other hairpins
novel_cloningOK_5varHIGH (9 loci)
block1178294 [novel_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.075 | no | no | 0.48/0.60 | 18/23/0.70 | 0.0 1.9 | 0.0 1.6 | 1 9 | 0 0 | 1 4 | 0 0 | 3 9 | 14 0 | 5arm 5arm | 5 5 | nd nd | 0.35 0.22 | 3 1 | 10 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ----------CAUGACU-------------------------------------------------------------------- | 5 | novel | ||||
| seed | -------------GACUUGA----------------------------------------------------------------- | 3 | novel | ||||
| seed | ---------------CUUGAAG--------------------------------------------------------------- | 1 | novel | ||||
| seed | ----GGGGACC-------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T5S1 | T5S2 | |||
| ---------CCATGACTTGAAGCGCTGCCAGT----------------------------------------------------- | 23 | 1 | 1 | - | 1 | - | |
| ------------TGACTTGAAGCGCTGCCA------------------------------------------------------- | 18 | - | - | - | 3 | - | |
| ---------CCATGACTTGAAGCGCTGCCA------------------------------------------------------- | 21 | 1 | - | - | - | - | |
| ---------CCATGACTTGAAGCGCTGCC-------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| --------------ACTTGAAGCGCTGCCAGTATGTT------------------------------------------------ | 23 | - | 1 | - | - | - | |
| ---TGGGGACCATGACTTGAAGC-------------------------------------------------------------- | 20 | - | - | 1 | - | - | |
| rat | tgaTGGGGACCATGACTTGAAGCGCTGCCAGTATGTTactgagaaggtaccggcagctgtctacaaggctctgagtgaccaccat | ||||||
| ************************************************************************************* | |||||||
| rat | ((.(((..((((...((((.((.((((((.((((.((......)).)))).))))))...)).))))....)).))..))).)). | 0.960 -27.20 | |||||
| rat | chromosome:2:133014866:133014950:-1 | intergenic |
block1973478 [novel_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.120 | no | no | 0.24/0.55 | 19/24/0.96 | 0.7 3.2 | 0.7 5.1 | 14 9 | 0 0 | 4 4 | 0 0 | 7 15 | 18 0 | 5arm 5arm | 1 1 | nd nd | 0.25 0.20 | 3 3 | 28 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ----------GAUGUUU---------------------------------------------------------------------------------------------- | 11 | novel | |||||
| seed | --------AUGAUGU------------------------------------------------------------------------------------------------ | 6 | novel | |||||
| seed | --------------------------GCAUCCA------------------------------------------------------------------------------ | 3 | novel | |||||
| seed | -----UUUAUGA--------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ------------------------AUGCAUC-------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ------------------CUUCUCA-------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ---------------------CUCAUGC----------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------UUCUUCU---------------------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T5S1 | |||
| ---------TGATGTTTTCTTCTCATGCA---------------------------------------------------------------------------------- | 20 | - | - | 1 | 1 | - | 9 | |
| -------TATGATGTTTTCTTCTCATG------------------------------------------------------------------------------------ | 20 | 1 | - | - | - | - | 5 | |
| -------------------------TGCATCCAGTTGGTACCCAC------------------------------------------------------------------ | 20 | 1 | 1 | - | - | - | 1 | |
| ----TTTTATGATGTTTTCTTCTCA-------------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 2 | |
| -----------------TCTTCTCATGCATCCAGTTG-------------------------------------------------------------------------- | 20 | - | - | - | - | 1 | 1 | |
| -----------------------CATGCATCCAGTTGGTACCCACCA---------------------------------------------------------------- | 24 | - | - | - | - | - | 2 | |
| ---------------TTTCTTCTCATGCATCCAGT---------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| --------------------TCTCATGCATCCAGTTGGT------------------------------------------------------------------------ | 19 | - | - | - | - | - | 1 | |
| rat | gctctttTATGATGTTTTCTTCTCATGCAtccagttggtacccaccatttcccctctggctctaggtaaatgaattggatctcttggggagacatttatattgtttatgct | |||||||
| *************************************************************************************************************** | ||||||||
| rat | ((......(((((((..((((((((...((((((((.(((((..(((.........))).....)))..)).))))))))....)))))))).....)))))))....)). | 0.710 -23.80 | ||||||
