other hairpins
novel_lenNOK_cloningOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH (9 loci)
block962381 [novel_lenNOK_cloningOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.387 | no | no | 0.47/0.58 | 19/23/0.45 | 1.7 1.7 | 2.7 0.3 | 3 6 | 0 0 | 2 3 | 0 0 | 15 5 | 2 12 | 3arm 3arm | 25 25 | nd nd | 0.36 0.42 | 5 4 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------CCACUGU--------------------- | 4 | novel | |||
| seed | --------------------------------------------------------------------------GUCCCAG---------------- | 4 | novel | |||
| seed | -----------------------------------------------------------AGCAGAA------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------AACUUCC-------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------TCCACTGTCCCAGCACCTGAACT------ | 23 | 1 | - | 1 | 2 | |
| -------------------------------------------------------------------------TGTCCCAGCACCTGAACTA----- | 19 | - | - | - | 4 | |
| ---------------------------------------------------------------GAACTTCCACTGTCCCAGC--------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------TAGCAGAACTTCCACTGTCCCA----------------- | 22 | - | 1 | - | - | |
| ----------------------------------------------------------TAGCAGAACTTCCACTGTC-------------------- | 19 | - | - | - | 1 | |
| rat | atggtcatgtttggctggcaccattgcttcttctttgcatgcactttgataacccctgtagcagaactTCCACTGTCCCAGCACCTGAACTAtccca | |||||
| ************************************************************************************************* | ||||||
| rat | .(((....((((.(((((.((...((.......(((((.((((.............))))))))).....))..)).)))))....))))....))) | 0.460 -16.52 | ||||
| rat | chromosome:1:51422849:51422945:1 | intergenic |
block963274 [novel_lenNOK_cloningOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.387 | no | no | 0.47/0.58 | 19/23/0.45 | 1.7 1.7 | 2.7 0.3 | 3 6 | 0 0 | 2 3 | 0 0 | 15 5 | 2 12 | 3arm 3arm | 25 25 | nd nd | 0.36 0.42 | 5 4 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------CCACUGU--------------------- | 4 | novel | |||
| seed | --------------------------------------------------------------------------GUCCCAG---------------- | 4 | novel | |||
| seed | -----------------------------------------------------------AGCAGAA------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------AACUUCC-------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------TCCACTGTCCCAGCACCTGAACT------ | 23 | 1 | - | 1 | 2 | |
| -------------------------------------------------------------------------TGTCCCAGCACCTGAACTA----- | 19 | - | - | - | 4 | |
| ---------------------------------------------------------------GAACTTCCACTGTCCCAGC--------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------TAGCAGAACTTCCACTGTCCCA----------------- | 22 | - | 1 | - | - | |
| ----------------------------------------------------------TAGCAGAACTTCCACTGTC-------------------- | 19 | - | - | - | 1 | |
| rat | atggtcatgtttggctggcaccattgcttcttctttgcatgcactttgataacccctgtagcagaactTCCACTGTCCCAGCACCTGAACTAtccca | |||||
| ************************************************************************************************* | ||||||
| ----------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040973 ENSRNOG00000033340 RGD1561446_predicted | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046337 ENSRNOG00000033340 RGD1561446_predicted | |||||
| rat | .(((....((((.(((((.((...((.......(((((.((((.............))))))))).....))..)).)))))....))))....))) | 0.460 -16.52 | ||||
| rat | chromosome:1:51653400:51653496:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Same_strand|Boundary_non-coding|ENSRNOT00000048434|ENSRNOG00000033340 ## Same_strand|Intronic_non-coding|ENSRNOT00000046337|ENSRNOG00000033340 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## ENSRNOG00000033340|protein_coding|RGD1561446_predicted| |
block963911 [novel_lenNOK_cloningOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.387 | no | no | 0.47/0.58 | 19/23/0.45 | 1.7 1.7 | 2.7 0.3 | 3 6 | 0 0 | 2 3 | 0 0 | 15 5 | 2 12 | 3arm 3arm | 25 25 | nd nd | 0.36 0.42 | 5 4 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------CCACUGU--------------------- | 4 | novel | |||
| seed | --------------------------------------------------------------------------GUCCCAG---------------- | 4 | novel | |||
