other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH (9 loci)
sblock2492 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.213 | no | no | 0.29/0.50 | 18/25/0.06 | 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.2 0.0 0.7 | 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.5 0.0 0.0 | 1 2 1 1 1 1 1 6 1 3 | 0 0 0 0 0 0 0 0 0 0 | 1 1 1 1 1 1 1 2 1 2 | 0 0 0 0 0 0 0 0 0 0 | 13 17 26 29 34 43 34 21 18 14 | 21 16 8 4 0 -10 -7 7 15 19 | 5arm 5arm 5arm 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm 3arm | 3 3 3 3 3 3 3 3 3 3 | nd nd nd nd nd nd nd nd nd nd | 0.44 0.47 0.56 0.53 0.56 0.63 0.68 0.58 0.42 0.37 | 3 3 7 7 6 7 9 7 3 3 | 18 | 5 | -10 | -10 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------------------CUCUUUA------------------------------------ | 2 | novel | ||||
| seed | --------------------------------------------------------------------------------UCUACUU------------------------ | 2 | novel | ||||
| seed | ------------------UUGUCUG-------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | -------------------------------------------------------------------UCUCUUU------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------------------------------------------ACUUCUC----------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------------------------UUUAACU--------------------------------- | 1 | novel | ||||
| seed | ------------------------------UAGACCU-------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------------------------------------------------CUCUACU------------------------- | 1 | novel | ||||
| seed | --------------CUGCUUG------------------------------------------------------------------------------------------ | 1 | novel | ||||
| seed | ---------------------------GAAUAGA----------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------------CUUUAAC---------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------UGAUUUA------------------------------------------------------------ | 1 | novel | ||||
| seed | -----------------------------------CUUCUUG--------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------UCUCUUG--------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T3S1 | T4S1 | T4S2 | |||
| -----------------CTTGTCTGAAGAATAGACC--------------------------------------------------------------------------- | 19 | - | 2 | - | - | - | |
| -------------------------------------------------------------------TCTCTTTAACTTCTCTAC-------------------------- | 18 | - | - | 2 | - | - | |
| -------------------------------------------------------------------------------CTCTACTTCAAGCAGCTC-------------- | 18 | - | 1 | 1 | - | - | |
| ------------------------------------------------------------------CTCTCTTTAACTTCTCTAC-------------------------- | 19 | 1 | - | 1 | - | - | |
| ------------------------------------------------------------------------------TCTCTACTTCAAGCAGCTC-------------- | 19 | - | - | 1 | - | - | |
| ----------------------------------CCTTCTTGAGTGATTTAC----------------------------------------------------------- | 18 | - | - | 1 | - | - | |
| --------------------------------------------------------------------------AACTTCTCTACTTCAAGCA------------------ | 19 | 1 | - | - | - | - | |
| ----------------------------------------------------TTCTCTTGTCTTTGCTCTCTTTAAC---------------------------------- | 25 | - | - | 1 | - | - | |
| ----------------------------------------------------------------------CTTTAACTTCTCTACTTCA---------------------- | 19 | - | - | 1 | - | - | |
| -----------------------------ATAGACCTTCTTGAGTGAT--------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -------------ACTGCTTGTCTGAAGAAT-------------------------------------------------------------------------------- | 18 | - | - | 1 | - | - | |
| --------------------------AGAATAGACCTTCTTGAG------------------------------------------------------------------- | 18 | - | 1 | - | - | - | |
| ---------------------------------------------------------------------TCTTTAACTTCTCTACTTCAA--------------------- | 21 | - | - | 1 | - | - | |
| -------------------------------------------GTGATTTACTTCTCTTGTC------------------------------------------------- | 19 | - | - | - | 1 | - | |
| rat | tcgggggacttacACTGCTTGTCTGAAGAATAGACCTTCTTGAGTGATTTACTTCTCTTGTCTTTGCTCTCTTTAACTTCTCTACTTCAAGCAGCTCtgctacacctgtga | ||||||
| *************************************************************************************************************** | |||||||
| >>>>>>................................................................................................................... | ENSRNOT00000053329 ENSRNOG00000035206 U2 | ||||||