| rat | chromosome:6:122576123:122576233:-1 | intergenic |
block97470 [novel_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.713 | no | no | 0.33/0.50 | 18/24/0.80 | 1.3 2.0 | 0.7 4.0 | 6 4 | 0 0 | 2 2 | 0 0 | 13 23 | 17 5 | 5arm 5arm | 1 1 | nd nd | 0.42 0.27 | 4 3 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------AAGUGUU----------------------------------------------------------------------------------------------- | 4 | novel | |
| seed | --------------ACUUAAG--------------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------------GCUCUUU---------------------------------------------------------------------------------------- | 2 | novel | |
| seed | ------------------------------UUGUUGA----------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------UGCUCUU----------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------TAAGTGTTGCTCTTTGTTGA----------------------------------------------------------------------------------- | 20 | - | 3 | |
| ------------------------TGCTCTTTGTTGATCCTGGTGG-------------------------------------------------------------------------- | 22 | - | 1 | |
| -----------------------------TTTGTTGATCCTGGTGGCAG----------------------------------------------------------------------- | 20 | - | 1 | |
| -----------------TAAGTGTTGCTCTTTGTTG------------------------------------------------------------------------------------ | 19 | - | 1 | |
| -----------------------TTGCTCTTTGTTGATCCT------------------------------------------------------------------------------- | 18 | 1 | - | |
| -------------TACTTAAGTGTTGCTCTTTGTTGA----------------------------------------------------------------------------------- | 24 | - | 1 | |
| -------------TACTTAAGTGTTGCTCTTTGT-------------------------------------------------------------------------------------- | 21 | 1 | - | |
| ------------------------TGCTCTTTGTTGATCCTGGT---------------------------------------------------------------------------- | 20 | - | 1 | |
| rat | ctctggaagccatTACTTAAGTGTTGCTCTTTGTTGATCCTGGTGGCAGcggggccagagaccctgtgtaatcgggtttgttgaattctggaagagaaaaactgtataagcctattgagt | |||
| ************************************************************************************************************************ | ||||
| rat | (((.....((...(((...(((....((((((...((.((((((.(((.(((((.......)))))))).))))))..........))..))))))....))))))...)).....))). | 0.810 -28.30 | ||
| rat | chromosome:10:92627765:92627884:1 | intergenic |
block204111 [novel_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.043 | no | no | 0.40/0.56 | 18/24/0.70 | 0.0 1.9 | 0.0 1.1 | 2 8 | 0 0 | 1 3 | 0 0 | 19 6 | 4 9 | 3arm 3arm | 2 2 | nd nd | 0.16 0.11 | 2 1 | 10 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------GGUUCGU--------------------- | 4 | novel | ||
| seed | ------------------------------------------------------CCAUGGU------------------------- | 3 | novel | ||
| seed | -------------------------------------------------CUUCUCC------------------------------ | 2 | miR-207 | ||
| seed | -------------------------------------------------------------UCGUGGC------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ---------------------------------------------------------TGGTTCGTGGCTTGTTTACT--------- | 20 | 1 | - | 3 | |
| -----------------------------------------------------TCCATGGTTCGTGGCTTGTTTACT--------- | 24 | - | 1 | 1 | |
| ------------------------------------------------TCTTCTCCATGGTTCGTGG------------------- | 19 | - | - | 2 | |
| ------------------------------------------------------------TTCGTGGCTTGTTTACTAGA------ | 20 | - | - | 1 | |
| -----------------------------------------------------TCCATGGTTCGTGGCTTG--------------- | 18 | - | - | 1 | |
| rat | cgggcctcactgagaagccgtggggcatgggagagggacttcctgttcTCTTCTCCATGGTTCGTGGCTTGTTTACTAGAacgctc | ||||
| ************************************************************************************** | |||||
| rat | .((((.((...((.((((((((((.(((((..(((((((.....)))).)))..))))).)))))))))).)).....))..)))) | 0.960 -33.30 | |||
| rat | chromosome:12:44299337:44299422:-1 | intergenic |
block233478 [novel_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.043 | no | no | 0.40/0.56 | 18/24/0.70 | 0.0 1.9 | 0.0 1.1 | 2 8 | 0 0 | 1 3 | 0 0 | 19 6 | 4 9 | 3arm 3arm | 2 2 | nd nd | 0.16 0.11 | 2 1 | 10 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------GGUUCGU--------------------- | 4 | novel | ||
| seed | ------------------------------------------------------CCAUGGU------------------------- | 3 | novel | ||
