other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_mirtron (9 loci)
sblock3819 [novel_lenNOK_cloningOK_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.426 | no | no | 0.50/0.61 | 18/25/0.69 | 0.3 1.0 | 1.7 0.3 | 10 3 | 0 0 | 5 2 | 0 0 | 28 23 | 5 10 | 5arm 3arm | 1 1 | 10 2 | 0.16 0.27 | 1 2 | 13 | 6 | 7 | -2 |
| reads | miRBase family seed | |||||||
| seed | -------------------------------GGAGCUG-------------------------------------------------------------------------------- | 8 | novel | |||||
| seed | -----------------------------------------------------------------------------UCACAAC---------------------------------- | 2 | novel | |||||
| seed | --------------------------------------------------------------------------UGCUCAC------------------------------------- | 1 | novel | |||||
| seed | ------------------------------UGGAGCU--------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------CUGGAGC---------------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T4S2 | |||
| ------------------------------TGGAGCTGGGTCGTTGGACATGAC---------------------------------------------------------------- | 24 | 1 | - | - | - | 2 | - | |
| ------------------------------TGGAGCTGGGTCGTTGGACAT------------------------------------------------------------------- | 21 | 2 | - | - | - | - | - | |
| ----------------------------------------------------------------------------CTCACAACCCTGTTTCCA------------------------ | 18 | 2 | - | - | - | - | - | |
| ----------------------------GCTGGAGCTGGGTCGTTGGACAT------------------------------------------------------------------- | 23 | - | - | - | 1 | - | - | |
| ------------------------------TGGAGCTGGGTCGTTGGA---------------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | |
| ------------------------------TGGAGCTGGGTCGTTGGACATG------------------------------------------------------------------ | 22 | - | - | 1 | - | - | - | |
| -----------------------------CTGGAGCTGGGTCGTTGGACATGAC---------------------------------------------------------------- | 25 | - | - | 1 | - | - | - | |
| -------------------------------------------------------------------------ATGCTCACAACCCTGTTTCCAC----------------------- | 22 | - | 1 | - | - | - | - | |
| ------------------------------TGGAGCTGGGTCGTTGGACA-------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | |
| rat | acgctggaatctctcacaggtcggtttgGCTGGAGCTGGGTCGTTGGACATGACggggctacggtgcttgctcATGCTCACAACCCTGTTTCCACaggtgcctcatcccctgttagcg | |||||||
| ********************************************************************************************************************** | ||||||||
| >>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000057395 ENSRNOG00000002368 Iars2 | |||||||
| >>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000057394 ENSRNOG00000002368 Iars2 | |||||||
| >>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000057393 ENSRNOG00000002368 Iars2 | |||||||
| >>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000003222 ENSRNOG00000002368 Iars2 | |||||||
| >>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000057392 ENSRNOG00000002368 Iars2 | |||||||
| rat | .(((((.........(((((..(((..(((((((((.((((.((.((.(((((((((((....)).)))).))))))).)).)))).))).))).....)))..))).)))))))))) | 0.790 -40.90 | ||||||
| rat | chromosome:13:101331003:101331120:-1 | Same_strand|Intronic_coding|ENSRNOT00000057392|ENSRNOG00000002368 ## ENSRNOG00000002368|protein_coding|Iars2|isoleucine-tRNA synthetase 2, mitochondrial Gene [Source:MGI (curated);Acc:Iars2-001] |
sblock8867 [novel_lenNOK_cloningOK_multiarm_DicerNOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.090 | no | no | 0.48/0.57 | 18/23/0.50 | 0.0 0.0 | 0.2 1.3 | 8 10 | 0 0 | 4 8 | 0 0 | 20 17 | 3 5 | 5arm 3arm | 1 2 | 34 0 | 0.11 0.17 | 2 2 | 18 | 8 | 2 | 0 |
| reads | miRBase family seed | |||||||||
| seed | ------------------------------------------------------GUUCUGU-------------------------------- | 10 | novel | |||||||
