other hairpins
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH (9 loci)
block234888 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.823 | no | no | 0.47/0.58 | 18/23/0.15 | 0.7 0.0 | 1.7 0.0 | 3 31 | 0 0 | 1 4 | 0 0 | 24 37 | -9 -17 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.37 0.63 | 5 10 | 52 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | --------------------------------------GUGAAAC---------------------------------------------------- | 36 | novel | |||
| seed | ------------------------------------GUGUGAA------------------------------------------------------ | 6 | novel | |||
| seed | ----------------------------------------GAAACGA-------------------------------------------------- | 5 | novel | |||
| seed | ---------------------------CACCGUG--------------------------------------------------------------- | 2 | novel | |||
| seed | ------------------------------------------AACGAGC------------------------------------------------ | 1 | novel | |||
| seed | -------------------------GUCACCG----------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------UGAAACG--------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T4S2 | T5S1 | |||
| -------------------------------------TGTGAAACGAGCCAGAACG----------------------------------------- | 19 | 3 | 1 | - | 31 | |
| ---------------------------------------TGAAACGAGCCAGAACGGG--------------------------------------- | 19 | - | - | 1 | 4 | |
| -----------------------------------TGTGTGAAACGAGCCAGAAC------------------------------------------ | 20 | - | - | - | 5 | |
| --------------------------TCACCGTGTTGTGTGAAACGAG------------------------------------------------- | 22 | - | - | - | 2 | |
| -----------------------------------------AAACGAGCCAGAACGGGGAACGT--------------------------------- | 23 | - | - | - | 1 | |
| -----------------------------------TGTGTGAAACGAGCCAGA-------------------------------------------- | 18 | - | - | 1 | - | |
| -------------------------------------TGTGAAACGAGCCAGAAC------------------------------------------ | 18 | - | - | - | 1 | |
| --------------------------------------GTGAAACGAGCCAGAACGG---------------------------------------- | 19 | - | - | - | 1 | |
| ------------------------TGTCACCGTGTTGTGTGAA------------------------------------------------------ | 19 | - | - | - | 1 | |
| rat | gaggaggtgatggagtcggacgggtgtcaccgtgttgTGTGAAACGAGCCAGAACGgggaacgtgagcgcctggggaatgttgggtttttaagtcct | |||||
| ************************************************************************************************* | ||||||
| rat | .((((..(((.(((.((((.(((((((((((.((((.((..........)).)))).))....))).)))))).......)))).))))))..)))) | 0.440 -23.10 | ||||
| rat | chromosome:12:44305959:44306055:1 | intergenic |
sblock10906 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.347 | no | no | 0.43/0.74 | 18/25/0.16 | 0.0 0.0 2.2 | 0.0 0.0 1.2 | 1 40 5 | 0 0 0 | 1 7 1 | 0 0 0 | 7 22 1 | -4 -12 3 | 5arm_loop 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.37 0.68 0.50 | 5 11 6 | 70 | 7 | 0 | -23 |
| reads | miRBase family seed | ||||||||
| seed | -----------------------CCCUCAG--------------------------------- | 54 | miR-760 | ||||||
| seed | ---------------------------CAGAUCU----------------------------- | 3 | novel | ||||||
| seed | --------------------------------------AGUUAGC------------------ | 3 | novel | ||||||
| seed | --------------------CCUCCCU------------------------------------ | 3 | novel | ||||||
| seed | -------------------------CUCAGAU------------------------------- | 2 | novel | ||||||
| seed | -------------------------------------------GCCUCCA------------- | 1 | novel | ||||||
| seed | --------GCUCGCU------------------------------------------------ | 1 | novel | ||||||
| seed | --------------------------------------------CCUCCAC------------ | 1 | novel | ||||||
| seed | ---------------------CUCCCUC----------------------------------- | 1 | miR-343 | ||||||
| seed | ----------------------------------GGAUAGU---------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| ----------------------TCCCTCAGATCTGGATAGT---------------------- | 19 | 3 | 2 | - | - | 1 | 40 | - | |
| ----------------------TCCCTCAGATCTGGATAG----------------------- | 18 | 1 | - | 1 | - | - | 5 | - | |
| --------------------------TCAGATCTGGATAGTTAGCCTCCAC------------ | 25 | - | - | - | - | - | 3 | - | |