| seed | -------------------------------------------------CUUCUCC------------------------------ | 2 | miR-207 | ||
| seed | -------------------------------------------------------------UCGUGGC------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ---------------------------------------------------------TGGTTCGTGGCTTGTTTACT--------- | 20 | 1 | - | 3 | |
| -----------------------------------------------------TCCATGGTTCGTGGCTTGTTTACT--------- | 24 | - | 1 | 1 | |
| ------------------------------------------------TCTTCTCCATGGTTCGTGG------------------- | 19 | - | - | 2 | |
| ------------------------------------------------------------TTCGTGGCTTGTTTACTAGA------ | 20 | - | - | 1 | |
| -----------------------------------------------------TCCATGGTTCGTGGCTTG--------------- | 18 | - | - | 1 | |
| rat | cgggcctcactgagaagccgtggggcatgggagagggacttcctgttcTCTTCTCCATGGTTCGTGGCTTGTTTACTAGAacgctc | ||||
| ************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | ||||
| rat | .((((.((...((.((((((((((.(((((..(((((((.....)))).)))..))))).)))))))))).)).....))..)))) | 0.960 -33.30 | |||
| rat | chromosome:12:43043695:43043780:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
block1060837 [novel_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.293 | no | no | 0.44/0.68 | 18/25/0.75 | 0.0 3.1 | 0.9 2.9 | 10 7 | 0 0 | 1 2 | 0 0 | 24 12 | 9 17 | 3arm 3arm | 1 1 | nd nd | 0.17 0.27 | 2 2 | 20 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------GGACAAA--------------------------------------- | 11 | novel | |
| seed | ----------------------------------------------------------------------------------------GUCAGCA------------------------- | 3 | novel | |
| seed | ----------------------------------------------------------------------------------GGGAAUG------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------------------------------------GAAUGUC----------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------------------------ACAAAUG------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------GACAAAU-------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| -------------------------------------------------------------------------GGGACAAATGGGAATGTCAG--------------------------- | 20 | - | 7 | |
| -------------------------------------------------------------------------GGGACAAATGGGAATGTCAGCAG------------------------ | 23 | - | 3 | |
| ---------------------------------------------------------------------------------TGGGAATGTCAGCAGCCACAGC----------------- | 22 | - | 2 | |
| -----------------------------------------------------------------------------------GGAATGTCAGCAGCCACAGCCCCTC------------ | 25 | - | 2 | |
| --------------------------------------------------------------------------GGACAAATGGGAATGTCA---------------------------- | 18 | - | 1 | |
| -------------------------------------------------------------------------GGGACAAATGGGAATGTCAGCA------------------------- | 22 | - | 1 | |
| ---------------------------------------------------------------------------------------TGTCAGCAGCCACAGCCCC-------------- | 19 | 1 | - | |
| ---------------------------------------------------------------------------GACAAATGGGAATGTCAGCA------------------------- | 20 | - | 1 | |
| ---------------------------------------------------------------------------------------TGTCAGCAGCCACAGCCCCTC------------ | 21 | - | 1 | |
| ---------------------------------------------------------------------------------------TGTCAGCAGCCACAGCCC--------------- | 18 | - | 1 | |
| rat | tgagtcttagatgagtggaaaggtgctgtgtgcatcctgtgacatctgtcccagagttggctgagccacatgaGGGACAAATGGGAATGTCAGCAGccacagcccctcgggcaggcgtcg | |||
| ************************************************************************************************************************ | ||||
| rat | .((((((....((((.((....(((((((..(((((((((......((((((.....((((...)))).....)))))).)))))).)))..))))).))..)).))))...)))).)). | 0.440 -40.60 | ||
| rat | chromosome:20:5518585:5518704:-1 | intergenic |
block1093443 [novel_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.060 | no | no | 0.37/0.43 | 19/23/0.74 | 1.3 | 0.3 | 26 | 0 | 3 | 0 | 7 | 1 | 5arm_loop_3arm | 1 | nd | 0.21 | 1 | 34 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------CAACAGA--------------------------------------------------- | 14 | novel | ||
| seed | --------CUCAACA----------------------------------------------------- | 8 | novel | ||
| seed | -------------CAGAAUA------------------------------------------------ | 7 | novel | ||