| seed | -----------------------------------------------------------AGCAGAA------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------AACUUCC-------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------TCCACTGTCCCAGCACCTGAACT------ | 23 | 1 | - | 1 | 2 | |
| -------------------------------------------------------------------------TGTCCCAGCACCTGAACTA----- | 19 | - | - | - | 4 | |
| ---------------------------------------------------------------GAACTTCCACTGTCCCAGC--------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------TAGCAGAACTTCCACTGTCCCA----------------- | 22 | - | 1 | - | - | |
| ----------------------------------------------------------TAGCAGAACTTCCACTGTC-------------------- | 19 | - | - | - | 1 | |
| rat | atggtcatgtttggctggcaccattgcttcttctttgcatgcactttgataacccctgtagcagaactTCCACTGTCCCAGCACCTGAACTAtccca | |||||
| ************************************************************************************************* | ||||||
| ----------------------------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||||
| rat | .(((....((((.(((((.((...((.......(((((.((((.............))))))))).....))..)).)))))....))))....))) | 0.460 -16.52 | ||||
| rat | chromosome:1:52000747:52000843:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block963920 [novel_lenNOK_cloningOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.377 | no | no | 0.39/0.53 | 18/25/0.63 | 0.0 1.5 | 0.0 0.0 | 1 31 | 0 0 | 1 5 | 0 0 | 31 19 | -8 1 | 3arm_loop 3arm | 21 26 | nd nd | 0.53 0.42 | 7 4 | 41 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ----------------------------------------------------------GUUACAG--------------------------------- | 18 | novel | |||||
| seed | -------------------------------------------------------------ACAGGAU------------------------------ | 12 | novel | |||||
| seed | ------------------------------------------------------------UACAGGA------------------------------- | 5 | novel | |||||
| seed | -----------------------------------------------------CCACUGU-------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------------------------UUACAGG-------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------------------------ACUGUCU------------------- | 1 | novel | |||||
| seed | -------------------------------------------------CUCUCCA------------------------------------------ | 1 | novel | |||||
| seed | ----------------------------------------------------------------GGAUCUC--------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------TGTTACAGGATCTCTACTGTCT------------------- | 22 | 1 | - | 1 | 1 | 14 | - | |
| ------------------------------------------------------------TACAGGATCTCTACTGTCT------------------- | 19 | - | - | - | - | 12 | - | |
| -----------------------------------------------------------TTACAGGATCTCTACTGTCT------------------- | 20 | - | - | - | - | 5 | - | |
| ---------------------------------------------------------------AGGATCTCTACTGTCTTAGGACCA----------- | 24 | 1 | - | - | - | - | - | |
| ------------------------------------------------CCTCTCCACTGTTACAGGA------------------------------- | 19 | - | 1 | - | - | - | - | |
| -----------------------------------------------------------------------TACTGTCTTAGGACCACTGCTGT---- | 23 | - | - | - | - | 1 | - | |
| ----------------------------------------------------TCCACTGTTACAGGATCTCTACT----------------------- | 23 | - | - | - | - | - | 1 | |
| ----------------------------------------------------------GTTACAGGATCTCTACTGTCT------------------- | 21 | - | - | - | - | 1 | - | |
| ----------------------------------------------------TCCACTGTTACAGGATCTCTACTGT--------------------- | 25 | - | - | - | - | 1 | - | |
| ---------------------------------------------------------TGTTACAGGATCTCTACT----------------------- | 18 | - | - | - | - | - | 1 | |
| rat | tctattgttacaaagtagtccactgtcaaaggacctccagtgtctcagcctctccacTGTTACAGGATCTCTACTGTCTtaggaccactgctgttgga | |||||||
| ************************************************************************************************** | ||||||||
| ------------------------------------------------------------------------------------------------------------ | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||||||