| -------------------------------------TAGTTAGCCTCCACAGCACCCT---- | 22 | - | - | - | - | - | 3 | - | |
| ------------------------CCTCAGATCTGGATAGTTAG------------------- | 20 | - | - | - | - | - | 2 | - | |
| -------------------TCCTCCCTCAGATCTGGATAG----------------------- | 21 | - | - | - | 1 | - | 1 | - | |
| -------TGCTCGCTGGCCTCCTCCC------------------------------------- | 19 | 1 | - | - | - | - | - | - | |
| ----------------------TCCCTCAGATCTGGATAGTTA-------------------- | 21 | - | - | - | - | - | 1 | - | |
| ------------------------------------------AGCCTCCACAGCACCCTGAG- | 20 | - | - | - | - | - | 1 | - | |
| -------------------TCCTCCCTCAGATCTGGATA------------------------ | 20 | - | - | - | - | - | - | 1 | |
| --------------------CCTCCCTCAGATCTGGATAG----------------------- | 20 | - | - | - | - | - | 1 | - | |
| ---------------------------------TGGATAGTTAGCCTCCACA----------- | 19 | - | - | - | - | - | 1 | - | |
| -------------------------------------------GCCTCCACAGCACCCTGAG- | 19 | - | - | - | - | - | 1 | - | |
| rat | ctcctcctgctcgctggcctccTCCCTCAGATCTGGATAGTtagcctccacagcaccctgagt | ||||||||
| *************************************************************** | |||||||||
| rat | (((....((((.((((((.(((............)))..))))))......))))....))). | 0.950 -11.50 | |||||||
| rat | chromosome:7:96051848:96051910:-1 | intergenic |
sblock11631 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.222 | no | no | 0.28/0.65 | 18/26/0.34 | 0.3 0.0 0.0 2.5 | 0.0 0.0 0.0 2.6 | 10 54 1 8 | 0 0 0 0 | 3 5 1 3 | 0 0 0 0 | 10 48 20 0 | 16 -17 0 20 | 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.43 0.42 0.38 0.35 | 4 3 3 5 | 108 | 6 | 2 | 4 |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------------------GCAACAA------------------------------------------- | 64 | novel | |||||
| seed | ------------------------------------------------UGCAACA-------------------------------------------- | 12 | novel | |||||
| seed | ------------CCUUCAG-------------------------------------------------------------------------------- | 8 | novel | |||||
| seed | ---------------------------------------------CUUUGCA----------------------------------------------- | 4 | novel | |||||
| seed | --------------------------------------------------------------------------CCUUCAG------------------ | 4 | novel | |||||
| seed | -----------UCCUUCA--------------------------------------------------------------------------------- | 4 | novel | |||||
| seed | ----------UUCCUUC---------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | --------------------------------------------------------------------------------GUGCACA------------ | 2 | novel | |||||
| seed | ---GGUUUCU----------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------------------------------------------UCAGUGC--------------- | 1 | novel | |||||
| seed | --------------UUCAGCA------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | -------------------------------------------------------------------------------AGUGCAC------------- | 1 | novel | |||||
| seed | -----------------------------------------------UUGCAAC--------------------------------------------- | 1 | novel | |||||
| seed | ------UUCUUUC-------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------AAAGUUA-------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T5S1 | T5S2 | |||
| ------------------------------------------------TGCAACAAAGTTAAGCTGA-------------------------------- | 19 | 6 | 3 | - | 1 | 54 | - | |
| -----------------------------------------------TTGCAACAAAGTTAAGCTGA-------------------------------- | 20 | - | - | 2 | - | 10 | - | |
| -----------TCCTTCAGCACTCGATGATGAGA----------------------------------------------------------------- | 23 | 1 | - | - | - | 7 | - | |
| ----------TTCCTTCAGCACTCGATGATGAGA----------------------------------------------------------------- | 24 | - | - | 1 | - | 3 | - | |
| -------------------------------------------------------------------------TCCTTCAGTGCACAGGTCCC------ | 20 | - | 2 | - | - | - | 1 | |
| -------------------------------------------------------------------------------AGTGCACAGGTCCCTCCAGC | 20 | - | - | - | - | 2 | - | |
| ---------TTTCCTTCAGCACTCGATGATGAGA----------------------------------------------------------------- | 25 | - | - | - | - | 2 | - | |