| rat | (((.(((.....((..((.((..(((((...(((.......((((((...((.......))..)))))).........)))...)))))..))))..)).....))).))) | 0.750 -21.39 | |||||
| rat | chromosome:10:90683375:90683485:-1 | intergenic |
sblock2824 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.328 | no | no | 0.29/0.50 | 18/21/0.11 | 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.2 0.0 0.7 | 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.5 0.0 0.0 | 1 2 1 1 1 1 1 6 1 3 | 0 0 0 0 0 0 0 0 0 0 | 1 1 1 1 1 1 1 2 1 2 | 0 0 0 0 0 0 0 0 0 0 | 13 17 26 29 34 43 40 21 18 14 | 21 16 8 4 0 -10 -5 10 18 22 | 5arm 5arm 5arm 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm 3arm | 3 3 3 3 3 3 3 3 3 3 | nd nd nd nd nd nd nd nd nd nd | 0.44 0.47 0.56 0.53 0.56 0.63 0.60 0.58 0.42 0.37 | 3 3 7 7 6 7 5 7 3 3 | 18 | 6 | -10 | -10 |
| reads | miRBase family seed | |||||||
| seed | ----------------------------------------------------------------------UCUCUUU------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------------------------------------CUCUUUA------------------------------------ | 2 | novel | |||||
| seed | -----------------------------------------------------------------------------------UCUACUU------------------------ | 2 | novel | |||||
| seed | ------------------UUGUCUG----------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ----------------------------------------------------------------------------------CUCUACU------------------------- | 1 | novel | |||||
| seed | --------------------------------------------UGAUUUA--------------------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------UCUUGUC---------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------------CUUUAAC---------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------------------------UUUAACU--------------------------------- | 1 | novel | |||||
| seed | --------------CUGCUUG--------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------GAAUAGA-------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------CUUCUUG------------------------------------------------------------------------ | 1 | novel | |||||
| seed | ------------------------------UAGACCU----------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------------------------------ACUUCUC----------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | |||
| -----------------CTTGTCTGAAGAATAGACC------------------------------------------------------------------------------ | 19 | - | 2 | - | - | - | - | |
| ----------------------------------------------------------------------TCTCTTTAACTTCTCTAC-------------------------- | 18 | - | - | - | 2 | - | - | |
| ---------------------------------------------------------------------CTCTCTTTAACTTCTCTAC-------------------------- | 19 | 1 | - | - | 1 | - | - | |
| ----------------------------------------------------------------------------------CTCTACTTCAAGCAGCTC-------------- | 18 | - | 1 | - | 1 | - | - | |
| -------------ACTGCTTGTCTGAAGAAT----------------------------------------------------------------------------------- | 18 | - | - | - | 1 | - | - | |
| ------------------------------------------------------CTCTTGTCGTCTTTGCTCTC---------------------------------------- | 20 | - | - | 1 | - | - | - | |
| -----------------------------------------------------------------------------AACTTCTCTACTTCAAGCA------------------ | 19 | 1 | - | - | - | - | - | |
| -------------------------------------------GTGATTTACTTCTCTTGTC---------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| --------------------------AGAATAGACCTTCTTGAG---------------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------TCTTTAACTTCTCTACTTCAA--------------------- | 21 | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------------------------TCTCTACTTCAAGCAGCTC-------------- | 19 | - | - | - | 1 | - | - | |
| -------------------------------------------------------------------------CTTTAACTTCTCTACTTCA---------------------- | 19 | - | - | - | 1 | - | - | |
| -----------------------------ATAGACCTTCTTGAGTGAT------------------------------------------------------------------ | 19 | - | - | - | - | - | 1 | |
| ----------------------------------CCTTCTTGAGTGATTTAC-------------------------------------------------------------- | 18 | - | - | - | 1 | - | - | |
| rat | tcgggggacttacACTGCTTGTCTGAAGAATAGACCTTCTTGAGTGATTTACTTCTCTTGTCGTCTTTGCTCTCTTTAACTTCTCTACTTCAAGCAGCTCtgctacacctgtga | |||||||
| ****************************************************************************************************************** | ||||||||
| >>>>>>...................................................................................................................... | ENSRNOT00000052721 ENSRNOG00000034598 U2 | |||||||