| rat | ((((.....(((.(((.((((.....((..(((..(((..(((..(((........)))..))))))..)))..)).....)))).)))..))))))) | 0.530 -18.90 | ||||||
| rat | chromosome:1:52001033:52001130:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block965613 [novel_lenNOK_cloningOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.387 | no | no | 0.47/0.58 | 19/23/0.45 | 1.7 1.7 | 2.7 0.3 | 3 6 | 0 0 | 2 3 | 0 0 | 15 5 | 2 12 | 3arm 3arm | 25 25 | nd nd | 0.36 0.42 | 5 4 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------CCACUGU--------------------- | 4 | novel | |||
| seed | --------------------------------------------------------------------------GUCCCAG---------------- | 4 | novel | |||
| seed | -----------------------------------------------------------AGCAGAA------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------AACUUCC-------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------TCCACTGTCCCAGCACCTGAACT------ | 23 | 1 | - | 1 | 2 | |
| -------------------------------------------------------------------------TGTCCCAGCACCTGAACTA----- | 19 | - | - | - | 4 | |
| ---------------------------------------------------------------GAACTTCCACTGTCCCAGC--------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------TAGCAGAACTTCCACTGTCCCA----------------- | 22 | - | 1 | - | - | |
| ----------------------------------------------------------TAGCAGAACTTCCACTGTC-------------------- | 19 | - | - | - | 1 | |
| rat | atggtcatgtttggctggcaccattgcttcttctttgcatgcactttgataacccctgtagcagaactTCCACTGTCCCAGCACCTGAACTAtccca | |||||
| ************************************************************************************************* | ||||||
| rat | .(((....((((.(((((.((...((.......(((((.((((.............))))))))).....))..)).)))))....))))....))) | 0.460 -16.52 | ||||
| rat | chromosome:1:52861116:52861212:1 | intergenic |
block2684455 [novel_lenNOK_cloningOK_Multihit_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.262 | no | no | 0.42/0.52 | 18/24/0.45 | 1.3 | 2.5 | 11 | 0 | 6 | 0 | 7 | 25 | 3arm | 11 | nd | 0.44 | 4 | 11 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ---------------------------------------------------------------------------------CUACCUC----------------------- | 6 | novel | |||||
| seed | ----------------------------------------------------------------------------------UACCUCA---------------------- | 2 | novel | |||||
| seed | --------------------------------------------------------------------------------ACUACCU------------------------ | 2 | novel | |||||
| seed | ------------------------------------------------------------------------------------CCUCAUG-------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------------------ACTACCTCATGAAGATCCT------------ | 19 | 1 | 1 | - | 1 | 1 | - | |
| -------------------------------------------------------------------------------GACTACCTCATGAAGATCC------------- | 19 | - | - | - | 1 | - | - | |
| --------------------------------------------------------------------------------ACTACCTCATGAAGATCCTGACCC------- | 24 | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------------------------CTACCTCATGAAGATCCTGACCC------- | 23 | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------------------GACTACCTCATGAAGATCCT------------ | 20 | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------------------------CTACCTCATGAAGATCCT------------ | 18 | - | - | - | 1 | - | - | |
| --------------------------------------------------------------------------------ACTACCTCATGAAGATCCTGAC--------- | 22 | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------------------------ACCTCATGAAGATCCTGACC-------- | 20 | - | - | - | - | - | 1 | |
| rat | ttacattgtgcccatctatgagggctatgctgtccctgatgtcatcctccatttggacttgactgactgggacccaacaGACTACCTCATGAAGATCCTGACCCagagtag | |||||||
| *************************************************************************************************************** | ||||||||
| rat | .(((.(((.....((((((((((.((.....(((((....((((...(((....)))..)))).....))))).....))....))))))..)))).......))).))). | 0.440 -27.10 | ||||||
| rat | chromosome:X:32374680:32374790:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_bulgeHIGH (9 loci)