| --------------------------------------------TCTTTGCAACAAAGTTAA------------------------------------- | 18 | - | - | - | - | 1 | - | |
| --------------------------------------------TCTTTGCAACAAAGTTAAG------------------------------------ | 19 | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------------CAGTGCACAGGTCCCTCCA-- | 19 | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------TCCTTCAGTGCACAGGTCCCTC---- | 22 | - | - | - | - | 1 | - | |
| ----------------------------------------------TTTGCAACAAAGTTAAGCTGA-------------------------------- | 21 | - | - | - | - | 1 | - | |
| --TGGTTTCTTTCCTTCAGCACTC--------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| -----------------------------------------------------CAAAGTTAAGCTGATAGACCTCCTTC-------------------- | 26 | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------------TTCAGTGCACAGGTCCCTCC--- | 20 | - | - | - | - | 1 | - | |
| --TGGTTTCTTTCCTTCAGC------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| -----TTTCTTTCCTTCAGCACTCGATGA---------------------------------------------------------------------- | 24 | - | - | - | - | 1 | - | |
| -------------CTTCAGCACTCGATGATGAGA----------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | |
| --------------------------------------------TCTTTGCAACAAAGTTAAGC----------------------------------- | 20 | - | - | - | - | 1 | - | |
| --------------------------------------------TCTTTGCAACAAAGTTAAGCTGA-------------------------------- | 23 | - | - | - | - | 1 | - | |
| rat | actggtttctttccttcagcactcgatgatgagatagtatcttctcttTGCAACAAAGTTAAGCTGAtagacctccttcagtgcacaggtccctccagc | |||||||
| *************************************************************************************************** | ||||||||
| rat | .((((.......(((...(((((.((....(((....((((..(((((((...)))))...))..))))...)))..)))))))..))).....)))). | 0.710 -20.30 | ||||||
| rat | chromosome:8:57719362:57719460:-1 | intergenic |
sblock5020 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.120 | no | no | 0.27/0.60 | 18/25/0.35 | 1.7 0.6 0.0 0.0 1.3 | 4.8 1.4 0.0 0.0 3.3 | 6 29 1 1 6 | 0 0 0 0 0 | 2 4 1 1 2 | 0 0 0 0 0 | 22 37 48 31 12 | 8 -5 -10 1 14 | 5arm 5arm_loop 5arm_loop_3arm 3arm 3arm | 2 2 2 2 2 | nd nd nd nd nd | 0.39 0.42 0.67 0.52 0.56 | 4 4 7 4 9 | 51 | 4 | 20 | 0 |
| reads | miRBase family seed | |||||
| seed | --------------------------------------GUCAGUU--------------------------------------------------------------------------- | 23 | miR-223 | |||
| seed | ----------------------------------------CAGUUAG------------------------------------------------------------------------- | 11 | novel | |||
| seed | ------------------------------------------------------------------------------------AAGUCAU----------------------------- | 4 | novel | |||
| seed | -----------------------AAAGCCC------------------------------------------------------------------------------------------ | 3 | novel | |||
| seed | ------------------------------------------------------------------------------GACUUCA----------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------GAAAGAU---------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------UGUCAGU---------------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------------------------UCAAGUC------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------CCGUAGU------------------------------------------------ | 1 | novel | |||
| seed | -----------------------------------GUUGUCA------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ------------------------AAGCCCU----------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------GCCCUCA--------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------CUCAUUG------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | -----------------------------------------AGUUAGA------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S1 | |||
| -------------------------------------TGTCAGTTAGATGAAAGAT---------------------------------------------------------------- | 19 | 1 | 1 | - | 21 | |
| ---------------------------------------TCAGTTAGATGAAAGATATTCA----------------------------------------------------------- | 22 | - | 1 | 1 | 8 | |
| -----------------------------------------------------------------------------------CAAGTCATGGCCTTCTCGCTGCTCC------------ | 25 | - | - | 1 | 2 | |
| -----------------------------------------------------------------------------------CAAGTCATGGCCTTCTCGCTG---------------- | 21 | - | - | - | 1 | |