| rat | (((.(((.....((..((.((..(((((...(((.......((((((...((.......)).....)))))).........)))...)))))..))))..)).....))).))) | 0.710 -20.39 | ||||||
| rat | chromosome:10:90677298:90677411:1 | intergenic |
sblock8014 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.728 | no | no | 0.11/0.43 | 18/25/0.22 | 0.0 0.0 1.8 | 0.0 0.0 1.8 | 3 1 19 | 0 0 0 | 2 1 4 | 0 0 0 | 37 34 23 | -2 -4 2 | 5arm_loop 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.48 0.37 0.32 | 4 3 2 | 37 | 4 | 8 | 10 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------CUUAAGU---------------------------------- | 11 | novel | |||
| seed | ----------------------------------------------------------------GGUCUCU--------------------------------------- | 8 | novel | |||
| seed | -------------------------------------------------------------------CUCUUAA------------------------------------ | 5 | novel | |||
| seed | ------------------------------------------------------------------------AAGUAAA------------------------------- | 5 | novel | |||
| seed | --------------------------------------ACGUCGA----------------------------------------------------------------- | 3 | novel | |||
| seed | ---------------------------------------------------------------UGGUCUC---------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------GUCUCUU-------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------UACACUG--------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------UAAGUAA-------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T4S1 | T5S1 | |||
| --------------------------------------------------------------------TCTTAAGTAAACTATTTAT----------------------- | 19 | - | - | 1 | 9 | |
| ---------------------------------------------------------------TGGTCTCTTAAGTAAACTA---------------------------- | 19 | - | 1 | - | 5 | |
| ------------------------------------------------------------------TCTCTTAAGTAAACTATTT------------------------- | 19 | - | - | - | 5 | |
| -------------------------------------TACGTCGAAGGAATCAAGTCT---------------------------------------------------- | 21 | 1 | - | - | 2 | |
| --------------------------------------------------------------CTGGTCTCTTAAGTAAACT----------------------------- | 19 | - | - | - | 2 | |
| ----------------------------------------------------------------------TTAAGTAAACTATTTATATG-------------------- | 20 | - | - | - | 1 | |
| ---------------------------------------------------------TTACACTGGTCTCTTAAGT---------------------------------- | 19 | - | 1 | - | - | |
| -----------------------------------------------------------------------TAAGTAAACTATTTATATGGG------------------ | 21 | - | - | - | 1 | |
| -----------------------------------------------------------------------TAAGTAAACTATTTATAT--------------------- | 18 | - | - | - | 1 | |
| -----------------------------------------------------------------------TAAGTAAACTATTTATATGG------------------- | 20 | - | - | - | 1 | |
| --------------------------------------------------------------------TCTTAAGTAAACTATTTA------------------------ | 18 | - | - | - | 1 | |
| -----------------------------------------------------------------------TAAGTAAACTATTTATATGGGTC---------------- | 23 | 1 | - | - | - | |
| ----------------------------------------------------------------GGTCTCTTAAGTAAACTAT--------------------------- | 19 | - | - | - | 1 | |
| -----------------------------------------------------------------------TAAGTAAACTATTTATATG-------------------- | 19 | - | - | - | 1 | |
| ---------------------------------------------------------------TGGTCTCTTAAGTAAACTATTTATA---------------------- | 25 | - | - | - | 1 | |
| ---------------------------------------------------------------TGGTCTCTTAAGTAAACTATTT------------------------- | 22 | - | - | - | 1 | |
| rat | ccatgacacatagggtctcttccagttctaagtagcatacgtcgaaggaatcaagtcttacacTGGTCTCTTAAGTAAACTATTTATatgggtccgtctttagaaacagg | |||||
| ************************************************************************************************************** | ||||||
| rat | ((.((.....(((((.....((((....(((((((..(((....(((..(((.(((.....))))))..)))..)))..)))))))..)))).....)))))....)))) | 0.420 -19.30 | ||||
| rat | chromosome:3:76956170:76956279:1 | intergenic |
sblock8958 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.491 | no | no | 0.50/0.58 | 18/23/0.27 | 0.0 2.1 | 0.5 2.2 | 2 9 | 0 0 | 2 4 | 0 0 | 38 17 | -3 15 | 5arm_loop 3arm | 3 3 | nd nd | 0.33 0.39 | 3 5 | 11 | 5 | 0 | -17 |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------------------------------------------CAAGAUG-------------------------------- | 4 | novel | ||||
