTtgcctgc | |||
| *************************************************** | ||||
| ------------------------------------------------------------- | ENSRNOT00000008474 ENSRNOG00000006096 Slc26a7 | |||
| rat | ..(((((.((((.((...((((......))))..)).)).))...))))). | 0.860 -20.40 | ||
| rat | chromosome:5:29013769:29013819:1 | Opposite_strand|Intronic_coding|ENSRNOT00000008474|ENSRNOG00000006096 ## ENSRNOG00000006096|protein_coding|Slc26a7|solute carrier family 26, member 7 Gene [Source:MGI (curated);Acc:Slc26a7-001] |
sblock11285 [novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.324 | no | no | 0.50/0.65 | 20/22/1.00 | 0.0 0.0 0.0 | 1.0 0.0 0.0 | 3 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 15 45 16 | 18 -10 6 | 5arm 5arm_loop_3arm 3arm | 3 52 52 | nd nd nd | 0.32 0.50 0.36 | 5 5 4 | 5 | 4 | -9 | -8 |
| reads | miRBase family seed | |||||
| seed | ----------------UCAGGGG--------------------------------------------------------------------------------- | 3 | novel | |||
| seed | -------------------------------------------------------------------UUGGUGG------------------------------ | 1 | novel | |||
| seed | ----------------------------------------------CAUCCUA--------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T3S1 | T5S2 | |||
| ---------------GTCAGGGGCAGAGCAGACACA-------------------------------------------------------------------- | 21 | - | - | 1 | - | |
| ------------------------------------------------------------------CTTGGTGGCCAAAGCTGTTTCA---------------- | 22 | - | - | - | 1 | |
| ---------------GTCAGGGGCAGAGCAGACACAG------------------------------------------------------------------- | 22 | 1 | - | - | - | |
| ---------------GTCAGGGGCAGAGCAGACAC--------------------------------------------------------------------- | 20 | 1 | - | - | - | |
| ---------------------------------------------TCATCCTAGCTTGATGCCTG--------------------------------------- | 20 | - | 1 | - | - | |
| rat | gttgttcttacatcaGTCAGGGGCAGAGCAGACACAGgcctttgtTCATCCTAGCTTGATGCCTGgCTTGGTGGCCAAAGCTGTTTCAtgcctagggcacagcc | |||||
| ******************************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000005286 ENSRNOG00000003890 Nap1l1 | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058562 ENSRNOG00000003890 Nap1l1 | |||||
| rat | (((((..........(((..(((((((((((.....((((.....(((.((..((.....))..))..))).))))....))))))..)))))..)))))))). | 0.460 -31.70 | ||||
| rat | chromosome:7:50514281:50514384:1 | Same_strand|Intronic_coding|ENSRNOT00000005286|ENSRNOG00000003890 ## ENSRNOG00000003890|protein_coding|Nap1l1|Nucleosome assembly protein 1-like 1 (NAP-1-related protein). [Source:UniProtKB/Swiss-Prot;Acc:Q9Z2G8] |
sblock7756 [novel_multiarm_DicerNOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.068 | no | no | 0.50/0.65 | 20/22/1.00 | 0.0 0.0 0.0 | 1.0 0.0 0.0 | 3 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 0 30 11 | 18 -10 6 | 5arm 5arm_loop_3arm 3arm | 3 52 52 | nd nd nd | 0.32 0.50 0.32 | 5 5 4 | 5 | 4 | -9 | -8 |
| reads | miRBase family seed | |||||
| seed | -UCAGGGG---------------------------------------------------------------------------- | 3 | novel | |||
| seed | ----------------------------------------------------UUGGUGG------------------------- | 1 | novel | |||
| seed | -------------------------------CAUCCUA---------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T3S1 | T5S2 | |||
| ------------------------------TCATCCTAGCTTGATGCCTG---------------------------------- | 20 | - | 1 | - | - | |
| GTCAGGGGCAGAGCAGACACAG-------------------------------------------------------------- | 22 | 1 | - | - | - | |
| GTCAGGGGCAGAGCAGACAC---------------------------------------------------------------- | 20 | 1 | - | - | - | |
| ---------------------------------------------------CTTGGTGGCCAAAGCTGTTTCA----------- | 22 | - | - | - | 1 | |
| GTCAGGGGCAGAGCAGACACA--------------------------------------------------------------- | 21 | - | - | 1 | - | |
| rat | GTCAGGGGCAGAGCAGACACAGgcctttgcTCATCCTAGCTTGATGCCTGgCTTGGTGGCCAAAGCTGTTTCAtgcctagggca | |||||
| ************************************************************************************ | ||||||
| rat | (((..(((((((((((.....((((...((.((.((..((.....))..))..))))))))....))))))..)))))..))). | 0.440 -30.70 | ||||
| rat | chromosome:3:146721068:146721151:-1 | intergenic |
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