| ----------------------------CCTCATTGTTGTCAGTTAGA------------------------------------------------------------------------ | 20 | - | - | - | 1 | |
| ---------------------------------------------------------------------------------TTCAAGTCATGGCCTTCTC-------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------TCAGTTAGATGAAAGATA--------------------------------------------------------------- | 18 | - | - | - | 1 | |
| ----------------------TAAAGCCCTCATTGTTGTCAG----------------------------------------------------------------------------- | 21 | - | - | - | 1 | |
| ----------------------TAAAGCCCTCATTGTTGT-------------------------------------------------------------------------------- | 18 | - | 1 | - | - | |
| ----------------------TAAAGCCCTCATTGTTGTCA------------------------------------------------------------------------------ | 20 | - | - | - | 1 | |
| ----------------------------------------------------------------TCCGTAGTTGCTCTGACTTCAAGTC------------------------------- | 25 | - | - | - | 1 | |
| ----------------------------------TGTTGTCAGTTAGATGAAAGA----------------------------------------------------------------- | 21 | - | - | - | 1 | |
| -----------------------AAAGCCCTCATTGTTGTCAGTTAGA------------------------------------------------------------------------ | 25 | - | - | - | 1 | |
| -------------------------AGCCCTCATTGTTGTCAGTTAGA------------------------------------------------------------------------ | 23 | - | - | - | 1 | |
| ------------------------------------TTGTCAGTTAGATGAAAGA----------------------------------------------------------------- | 19 | - | - | - | 1 | |
| ------------------------------------------------TGAAAGATATTCATAGTC------------------------------------------------------ | 18 | - | - | - | 1 | |
| -----------------------------------------------------------------------------TGACTTCAAGTCATGGCCTTCTC-------------------- | 23 | - | - | - | 1 | |
| ----------------------------------------CAGTTAGATGAAAGATATTCA----------------------------------------------------------- | 21 | - | - | - | 1 | |
| rat | tgtctgccatgcctggggcccctaaagccctcattgtTGTCAGTTAGATGAAAGATATTCAtagtccgtagttgctctgacttcaagtcatggccttctcgctgctccaggactgcagca | |||||
| ************************************************************************************************************************ | ||||||
| rat | ((.((((....((((((((.......(((....(((..(((((...(((....(((.......)))....)))...)))))..))).....))).........))))))))...)))))) | 0.540 -34.69 | ||||
| rat | chromosome:17:17525515:17525634:-1 | intergenic |
sblock5031 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.120 | no | no | 0.27/0.60 | 18/25/0.35 | 1.7 0.6 0.0 0.0 1.3 | 4.8 1.4 0.0 0.0 3.3 | 6 29 1 1 6 | 0 0 0 0 0 | 2 4 1 1 2 | 0 0 0 0 0 | 22 37 48 31 12 | 8 -5 -10 1 14 | 5arm 5arm_loop 5arm_loop_3arm 3arm 3arm | 2 2 2 2 2 | nd nd nd nd nd | 0.39 0.42 0.67 0.52 0.56 | 4 4 7 4 9 | 51 | 4 | 20 | 0 |
| reads | miRBase family seed | |||||
| seed | --------------------------------------GUCAGUU--------------------------------------------------------------------------- | 23 | miR-223 | |||
| seed | ----------------------------------------CAGUUAG------------------------------------------------------------------------- | 11 | novel | |||
| seed | ------------------------------------------------------------------------------------AAGUCAU----------------------------- | 4 | novel | |||
| seed | -----------------------AAAGCCC------------------------------------------------------------------------------------------ | 3 | novel | |||
| seed | ------------------------------------------------------------------------------GACUUCA----------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------GAAAGAU---------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------UGUCAGU---------------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------------------------UCAAGUC------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------CCGUAGU------------------------------------------------ | 1 | novel | |||
| seed | -----------------------------------GUUGUCA------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ------------------------AAGCCCU----------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | --------------------------GCCCUCA--------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------CUCAUUG------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | -----------------------------------------AGUUAGA------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S1 | |||