| seed | ---------------------AGUGACA----------------------------------------------------------------- | 8 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------CAGTGACAGACACCTAACG------------------------------------------------------ | 19 | 2 | - | - | 3 | 1 | - | - | 1 | |
| -----------------------------------------------------TGTTCTGTGCTCTGTCACTCA------------------- | 21 | - | - | - | - | - | - | 3 | - | |
| -----------------------------------------------------TGTTCTGTGCTCTGTCAC---------------------- | 18 | - | - | - | - | 1 | - | - | 1 | |
| -----------------------------------------------------TGTTCTGTGCTCTGTCACTCAGG----------------- | 23 | 1 | 1 | - | - | - | - | - | - | |
| -----------------------------------------------------TGTTCTGTGCTCTGTCACTCAG------------------ | 22 | - | - | - | 1 | - | 1 | - | - | |
| -----------------------------------------------------TGTTCTGTGCTCTGTCACTC-------------------- | 20 | - | - | 1 | - | - | - | - | - | |
| --------------------CAGTGACAGACACCTAACGGC---------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | |
| rat | ggggacccatgtggaacgggCAGTGACAGACACCTAACGGCcctgacgagtgcTGTTCTGTGCTCTGTCACTCAGGgctctcggcgtacaccc | |||||||||
| ********************************************************************************************* | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000015426 ENSRNOG00000011519 LOC362304 | |||||||||
| rat | (((.....((((.((..((((((((((((((((..((((((.((....)).))))))..))).)))))))))....)))))).))))...))) | 0.950 -37.20 | ||||||||
| rat | chromosome:4:7988830:7988922:1 | Same_strand|Intronic_coding|ENSRNOT00000015426|ENSRNOG00000011519 ## Same_strand|Boundary_coding|ENSRNOT00000015426|ENSRNOG00000011519 ## ENSRNOG00000011519|protein_coding|LOC362304|similar to ORC5-related protein (LOC362304), mRNA [Source:RefSeq_dna;Acc:NM_001014186] |
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem (9 loci)
sblock10576 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.369 | no | no | 0.47/0.74 | 18/22/0.08 | 0.0 1.0 0.0 | 0.0 1.0 0.8 | 2 2 8 | 0 0 0 | 1 2 6 | 0 0 0 | 16 9 0 | -5 -4 8 | 5arm_loop 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.47 0.33 0.22 | 6 2 2 | 12 | 6 | 13 | 14 |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------CCAAGAU----------- | 8 | novel | |||||
| seed | -----------------UGCGCAG-------------------------------------------------- | 2 | novel | |||||
| seed | --------------------------------------------UCCCAGC----------------------- | 1 | novel | |||||
| seed | ----------------------------------------------CCAGCAG--------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T3S1 | T3S2 | T4S2 | T5S1 | |||
| -------------------------------------------------------GCCAAGATGGTGAGTATG- | 18 | 1 | 1 | 1 | 1 | 1 | 1 | |
| -------------------------------------------------------GCCAAGATGGTGAGTATGT | 19 | - | - | - | 2 | - | - | |
| ----------------CTGCGCAGCCGCTGACACC--------------------------------------- | 19 | 2 | - | - | - | - | - | |
| -------------------------------------------TTCCCAGCAGCCGCCAAGATGG--------- | 22 | - | - | 1 | - | - | - | |
| ---------------------------------------------CCCAGCAGCCGCCAAGAT----------- | 18 | - | - | - | 1 | - | - | |
| rat | gcagagctcgcgataaCTGCGCAGCCGCTGACACCgcttccttTTCCCAGCAGCCGCCAAGATGGTGAGTATGT | |||||||
| ************************************************************************** | ||||||||
| rat | (((..((((((.((...((.((.((.((((.................)))).)).))))..)).)))))).))) | 1.000 -21.63 | ||||||
| rat | chromosome:7:10928747:10928820:-1 | intergenic |
sblock10986 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.019 | no | no | 0.45/0.52 | 19/22/0.27 | 0.0 0.0 | 0.0 0.0 | 10 2 | 0 0 | 2 1 | 0 0 | 0 15 | 14 -2 | 5arm 3arm_loop | 2 2 | nd nd | 0.16 0.29 | 2 2 | 15 | 2 | -13 | -11 |
| reads | miRBase family seed | |||
| seed | -GCAUUUU---------------------------------------------------------------- | 13 | novel | |