| seed | --------------AGAAUAU----------------------------------------------- | 2 | novel | ||
| seed | -----------AACAGAA-------------------------------------------------- | 1 | novel | ||
| seed | ------------ACAGAAU------------------------------------------------- | 1 | novel | ||
| seed | -----------------AUAUCAG-------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S1 | T5S1 | |||
| ---------TCAACAGAATATCAGACGAGA-------------------------------------- | 21 | 1 | - | 13 | |
| ------------ACAGAATATCAGACGAGAT------------------------------------- | 19 | - | - | 7 | |
| -------TCTCAACAGAATATCAGACGAGA-------------------------------------- | 23 | - | - | 6 | |
| -------------CAGAATATCAGACGAGATAGGAG-------------------------------- | 23 | - | - | 2 | |
| ----------------AATATCAGACGAGATAGGAGTG------------------------------ | 22 | 1 | - | - | |
| -------TCTCAACAGAATATCAGACG----------------------------------------- | 20 | - | 1 | - | |
| ----------CAACAGAATATCAGACGAGA-------------------------------------- | 20 | - | - | 1 | |
| -------TCTCAACAGAATATCAGAC------------------------------------------ | 19 | - | - | 1 | |
| -----------AACAGAATATCAGACGAGA-------------------------------------- | 19 | - | - | 1 | |
| rat | agagcccTCTCAACAGAATATCAGACGAGATaggagtggttctctgagaattctcgacagtgggcact | ||||
| ******************************************************************** | |||||
| rat | ...((((.((....(((((.(((((.(((.((....)).))))))))..)))))....)).))))... | 0.940 -18.80 | |||
| rat | chromosome:20:5535574:5535641:1 | intergenic |
block1487667 [novel_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.620 | no | no | 0.40/0.53 | 19/26/0.77 | 3.3 | 1.6 | 13 | 0 | 4 | 0 | 19 | 5 | 5arm | 1 | nd | 0.21 | 3 | 13 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------AAGAGUA------------------------------------------------------------------------------- | 6 | novel | |||
| seed | -------------------------ACAUAAG----------------------------------------------------------------------------------- | 3 | novel | |||
| seed | --------------------GAGAGAC---------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------AGACAUA------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------------AGUAGAC---------------------------------------------------------------------------- | 1 | miR-411 | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S1 | |||
| ----------------------------TAAGAGTAGACTTGGACCAC------------------------------------------------------------------- | 20 | 1 | 1 | - | 3 | |
| ------------------------GACATAAGAGTAGACTTGGACCAC------------------------------------------------------------------- | 24 | - | - | - | 3 | |
| -------------------TGAGAGACATAAGAGTAGAC---------------------------------------------------------------------------- | 20 | 1 | - | - | 1 | |
| ----------------------GAGACATAAGAGTAGACTTGGACCAC------------------------------------------------------------------- | 26 | - | - | - | 1 | |
| -------------------------------GAGTAGACTTGGACCACGT----------------------------------------------------------------- | 19 | - | - | 1 | - | |
| ----------------------------TAAGAGTAGACTTGGACCA-------------------------------------------------------------------- | 19 | - | 1 | - | - | |
| rat | cccaaggaagccaagaaacTGAGAGACATAAGAGTAGACTTGGACCACGTaagatgcagtcagtgagtcacagagagctcttctgtcccttcctcccatcctctaaagcctttgg | |||||
| ******************************************************************************************************************* | ||||||
| rat | .((((((..((..(((....(((.((((.((((((...(((.((((((....(((...))).))).)))...))).)))))).)))).....)))......)))...)))))))) | 0.910 -25.30 | ||||
| rat | chromosome:3:115212859:115212973:1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH (9 loci)
block209319 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.476 | no | no | 0.42/0.55 | 18/26/0.16 | 0.0 0.0 | 0.2 0.0 | 5 34 | 0 0 | 3 6 | 0 0 | 3 8 | -4 -8 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.37 0.58 | 4 9 | 58 | 7 | 0 | 1 |
| reads | miRBase family seed | ||||||||
| seed | ---------ACACAUU----------------------------------------- | 42 | novel | ||||||
| seed | ----------------GAGACCA---------------------------------- | 6 | novel | ||||||
| seed | ----CCGCUAC---------------------------------------------- | 5 | novel | ||||||
| seed | ------------------------CGUACCU-------------------------- | 3 | novel | ||||||