| seed | ----------------------------------------------------------------------------CAGCAAG----------------------------------- | 3 | novel | ||||
| seed | --------------------------------------------------------------------------GGCAGCA------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------AGCUCAG------------------------------------------------------------------------ | 2 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T3S1 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------------GCAAGATGTGGATCACTGC--------------------- | 19 | - | 3 | - | - | - | |
| -------------------------------------------------------------------------TGGCAGCAAGATGTGGAT--------------------------- | 18 | - | - | - | 1 | 1 | |
| ---------------------------------------------------------------------------GCAGCAAGATGTGGATCAC------------------------ | 19 | - | - | 1 | - | - | |
| --------------------------------------GAGCTCAGAGGGAAAGGAC------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| --------------------------------------GAGCTCAGAGGGAAAGGA-------------------------------------------------------------- | 18 | 1 | - | - | - | - | |
| ------------------------------------------------------------------------------GCAAGATGTGGATCACTGCTCTG----------------- | 23 | - | - | 1 | - | - | |
| ---------------------------------------------------------------------------GCAGCAAGATGTGGATCACTGC--------------------- | 22 | - | 1 | - | - | - | |
| ---------------------------------------------------------------------------GCAGCAAGATGTGGATCACTG---------------------- | 21 | - | 1 | - | - | - | |
| rat | ggataaactagaggggcggagcctcgaccataaaagccGAGCTCAGAGGGAAAGGACgctgtcttccgggcctTGGCAGCAAGATGTGGATCACTGCTCTGctgctgctcgtgctgct | ||||||
| ********************************************************************************************************************** | |||||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000057989 ENSRNOG00000038102 Rbed1 | ||||||
| ........................................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000019571 ENSRNOG00000014090 Retsat | ||||||
| rat | ((....((.((((.((((((((...(((((((...(((((((((.(((((..((....)).))))).)))).))))).......))))).))...)))))))).)).)).))....)) | 0.700 -39.60 | |||||
| rat | chromosome:4:106100020:106100137:1 | Same_strand|Boundary_non-coding|ENSRNOT00000019571|ENSRNOG00000014090 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000057989|ENSRNOG00000038102 ## ENSRNOG00000014090|protein_coding|Retsat|All-trans-retinol 13,14-reductase precursor (EC 1.3.99.23) (All-trans- 13,14-dihydroretinol saturase) (RetSat) (RMT-7). [Source:UniProtKB/Swiss-Prot;Acc:Q8VHE9] ## ENSRNOG00000038102|protein_coding|Rbed1|ELMO domain-containing protein 3 (RNA-binding motif and ELMO domain- containing protein 1). [Source:UniProtKB/Swiss-Prot;Acc:Q5XIQ2] ## {Repeats: dust 106100133 106100141 0 class=dust,trf 25 32 0 class=trf} |
novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK (9 loci)
sblock11830 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.40/0.56 | 18/21/0.60 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 2 4 | 0 0 0 | 1 1 3 | 0 0 0 | 8 24 22 | 20 7 -1 | 5arm 5arm 3arm_loop | 1 1 1 | nd nd nd | 0.38 0.39 0.10 | 4 4 2 | 10 | 3 | -8 | 0 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------GGCUUUG----------------------------------- | 6 | novel | ||
| seed | -------------------------GGAGGAA---------------------------------------------------------------- | 2 | novel | ||
| seed | ---------AGAAACU-------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------AUGGCUU------------------------------------- | 1 | miR-135a/135b | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| -----------------------------------------------------TGGCTTTGTTTTTCTCCCTCT---------------------- | 21 | 4 | - | - | |
| ------------------------AGGAGGAAGGACCAGGAA------------------------------------------------------ | 18 | - | - | 2 | |
| -----------------------------------------------------TGGCTTTGTTTTTCTCCCT------------------------ | 19 | - | 1 | 1 | |
| ---------------------------------------------------TATGGCTTTGTTTTTCTCCC------------------------- | 20 | - | - | 1 | |
| --------TAGAAACTGTCACTCCAGGAG------------------------------------------------------------------- | 21 | - | - | 1 | |
| rat | ctgggtgctagaaactgtcactccAGGAGGAAGGACCAGGAAcaaggtcaataTGGCTTTGTTTTTCTCCCTCTggctgtgtctcagtcaccagga | ||||
| ************************************************************************************************ | |||||
| rat | ((.((((......((((.(((.((((..((.((((....((((((((((.....))))))))))))))))..))))..)))...)))))))).)). | 0.990 -34.20 | |||