block73278 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.767 | no | no | 0.61/0.68 | 18/24/0.18 | 0.0 2.0 0.7 | 0.0 1.4 0.7 | 1 7 3 | 0 0 0 | 1 3 2 | 0 0 0 | 0 10 22 | 5 -5 -13 | 5arm 5arm_loop 5arm_loop_3arm | 1 3 3 | nd nd nd | 0.29 0.37 0.67 | 4 4 11 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------CAGUGCA---------------------------------------------- | 3 | miR-148b/152 | |||
| seed | -----------------------GCAGGAU--------------------------------------- | 2 | novel | |||
| seed | ------------CAGCCAG-------------------------------------------------- | 2 | novel | |||
| seed | -UCGUCUG------------------------------------------------------------- | 1 | novel | |||
| seed | -----------GCAGCCA--------------------------------------------------- | 1 | novel | |||
| seed | -------------------------AGGAUGC------------------------------------- | 1 | novel | |||
| seed | ---------------CCAGUGC----------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T3S2 | |||
| ---------------CCAGTGCAGCAGGATGCC------------------------------------ | 18 | 2 | - | - | - | |
| ----------------------AGCAGGATGCCGGAACCT----------------------------- | 18 | 2 | - | - | - | |
| ------------------------CAGGATGCCGGAACCTTC--------------------------- | 18 | - | - | - | 1 | |
| TTCGTCTGGGTGCAGCCAGTGCAG--------------------------------------------- | 24 | - | - | 1 | - | |
| -----------GCAGCCAGTGCAGCAGGA---------------------------------------- | 18 | - | - | - | 1 | |
| ---------------CCAGTGCAGCAGGATGCCG----------------------------------- | 19 | - | - | - | 1 | |
| ----------TGCAGCCAGTGCAGCAGGA---------------------------------------- | 19 | 1 | - | - | - | |
| -----------GCAGCCAGTGCAGCAGGATGCC------------------------------------ | 22 | - | 1 | - | - | |
| --------------GCCAGTGCAGCAGGATGC------------------------------------- | 18 | 1 | - | - | - | |
| rat | TTCGTCTGGGTGCAGCCAGTGCAGCAGGATGCCGGAACCTTCccgctccactcccgcgccgaagaaggg | |||||
| ********************************************************************* | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000033866 ENSRNOG00000022983 Trim17 | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048642 ENSRNOG00000022983 Trim17 | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000033894 ENSRNOG00000022983 Trim17 | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058453 ENSRNOG00000022983 Trim17 | |||||
| rat | .((.(((.(((((....((((.(((.(((...........))).))).))))...)))))..))).)). | 0.500 -21.60 | ||||
| rat | chromosome:10:45238125:45238193:1 | Same_strand|Intronic_coding|ENSRNOT00000058453|ENSRNOG00000022983 ## Same_strand|Boundary_non-coding|ENSRNOT00000003885|ENSRNOG00000022983 ## ENSRNOG00000022983|protein_coding|Trim17|Tripartite motif-containing protein 17 (Testis RING finger protein). [Source:UniProtKB/Swiss-Prot;Acc:Q9WV59] |
block426999 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.263 | no | no | 0.48/0.61 | 18/21/0.33 | 0.0 1.9 0.5 | 0.0 1.6 0.5 | 1 12 2 | 0 0 0 | 1 6 2 | 0 0 0 | 24 10 6 | -13 -3 8 | 5arm_loop_3arm 3arm 3arm | 1 2 2 | nd nd nd | 0.30 0.32 0.50 | 4 3 3 | 15 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------------------CGACAAC--------------------- | 4 | novel | ||||||
| seed | ------------------------------------UCAACGA------------------------- | 3 | novel | ||||||
| seed | ---------------------------------------ACGACAA---------------------- | 3 | novel | ||||||
| seed | --------------------------------------------AACAACA----------------- | 1 | novel | ||||||
| seed | -----------------------------------------GACAACA-------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------ACAACAG---------------- | 1 | novel | ||||||
| seed | -------------------------UCGGAUU------------------------------------ | 1 | novel | ||||||
| seed | ---------------------------------AUGUCAA---------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------ACGACAACAACAGGGGGAC---------- | 19 | - | - | 2 | - | 2 | - | - | |
| -----------------------------------GTCAACGACAACAACAGGGG------------- | 20 | - | 1 | - | - | - | - | 1 | |
| --------------------------------------AACGACAACAACAGGGGG------------ | 18 | - | - | 1 | - | - | - | - | |
| ----------------------------------------CGACAACAACAGGGGGAC---------- | 18 | - | - | - | 1 | - | - | - | |
| --------------------------------------AACGACAACAACAGGGGGAC---------- | 20 | - | - | 1 | - | - | - | - | |