| -------------------------------------TGTCAGTTAGATGAAAGAT---------------------------------------------------------------- | 19 | 1 | 1 | - | 21 | |
| ---------------------------------------TCAGTTAGATGAAAGATATTCA----------------------------------------------------------- | 22 | - | 1 | 1 | 8 | |
| -----------------------------------------------------------------------------------CAAGTCATGGCCTTCTCGCTGCTCC------------ | 25 | - | - | 1 | 2 | |
| -----------------------------------------------------------------------------------CAAGTCATGGCCTTCTCGCTG---------------- | 21 | - | - | - | 1 | |
| ----------------------------CCTCATTGTTGTCAGTTAGA------------------------------------------------------------------------ | 20 | - | - | - | 1 | |
| ---------------------------------------------------------------------------------TTCAAGTCATGGCCTTCTC-------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------TCAGTTAGATGAAAGATA--------------------------------------------------------------- | 18 | - | - | - | 1 | |
| ----------------------TAAAGCCCTCATTGTTGTCAG----------------------------------------------------------------------------- | 21 | - | - | - | 1 | |
| ----------------------TAAAGCCCTCATTGTTGT-------------------------------------------------------------------------------- | 18 | - | 1 | - | - | |
| ----------------------TAAAGCCCTCATTGTTGTCA------------------------------------------------------------------------------ | 20 | - | - | - | 1 | |
| ----------------------------------------------------------------TCCGTAGTTGCTCTGACTTCAAGTC------------------------------- | 25 | - | - | - | 1 | |
| ----------------------------------TGTTGTCAGTTAGATGAAAGA----------------------------------------------------------------- | 21 | - | - | - | 1 | |
| -----------------------AAAGCCCTCATTGTTGTCAGTTAGA------------------------------------------------------------------------ | 25 | - | - | - | 1 | |
| -------------------------AGCCCTCATTGTTGTCAGTTAGA------------------------------------------------------------------------ | 23 | - | - | - | 1 | |
| ------------------------------------TTGTCAGTTAGATGAAAGA----------------------------------------------------------------- | 19 | - | - | - | 1 | |
| ------------------------------------------------TGAAAGATATTCATAGTC------------------------------------------------------ | 18 | - | - | - | 1 | |
| -----------------------------------------------------------------------------TGACTTCAAGTCATGGCCTTCTC-------------------- | 23 | - | - | - | 1 | |
| ----------------------------------------CAGTTAGATGAAAGATATTCA----------------------------------------------------------- | 21 | - | - | - | 1 | |
| rat | tgtctgccatgcctggggcccctaaagccctcattgtTGTCAGTTAGATGAAAGATATTCAtagtccgtagttgctctgacttcaagtcatggccttctcgctgctccaggactgcagca | |||||
| ************************************************************************************************************************ | ||||||
| rat | ((.((((....((((((((.......(((....(((..(((((...(((....(((.......)))....)))...)))))..))).....))).........))))))))...)))))) | 0.540 -34.69 | ||||
| rat | chromosome:17:17534466:17534585:-1 | intergenic |
sblock6053 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.365 | no | no | 0.28/0.53 | 18/25/0.43 | 0.0 0.9 | 0.0 0.0 | 22 16 | 0 0 | 6 6 | 0 0 | 6 23 | 20 -7 | 5arm 3arm_loop | 1 1 | nd nd | 0.32 0.42 | 5 4 | 58 | 8 | 0 | 20 |
| reads | miRBase family seed | |||||||||
| seed | -------AAAAUGA------------------------------------------------------------------------------- | 26 | novel | |||||||
| seed | -------------------------------------------------ACGCCAU------------------------------------- | 11 | novel | |||||||
| seed | ----------------------------------------------AAAACGC---------------------------------------- | 5 | novel | |||||||
| seed | -----------------------------------------------AAACGCC--------------------------------------- | 5 | novel | |||||||
| seed | ------------------------------------------------AACGCCA-------------------------------------- | 3 | novel | |||||||
| seed | ----------------------------------------------------CCAUCCA---------------------------------- | 3 | novel | |||||||