| seed | -----------------------------CUCAGAG--------------------- | 1 | novel | ||||||
| seed | ---------------------------ACCUCAG----------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T2S2 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| --------TACACATTGAGACCAACGT------------------------------ | 19 | 2 | 2 | - | - | 3 | 34 | - | |
| ---TCCGCTACACATTGAGACCA---------------------------------- | 20 | - | 1 | - | - | - | 3 | - | |
| ---------------TGAGACCAACGTACCTCAGAGATGTC---------------- | 26 | - | - | - | - | - | 3 | - | |
| ---------------TGAGACCAACGTACCTCAGAGA-------------------- | 22 | - | - | - | - | - | 2 | - | |
| -----------------------ACGTACCTCAGAGATGTC---------------- | 18 | - | - | - | - | - | 2 | - | |
| ----------------------------CCTCAGAGATGTCGCTTGTC--------- | 20 | - | - | - | - | - | 1 | - | |
| -----------------------ACGTACCTCAGAGATGTCG--------------- | 19 | - | - | - | - | - | - | 1 | |
| --------TACACATTGAGACCAACGTACCTC------------------------- | 24 | - | - | - | - | - | 1 | - | |
| --------------------------TACCTCAGAGATGTCGCTT------------ | 19 | 1 | - | - | - | - | - | - | |
| ---------------TGAGACCAACGTACCTCAGAG--------------------- | 21 | - | - | - | 1 | - | - | - | |
| ---TCCGCTACACATTGAGACC----------------------------------- | 19 | - | - | 1 | - | - | - | - | |
| rat | ccctccgcTACACATTGAGACCAACGTacctcagagatgtcgcttgtcctggtggga | ||||||||
| ********************************************************* | |||||||||
| rat | (((.((((.(((..(((((..........)))))...))).)).......)).))). | 0.600 -11.81 | |||||||
| rat | chromosome:12:5628723:5628779:1 | intergenic |
block2153341 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.134 | no | no | 0.37/0.50 | 19/23/0.15 | 0.7 0.9 | 0.7 0.9 | 3 38 | 0 0 | 2 4 | 0 0 | 18 30 | -6 -17 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.45 0.47 | 5 6 | 53 | 4 | 0 | -1 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------AUCAUGU-------------------------------------------------------- | 22 | novel | |||
| seed | -------------------------------CUAUCAU---------------------------------------------------------- | 20 | novel | |||
| seed | ----------------------------CCUCUAU------------------------------------------------------------- | 4 | novel | |||
| seed | ---------------------GGCUCCU-------------------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------------UAUCAUG--------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------CUCCUCU--------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------CAUGUUA------------------------------------------------------ | 1 | novel | |||
| seed | --------------------------------------GUUAGCG--------------------------------------------------- | 1 | novel | |||
| seed | -------------------CUGGCUC---------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T4S1 | T5S1 | |||
| --------------------------------TATCATGTTAGCGGGAAAT--------------------------------------------- | 19 | - | 1 | 1 | 20 | |
| ------------------------------TCTATCATGTTAGCGGGAA----------------------------------------------- | 19 | 1 | 1 | - | 18 | |
| ---------------------------TCCTCTATCATGTTAGCGGGAAA---------------------------------------------- | 23 | - | - | - | 4 | |
| --------------------TGGCTCCTCCTCTATCATGT-------------------------------------------------------- | 20 | - | - | - | 2 | |
| ----------------------------------TCATGTTAGCGGGAAATTCC------------------------------------------ | 20 | - | - | - | 1 | |
| -------------------------CCTCCTCTATCATGTTAGC---------------------------------------------------- | 19 | - | - | - | 1 | |
| -------------------------------------TGTTAGCGGGAAATTCCAG---------------------------------------- | 19 | - | - | - | 1 | |
| -------------------------------CTATCATGTTAGCGGGAAA---------------------------------------------- | 19 | - | - | - | 1 | |
| ------------------TCTGGCTCCTCCTCTATCAT---------------------------------------------------------- | 20 | - | - | 1 | - | |
| rat | ctgtgaggtgtggttcactctggctcctccTCTATCATGTTAGCGGGAAATtccagacccctctcctttctcccttccttgtctgcagctcccaga | |||||
| ************************************************************************************************ | ||||||
| rat | (((.(((.(((((.....(((((....(((((((......))).))))....))))).........................))))).))).))). | 0.800 -21.51 | ||||
| rat | chromosome:7:116624715:116624810:-1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 30999 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.