| -----------------------------------GTCAACGACAACAACAGG--------------- | 18 | 1 | - | - | - | - | - | - | |
| --------------------------------------AACGACAACAACAGGGGGA----------- | 19 | - | - | - | 1 | - | - | - | |
| --------------------------------CATGTCAACGACAACAACAGG--------------- | 21 | - | - | - | - | - | - | 1 | |
| ------------------------GTCGGATTCATGTCAACGAC------------------------ | 20 | - | - | - | - | - | 1 | - | |
| --------------------------------------------AACAACAGGGGGACACAA------ | 18 | - | - | - | - | 1 | - | - | |
| -------------------------------------------CAACAACAGGGGGACACA------- | 18 | - | - | - | - | - | - | 1 | |
| rat | ccattgggctgtaatcagtgtcatGTCGGATTCATGTCAACGACAACAACAGGGGGACACAAaatggc | ||||||||
| ******************************************************************** | |||||||||
| rat | (((((....(((..((..(((..((((((((....)))..)))))...))).))..)))...))))). | 0.890 -14.40 | |||||||
| rat | chromosome:15:3012439:3012506:-1 | intergenic ## {SimpF: oe = 0.88 -1 CpG} |
block1766996 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.639 | no | no | 0.28/0.43 | 19/25/0.58 | 0.4 0.0 3.0 | 1.2 0.0 1.5 | 5 3 4 | 0 0 0 | 1 1 3 | 0 0 0 | 13 26 38 | 11 -2 -16 | 5arm 5arm_loop 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.29 0.36 0.42 | 5 3 5 | 12 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------GUCAUCU-------------------------------------------------------------------------------------- | 3 | novel | ||
| seed | ---------------------------ACUUAGA------------------------------------------------------------------------- | 3 | novel | ||
| seed | ---------------UCAUCUA------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------------------------GCAUUCU---------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------GCAGCAU------------------------------------------------------------- | 1 | miR-103/107 | ||
| seed | ----------------------------------------CAGCAUU------------------------------------------------------------ | 1 | novel | ||
| seed | -----------------------------------------------CUUUAUC----------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S2 | T5S1 | |||
| --------------------------TACTTAGATTTATGCAGCATTCTTT-------------------------------------------------------- | 25 | - | - | 3 | |
| -------------TGTCATCTATGTCTACTTAG-------------------------------------------------------------------------- | 20 | - | - | 2 | |
| --------------GTCATCTATGTCTACTTAGATTTA--------------------------------------------------------------------- | 24 | - | - | 1 | |
| ----------------------------------------------TCTTTATCAGAGGACTACA------------------------------------------ | 19 | 1 | - | - | |
| --------------------------------------TGCAGCATTCTTTATCAGAGGACT--------------------------------------------- | 24 | - | - | 1 | |
| --------------GTCATCTATGTCTACTTAG-------------------------------------------------------------------------- | 19 | - | - | 1 | |
| -------------TGTCATCTATGTCTACTTAGA------------------------------------------------------------------------- | 21 | - | - | 1 | |
| ---------------------------------------GCAGCATTCTTTATCAGAGGACT--------------------------------------------- | 23 | - | 1 | - | |
| -----------------------------------------AGCATTCTTTATCAGAGGACTACA------------------------------------------ | 24 | - | - | 1 | |
| rat | tcagcattgattcTGTCATCTATGTCTACTTAGATTTATGCAGCATTCTTTATCAGAGGACTACAtcgtgtgagttagatatttttatatagactataaaggttaga | ||||
| *********************************************************************************************************** | |||||
| rat | ...........(((((.....(((((((((((.((..(((.((..((((.....))))..)).))).)).))))).))))))......))))).............. | 0.700 -16.70 | |||
| rat | chromosome:5:114555259:114555365:-1 | intergenic |
block2156605 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.810 | no | no | 0.55/0.74 | 18/22/0.08 | 0.0 1.2 2.3 | 0.0 1.0 2.3 | 1 4 19 | 0 0 0 | 1 4 7 | 0 0 0 | 46 49 17 | -11 -18 -2 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 | 16 20 27 | 0.50 0.42 0.26 | 6 6 4 | 24 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ----------------------------------------------------------GGUGCAG------------------------------------ | 9 | novel | ||||||||