| seed | --------------------------------------------------CGCCAUC------------------------------------ | 2 | novel | |||||||
| seed | ------GAAAAUG-------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ----------AUGAUGA---------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ---------------------------------------------AAAAACG----------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------GAAAATGATGAATTCTGGG-------------------------------------------------------------------- | 19 | - | 1 | - | - | 6 | 5 | 11 | 2 | |
| ------------------------------------------------AACGCCATCCATTTCCTGACTC----------------------- | 22 | 1 | - | - | - | 5 | 4 | - | - | |
| ----------------------------------------------AAAACGCCATCCATTTCCTGACTC----------------------- | 24 | - | - | - | - | 1 | 3 | - | - | |
| ---------------------------------------------------GCCATCCATTTCCTGACTC----------------------- | 19 | - | - | - | - | 1 | 2 | - | - | |
| -----------------------------------------------AAACGCCATCCATTTCCTGACTC----------------------- | 23 | - | - | - | - | 1 | 1 | - | - | |
| -------------------------------------------------ACGCCATCCATTTCCTGACTC----------------------- | 21 | - | - | - | - | - | 2 | - | - | |
| ---------------------------------------------AAAAACGCCATCCATTTCCTGACTC----------------------- | 25 | - | - | - | 1 | 1 | - | - | - | |
| ---------------------------------------------AAAAACGCCATCCATTTCCTG--------------------------- | 21 | - | - | - | - | 1 | - | - | - | |
| ------GAAAATGATGAATTCTGGGGC------------------------------------------------------------------ | 21 | - | - | - | 1 | - | - | - | - | |
| ------------------------------------------------AACGCCATCCATTTCCTGAC------------------------- | 20 | - | - | - | - | - | 1 | - | - | |
| ---------------------------------------------AAAAACGCCATCCATTTCCTGAC------------------------- | 23 | - | - | - | - | - | 1 | - | - | |
| -----TGAAAATGATGAATTCTG---------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | |
| ----------------------------------------------AAAACGCCATCCATTTCCTGACT------------------------ | 23 | - | - | - | - | - | 1 | - | - | |
| ---------AATGATGAATTCTGGGGC------------------------------------------------------------------ | 18 | - | - | - | - | 1 | - | - | - | |
| ---------------------------------------------AAAAACGCCATCCATTTCCT---------------------------- | 20 | - | - | 1 | - | - | - | - | - | |
| --------------------------------------------GAAAAACGCCATCCATTTCC----------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------AAACGCCATCCATTTCCT---------------------------- | 18 | - | - | - | - | 1 | - | - | - | |
| rat | gttggtGAAAATGATGAATTCTGGGgcgctgattcatgtgacttgaaaAACGCCATCCATTTCCTGACTCacctcagattcggttcagaaaca | |||||||||
| ********************************************************************************************* | ||||||||||
| rat | (((..((((.....((((.(((((((...(((.(((.(((...((........))..)))....))).)))))))))))))).))))..))). | 0.880 -20.30 | ||||||||
| rat | chromosome:2:84722147:84722239:-1 | intergenic |
sblock7172 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.370 | no | no | 0.26/0.61 | 18/26/0.39 | 0.9 0.0 0.0 0.0 1.5 | 0.9 1.1 0.0 0.5 1.5 | 21 7 16 4 2 | 0 0 0 0 0 | 3 4 2 2 1 | 0 0 0 0 0 | 15 44 28 18 6 | 10 -21 2 12 19 | 5arm_loop 5arm_loop_3arm 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.37 0.48 0.45 0.33 0.32 | 5 4 4 3 5 | 69 | 4 | -12 | -14 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------GGUUCUC---------------------------------------- | 19 | novel | |||
| seed | ----------------UUGAUAU----------------------------------------------------------------------------- | 13 | novel | |||
| seed | ------------------GAUAUUU--------------------------------------------------------------------------- | 11 | novel | |||
| seed | ---------------------------------------------GUCGCCA------------------------------------------------ | 7 | novel | |||
| seed | ----------------------------GUCAUUA----------------------------------------------------------------- | 5 | novel | |||
| seed | ---------------------------------------------------------------GCCUGAC------------------------------ | 4 | novel | |||
| seed | ---------------------AUUUCCU------------------------------------------------------------------------ | 2 | novel | |||