| rat | chromosome:8:72082008:72082103:-1 | intergenic |
sblock3367 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.25/0.58 | 19/23/0.33 | 0.0 0.0 0.6 0.0 1.0 | 0.0 0.0 0.4 0.0 0.5 | 1 4 10 7 2 | 0 0 0 0 0 | 1 2 4 2 1 | 0 0 0 0 0 | 7 26 19 12 3 | 15 -4 -2 8 15 | 5arm 5arm_loop 3arm_loop 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.32 0.37 0.20 0.42 0.40 | 3 5 2 2 2 | 33 | 5 | 12 | 12 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------GUGUCUU------------------------------ | 8 | novel | ||||
| seed | ---------------------------------------------------------------AAUGUAU----------------------- | 7 | novel | ||||
| seed | ------------------------------------------------------------CUUAAUG-------------------------- | 5 | novel | ||||
| seed | ---------------------------ACCCUAG----------------------------------------------------------- | 4 | novel | ||||
| seed | -----------------------------------------------------CCUGUGU--------------------------------- | 2 | novel | ||||
| seed | ----------------------------------------------CCCUUUU---------------------------------------- | 2 | novel | ||||
| seed | --------UCAAGGC------------------------------------------------------------------------------ | 1 | novel | ||||
| seed | ----------------------------------------------------------------------CUAAUAC---------------- | 1 | novel | ||||
| seed | ----------------------------------------------------UCCUGUG---------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------------------------AAUACAG-------------- | 1 | novel | ||||
| seed | --------------------------------------------------UUUCCUG------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T5S1 | |||
| -------------------------------------------------------TGTGTCTTAATGTATCTAA------------------- | 19 | - | - | 2 | - | 6 | |
| --------------------------------------------------------------TAATGTATCTAATACAGCA------------ | 19 | - | - | - | - | 7 | |
| --------------------------TACCCTAGGACGCAGCTCA------------------------------------------------ | 19 | - | 1 | - | - | 3 | |
| -----------------------------------------------------------TCTTAATGTATCTAATACAG-------------- | 20 | - | 1 | - | - | 2 | |
| -----------------------------------------------------------TCTTAATGTATCTAATACAGCA------------ | 22 | - | - | - | - | 2 | |
| ---------------------------------------------TCCCTTTTCCTGTGTCTTAATGT------------------------- | 23 | 1 | - | - | - | 1 | |
| ----------------------------------------------------TCCTGTGTCTTAATGTATCT--------------------- | 20 | - | - | - | - | 2 | |
| -----------------------------------------------------------------------TAATACAGCATCCTGACAA--- | 19 | - | - | - | - | 1 | |
| -------------------------------------------------TTTTCCTGTGTCTTAATGT------------------------- | 19 | - | - | - | 1 | - | |
| ---------------------------------------------------------------------TCTAATACAGCATCCTGACA---- | 20 | - | - | - | - | 1 | |
| ---------------------------------------------------TTCCTGTGTCTTAATGTATCT--------------------- | 21 | - | - | - | - | 1 | |
| -------TTCAAGGCCAGTCCTAAGA------------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| rat | ggatatcttcaaggccagtcctaagaTACCCTAGGACGCAGCTCAtcccttttccTGTGTCTTAATGTATCTAATACAGCAtcctgacaatcc | ||||||
| ********************************************************************************************* | |||||||
| rat | ((((....((.(((...((..((((((((..((((((((((.............))))))))))..))))))..))..))..)))))..)))) | 0.450 -22.02 | |||||
| rat | chromosome:12:5598818:5598910:1 | intergenic |
sblock6235 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.57/0.79 | 18/22/0.33 | 0.6 0.7 0.0 | 0.9 0.0 0.0 | 7 3 2 | 0 0 0 | 3 2 1 | 0 0 0 | 28 55 20 | 8 -18 12 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.17 0.52 0.20 | 1 8 1 | 12 | 5 | 5 | 3 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------CGGUGCA---------------------------------------------------------------------------------- | 5 | novel | ||||
| seed | ----------------------------------------------------------UCACUGC----------------------------------------------------- | 2 | novel | ||||
| seed | -------------------------------------------------------------------------------GUGCCCU-------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------UCUCACU------------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------UGCAGCG------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------GGUGCAG--------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T2S1 | T3S1 | T3S2 | T4S2 | T5S2 | |||