| seed | ------------------------------------------------------------------UCGUUGG---------------------------- | 2 | novel | ||||||||
| seed | ---------------------------------------------------------------AGGUCGU------------------------------- | 2 | novel | ||||||||
| seed | -----------------------------------------------------------GUGCAGG----------------------------------- | 2 | novel | ||||||||
| seed | ----------------------------------------------------CGGGAAG------------------------------------------ | 2 | novel | ||||||||
| seed | ---------------------------------------------------GCGGGAA------------------------------------------- | 1 | novel | ||||||||
| seed | -----------------------------------------------GGGCGCG----------------------------------------------- | 1 | novel | ||||||||
| seed | ------------------------------------------------------------UGCAGGU---------------------------------- | 1 | novel | ||||||||
| seed | --------------------------------------------------------------CAGGUCG-------------------------------- | 1 | novel | ||||||||
| seed | -------------------------------------------------------------GCAGGUC--------------------------------- | 1 | novel | ||||||||
| seed | --------------------------------------------------CGCGGGA-------------------------------------------- | 1 | novel | ||||||||
| seed | ----------------------------------------------------------------GGUCGUU------------------------------ | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| ---------------------------------------------------------AGGTGCAGGTCGTTGGGAT------------------------- | 19 | - | - | - | - | 3 | 2 | - | - | - | |
| ---------------------------------------------------------AGGTGCAGGTCGTTGGGA-------------------------- | 18 | - | - | - | - | 1 | - | - | 2 | - | |
| --------------------------------------------------------------CAGGTCGTTGGGATTGAGC-------------------- | 19 | - | - | - | - | - | - | - | - | 2 | |
| ----------------------------------------------------------GGTGCAGGTCGTTGGGAT------------------------- | 18 | 2 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------GTCGTTGGGATTGAGCGTC----------------- | 19 | - | - | - | - | - | - | - | - | 2 | |
| ---------------------------------------------------------------AGGTCGTTGGGATTGAGC-------------------- | 18 | - | - | 1 | - | - | - | - | - | - | |
| ------------------------------------------------------------TGCAGGTCGTTGGGATTG----------------------- | 18 | - | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------GCAGGTCGTTGGGATTGA---------------------- | 18 | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------GCGGGAAGGTGCAGGTCGTT------------------------------ | 20 | - | - | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------GCGGGAAGGTGCAGGTCG-------------------------------- | 18 | - | - | - | - | - | 1 | - | - | - | |
| ----------------------------------------------AGGGCGCGGGAAGGTGCA------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | - | |
| -------------------------------------------------GCGCGGGAAGGTGCAGGTC--------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | |
| ---------------------------------------------------------AGGTGCAGGTCGTTGGGATTGA---------------------- | 22 | - | - | - | - | - | 1 | - | - | - | |
| --------------------------------------------------CGCGGGAAGGTGCAGGTC--------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------GTGCAGGTCGTTGGGATTG----------------------- | 19 | - | - | - | 1 | - | - | - | - | - | |
| rat | ggttgctgagggtgaaacttttcattgactttgctcacttcgggccAGGGCGCGGGAAGGTGCAGGTCGTTGGGATTGAGCGTCgtgggaaccgagaggcc | ||||||||||
| ***************************************************************************************************** | |||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000056077 ENSRNOG00000024177 Tob2 | ||||||||||
| rat | (((..((..((.......((..((.((((...(((((.(((.((((...((((......)))).))))....))).)))))))))))..)))).))..))) | 0.450 -28.71 | |||||||||
| rat | chromosome:7:120209656:120209756:-1 | Same_strand|Boundary_coding|ENSRNOT00000056077|ENSRNOG00000024177 ## Same_strand|Boundary_non-coding|ENSRNOT00000026582|ENSRNOG00000024177 ## ENSRNOG00000024177|protein_coding|Tob2|transducer of ERBB2, 2 [Source:RefSeq_peptide;Acc:NP_001007147] |
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