| seed | ------ACAGUGU--------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ------------------------UCCUGUC--------------------------------------------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------------AGCAGGA----------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------------AGGAACC-------------------- | 1 | novel | |||
| seed | ---UAAACAG------------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ---------------UUUGAUA------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T5S1 | |||
| ----------------------------------------------------TGGTTCTCCTTGCCTGACAG---------------------------- | 20 | - | - | - | 16 | |
| ---------------TTTGATATTTCCTGTCATT------------------------------------------------------------------ | 19 | 1 | - | - | 12 | |
| -----------------TGATATTTCCTGTCATTAG---------------------------------------------------------------- | 19 | 1 | - | - | 9 | |
| --------------------------------------------TGTCGCCATGGTTCTCCTTG------------------------------------ | 20 | - | 1 | 1 | 2 | |
| ---------------------------TGTCATTAGCGGCCCCATGTC---------------------------------------------------- | 21 | - | - | - | 3 | |
| --------------------------------------------------------------TGCCTGACAGCAGGAACC-------------------- | 18 | - | - | - | 3 | |
| --------------------------------------------TGTCGCCATGGTTCTCCTT------------------------------------- | 19 | - | - | - | 2 | |
| ---------------------------TGTCATTAGCGGCCCCATG------------------------------------------------------ | 19 | - | - | - | 2 | |
| ----------------------------------------------------TGGTTCTCCTTGCCTGAC------------------------------ | 18 | 1 | - | - | 1 | |
| --------------------TATTTCCTGTCATTAGCGG------------------------------------------------------------- | 19 | 1 | - | - | 1 | |
| ----------------------------------------------------TGGTTCTCCTTGCCTGACAGCA-------------------------- | 22 | - | - | - | 1 | |
| -----------------------TTCCTGTCATTAGCGGCCCCATGTC---------------------------------------------------- | 25 | - | - | - | 1 | |
| -----AACAGTGTCTTTTGATATT---------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| --------------TTTTGATATTTCCTGTCAT------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| -----------------------TTCCTGTCATTAGCGGCCC---------------------------------------------------------- | 19 | - | - | - | 1 | |
| ------------------------------------------------------------------------CAGGAACCTGAGAAGGGTA--------- | 19 | - | - | - | 1 | |
| --------------------------------------------------------------TGCCTGACAGCAGGAACCTG------------------ | 20 | - | 1 | - | - | |
| --------------------------------------------TGTCGCCATGGTTCTCCTTGCCT--------------------------------- | 23 | 1 | - | - | - | |
| ---------------------------------------------------------------------CAGCAGGAACCTGAGAAGGGTATGT------ | 25 | - | - | - | 1 | |
| -----------------TGATATTTCCTGTCATTAGC--------------------------------------------------------------- | 20 | - | - | - | 1 | |
| --TTAAACAGTGTCTTTTGAT------------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| -----AACAGTGTCTTTTGATATTTCCTGTC--------------------------------------------------------------------- | 26 | - | 1 | - | - | |
| rat | gtttaaacagtgtctTTTGATATTTCCTGTCATTAGcggccccatgtcgccaTGGTTCTCCTTGCCTGACAGcaggaacctgagaagggtatgtttgggg | |||||
| **************************************************************************************************** | ||||||
| rat | .(((((((.((..(((((.....(((((((..(((((((..(((((....)))))..))....)).)))..))))))).....)))))..))))))))). | 0.530 -27.00 | ||||
| rat | chromosome:20:5549960:5550059:1 | intergenic |
novel_lenNOK_cloningOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH (9 loci)
block844872 [novel_lenNOK_cloningOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.387 | no | no | 0.47/0.58 | 19/23/0.45 | 1.7 1.7 | 2.7 0.3 | 3 6 | 0 0 | 2 3 | 0 0 | 15 5 | 2 12 | 3arm 3arm | 25 25 | nd nd | 0.36 0.42 | 5 4 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------CCACUGU--------------------- | 4 | novel | |||
| seed | --------------------------------------------------------------------------GUCCCAG---------------- | 4 | novel | |||