| ----------------------------GCGGTGCAGCGGGCAGAGC----------------------------------------------------------------------- | 19 | 1 | 3 | - | - | - | |
| ---------------------------------------------------------CTCACTGCTGGGCATTCCT------------------------------------------ | 19 | - | - | 2 | - | - | |
| ------------------------------------------------------------------------------TGTGCCCTCTGTCGCCCAGT-------------------- | 20 | - | - | 2 | - | - | |
| ----------------------------GCGGTGCAGCGGGCAGAGCTCC-------------------------------------------------------------------- | 22 | 1 | - | - | - | - | |
| -------------------------------------------------------CTCTCACTGCTGGGCATTCCT------------------------------------------ | 21 | - | - | - | 1 | - | |
| -------------------------------GTGCAGCGGGCAGAGCTCC-------------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -----------------------------CGGTGCAGCGGGCAGAGC----------------------------------------------------------------------- | 18 | - | 1 | - | - | - | |
| rat | cttcctgcagagtaggttttaggcctctGCGGTGCAGCGGGCAGAGCTCCggttgCTCTCACTGCTGGGCATTCCTgcTGTGCCCTCTGTCGCCCAGTcctcccatctttcctagaag | ||||||
| ********************************************************************************************************************** | |||||||
| rat | ((((.....(((.((((...(((...(((.(((((((.(((((.(((...((.(((((........)))))..)).))).))))).))).))))))).)))...)))))))...)))) | 0.520 -45.10 | |||||
| rat | chromosome:2:236072354:236072471:-1 | intergenic |
sblock6722 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.42/0.62 | 19/25/0.30 | 0.6 0.0 0.0 0.0 | 2.1 0.0 0.0 0.0 | 7 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 14 24 25 11 | -2 -11 2 11 | 5arm_loop 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.11 0.42 0.37 0.42 | 1 4 3 6 | 10 | 2 | 2 | -5 |
| reads | miRBase family seed | |||
| seed | ----------------GCAAGAG---------------------------------------------------------------- | 4 | novel | |
| seed | ---------------UGCAAGA----------------------------------------------------------------- | 3 | novel | |
| seed | -------------------------GUUGUCU------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------CAGUCAG------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------------CACAGCU--------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------TGCAAGAGCTGTTGTCTCC----------------------------------------------------- | 19 | - | 3 | |
| --------------TTGCAAGAGCTGTTGTCTCCTCCCA------------------------------------------------ | 25 | - | 3 | |
| ------------------------TGTTGTCTCCTCCCAGGGGCCAGT--------------------------------------- | 24 | - | 1 | |
| -------------------------------------------CCAGTCAGATCACAGCTGA------------------------- | 19 | 1 | - | |
| ----------------------------------------------------TCACAGCTGATCTTGTATCTTCTG----------- | 24 | - | 1 | |
| ---------------TGCAAGAGCTGTTGTCTCCTCCCA------------------------------------------------ | 24 | - | 1 | |
| rat | tgctggctttggctTTGCAAGAGCTGTTGTCTCCTCCCAGGGGCCAGTCAGATCACAGCTGATCTTGTATCTTCTGgcctggctagt | |||
| *************************************************************************************** | ||||
| rat | .(((((((..((((.((((((((((((.((((.((((....))..))..)))).)))))...)))))))......)))).))))))) | 0.990 -33.00 | ||
| rat | chromosome:20:5513824:5513910:-1 | intergenic |
sblock6846 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.42/0.63 | 18/23/0.21 | 1.0 0.0 0.0 0.0 | 0.8 0.5 0.0 0.0 | 4 2 1 15 | 0 0 0 0 | 2 2 1 2 | 0 0 0 0 | 10 18 51 38 | 21 15 -18 -2 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.15 0.11 0.63 0.26 | 1 1 10 4 | 24 | 5 | -13 | -13 |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------------------------GUCCAGG------------------------------------------------- | 15 | novel | ||||
| seed | ------------GGGCCAU-------------------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | -------------------GAAUGGU------------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | -----------UGGGCCA--------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------GACAAUC---------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------------------------------------GAAGGAC------------------------------------------- | 1 | novel | ||||
| seed | -------------GGCCAUG------------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------CAGGAAG---------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T4S2 | T5S1 | |||
| ------------------------------------------------------------TGTCCAGGAAGGACTTTGT-------------------------------------- | 19 | - | - | - | - | 15 | |
| -----------TGGGCCATGAATGGTGGGGT-------------------------------------------------------------------------------------- | 20 | 1 | - | - | - | 1 | |