| seed | -----------------------------------------------------------AGCAGAA------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------AACUUCC-------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------TCCACTGTCCCAGCACCTGAACT------ | 23 | 1 | - | 1 | 2 | |
| -------------------------------------------------------------------------TGTCCCAGCACCTGAACTA----- | 19 | - | - | - | 4 | |
| ---------------------------------------------------------------GAACTTCCACTGTCCCAGC--------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------TAGCAGAACTTCCACTGTCCCA----------------- | 22 | - | 1 | - | - | |
| ----------------------------------------------------------TAGCAGAACTTCCACTGTC-------------------- | 19 | - | - | - | 1 | |
| rat | atggtcatgtttggctggcaccattgcttcttctttgcatgcactttgataacccctgtagcagaactTCCACTGTCCCAGCACCTGAACTAtccca | |||||
| ************************************************************************************************* | ||||||
| rat | .(((....((((.(((((.((...((.......(((((.((((.............))))))))).....))..)).)))))....))))....))) | 0.460 -16.52 | ||||
| rat | chromosome:1:50355340:50355436:-1 | intergenic |
block845192 [novel_lenNOK_cloningOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.387 | no | no | 0.47/0.58 | 19/23/0.45 | 1.7 1.7 | 2.7 0.3 | 3 6 | 0 0 | 2 3 | 0 0 | 15 5 | 2 12 | 3arm 3arm | 25 25 | nd nd | 0.36 0.42 | 5 4 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------CCACUGU--------------------- | 4 | novel | |||
| seed | --------------------------------------------------------------------------GUCCCAG---------------- | 4 | novel | |||
| seed | -----------------------------------------------------------AGCAGAA------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------AACUUCC-------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------TCCACTGTCCCAGCACCTGAACT------ | 23 | 1 | - | 1 | 2 | |
| -------------------------------------------------------------------------TGTCCCAGCACCTGAACTA----- | 19 | - | - | - | 4 | |
| ---------------------------------------------------------------GAACTTCCACTGTCCCAGC--------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------TAGCAGAACTTCCACTGTCCCA----------------- | 22 | - | 1 | - | - | |
| ----------------------------------------------------------TAGCAGAACTTCCACTGTC-------------------- | 19 | - | - | - | 1 | |
| rat | atggtcatgtttggctggcaccattgcttcttctttgcatgcactttgataacccctgtagcagaactTCCACTGTCCCAGCACCTGAACTAtccca | |||||
| ************************************************************************************************* | ||||||
| rat | .(((....((((.(((((.((...((.......(((((.((((.............))))))))).....))..)).)))))....))))....))) | 0.460 -16.52 | ||||
| rat | chromosome:1:50585857:50585953:-1 | intergenic |
block845223 [novel_lenNOK_cloningOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.387 | no | no | 0.47/0.58 | 19/23/0.45 | 1.7 1.7 | 2.7 0.3 | 3 6 | 0 0 | 2 3 | 0 0 | 15 5 | 2 12 | 3arm 3arm | 25 25 | nd nd | 0.36 0.42 | 5 4 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------CCACUGU--------------------- | 4 | novel | |||
| seed | --------------------------------------------------------------------------GUCCCAG---------------- | 4 | novel | |||
| seed | -----------------------------------------------------------AGCAGAA------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------AACUUCC-------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------TCCACTGTCCCAGCACCTGAACT------ | 23 | 1 | - | 1 | 2 | |
| -------------------------------------------------------------------------TGTCCCAGCACCTGAACTA----- | 19 | - | - | - | 4 | |
| ---------------------------------------------------------------GAACTTCCACTGTCCCAGC--------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------TAGCAGAACTTCCACTGTCCCA----------------- | 22 | - | 1 | - | - | |
| ----------------------------------------------------------TAGCAGAACTTCCACTGTC-------------------- | 19 | - | - | - | 1 | |
| rat | atggtcatgtttggctggcaccattgcttcttctttgcatgcactttgataacccctgtagcagaactTCCACTGTCCCAGCACCTGAACTAtccca | |||||
| ************************************************************************************************* | ||||||
| rat | .(((....((((.(((((.((...((.......(((((.((((.............))))))))).....))..)).)))))....))))....))) | 0.460 -16.52 | ||||
| rat | chromosome:1:50587465:50587561:-1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31000 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.