| ------------------TGAATGGTGGGGTACGAGG-------------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | |
| ---------------------------------------------------AGACAATCATGTCCAGGAA----------------------------------------------- | 19 | - | - | 1 | - | - | |
| ------------------TGAATGGTGGGGTACGAG--------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | |
| ----------ATGGGCCATGAATGGTGGGG--------------------------------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| ------------GGGCCATGAATGGTGGGGT-------------------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| ------------------------------------------------------------------GGAAGGACTTTGTACCCACA------------------------------- | 20 | - | - | - | - | 1 | |
| ---------------------------------------------------------------CCAGGAAGGACTTTGTACCCACA------------------------------- | 23 | - | - | - | 1 | - | |
| rat | gtctgggctaatgggccatgaatggtggggtacgagggacagggatcctggagacaatcaTGTCCAGGAAGGACTTTGTacccacatgagccaatcaggtctctctgcacacacaga | ||||||
| ********************************************************************************************************************* | |||||||
| rat | .((((.((....(((((.(((.((((.((((((((((........(((((((..........)))))))....))))))))))......)))).))))))))....)).....)))) | 0.940 -43.50 | |||||
| rat | chromosome:20:13194206:13194322:-1 | intergenic |
sblock7120 [novel_lenNOK_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.45/0.58 | 18/24/0.28 | 0.7 0.4 0.0 | 1.3 0.4 1.7 | 3 23 3 | 0 0 0 | 2 4 2 | 0 0 0 | 26 23 1 | 0 -18 13 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.44 0.37 0.16 | 6 3 2 | 47 | 5 | 0 | 24 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------CCUGCUA---------------------------------- | 25 | novel | ||||
| seed | ----------------------------------------------UCCUGCU----------------------------------- | 12 | novel | ||||
| seed | ----------------------------------------------------------------AAUCCCA----------------- | 3 | novel | ||||
| seed | ---------------------------AUGAACU------------------------------------------------------ | 2 | novel | ||||
| seed | --------------------------------------------GUUCCUG------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------GCUAGGU------------------------------- | 1 | novel | ||||
| seed | -----------------------------GAACUCA---------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------CUGCUAG--------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T4S2 | T5S1 | |||
| ----------------------------------------------TCCTGCTAGGTTGACCTTA----------------------- | 19 | 1 | 2 | - | 1 | 14 | |
| ---------------------------------------------TTCCTGCTAGGTTGACCTT------------------------ | 19 | - | 1 | - | - | 9 | |
| ----------------------------------------------TCCTGCTAGGTTGACCTTAA---------------------- | 20 | - | - | - | - | 4 | |
| ----------------------------------------------TCCTGCTAGGTTGACCTTAATCCC------------------ | 24 | - | - | - | - | 3 | |
| ---------------------------------------------TTCCTGCTAGGTTGACCTTAATCC------------------- | 24 | - | - | - | - | 2 | |
| ---------------------------------------------------------------TAATCCCACACAGGCTCGG------ | 19 | - | - | 1 | - | 1 | |
| --------------------------TATGAACTCAGGCCACCTGT------------------------------------------ | 20 | 1 | - | - | - | - | |
| -------------------------------------------------TGCTAGGTTGACCTTAATCCCACA--------------- | 24 | - | - | - | - | 1 | |
| ----------------------------TGAACTCAGGCCACCTGT------------------------------------------ | 18 | - | - | - | - | 1 | |
| -----------------------------------------------CCTGCTAGGTTGACCTTAA---------------------- | 19 | - | - | - | - | 1 | |
| ---------------------------------------------------------------TAATCCCACACAGGCTCGGCCTCT- | 24 | - | - | - | - | 1 | |
| --------------------------TATGAACTCAGGCCACCT-------------------------------------------- | 18 | - | - | - | - | 1 | |
| -------------------------------------------TGTTCCTGCTAGGTTGACCT------------------------- | 20 | - | - | - | - | 1 | |
| -------------------------------------------TGTTCCTGCTAGGTTGAC--------------------------- | 18 | - | - | - | - | 1 | |
| rat | agagggaggacctgtttgtggggttttatgaactcaggccacctgTTCCTGCTAGGTTGACCTTAatcccacacaggctcggcctctg | ||||||
| **************************************************************************************** | |||||||
| rat | (((((..((.(((((..((((((((..........(((.(((((((....)).))).)).))).))))))))))))).))..))))). | 0.490 -32.20 | |||||
| rat | chromosome:20:5535874:5535961:1 | intergenic |
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