| seed | -------------------------------------AGGCCAU---------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| TGCATTTTGGTGTCTGGTC----------------------------------------------------- | 19 | 1 | 10 | |
| ------------------------------------AAGGCCATCACCTGGATAGAG--------------- | 21 | - | 2 | |
| TGCATTTTGGTGTCTGGTCA---------------------------------------------------- | 20 | - | 1 | |
| TGCATTTTGGTGTCTGGTCAGG-------------------------------------------------- | 22 | - | 1 | |
| rat | TGCATTTTGGTGTCTGGTCaggagcaggtggctttgaaggccatcacctggatagaggtataggaaaatgtg | |||
| ************************************************************************ | ||||
| rat | .(((((((.(((((((..((((....(((((((.....))))))).))))..))))..)))...))))))). | 1.000 -23.00 | ||
| rat | chromosome:7:116621872:116621943:-1 | intergenic |
sblock2840 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.37/0.47 | 19/25/0.08 | 0.0 0.0 0.0 1.0 0.0 | 0.0 0.0 0.0 0.5 0.0 | 1 1 1 2 14 | 0 0 0 0 0 | 1 1 1 1 2 | 0 0 0 0 0 | 22 26 32 26 0 | 5 0 -11 9 37 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.42 0.35 0.36 0.20 0.61 | 3 3 4 2 6 | 24 | 3 | 0 | -13 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------------------------------CCCAGAG----------- | 15 | novel | ||
| seed | ---------------------------------------------------------------------------------------UCCCAGA------------ | 4 | novel | ||
| seed | ---------------------------------UCAGUUG------------------------------------------------------------------ | 1 | novel | ||
| seed | ---------------------------CGGUUUU------------------------------------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------------------------------GAUGUUG------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------CUGAUGU--------------------------------------- | 1 | novel | ||
| seed | -----------------------GGUCCGG---------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S2 | T5S1 | |||
| ---------------------------------------------------------------------------------------TCCCAGAGTTTTCAAGTTA | 19 | - | 1 | 14 | |
| --------------------------------------------------------------------------------------TTCCCAGAGTTTTCAAGTT- | 19 | - | - | 4 | |
| --------------------------------TTCAGTTGAATCTCCTTGGAGGACA------------------------------------------------- | 25 | - | - | 1 | |
| ----------------------TGGTCCGGTTTTCAGTTGA----------------------------------------------------------------- | 19 | 1 | - | - | |
| -----------------------------------------------------------TCTGATGTTGTGCCAGAACT--------------------------- | 20 | - | - | 1 | |
| -------------------------------------------------------------TGATGTTGTGCCAGAACTT-------------------------- | 19 | - | - | 1 | |
| --------------------------CCGGTTTTCAGTTGAATCTC------------------------------------------------------------ | 20 | - | - | 1 | |
| rat | ggtttctgaggttgaaagtttctggtccggttttcagttgaatctccttggaggacatttctgatgttgtgccagaactttccaactTCCCAGAGTTTTCAAGTTA | ||||
| ********************************************************************************************************** | |||||
| rat | ((.(((((((((((((((.((((((..(((...((((.((..((((....)))).))...))))..)))..))))))))))).))))))..))))...))...... | 1.000 -31.90 | |||
| rat | chromosome:10:92627980:92628085:1 | intergenic |
sblock4161 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.105 | no | no | 0.53/0.56 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 26 2 | 0 0 | 7 1 | 0 0 | 2 0 | 19 22 | 5arm 3arm | 1 1 | nd nd | 0.28 0.33 | 2 4 | 30 | 8 | 4 | 2 |
| reads | miRBase family seed | |||||||||
| seed | ---GGGAACA---------------------------------------------------------------------------- | 28 | novel | |||||||
| seed | --------------------------------------------------------------------CUGGAGG----------- | 2 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --TGGGAACATTCAGCAGGG------------------------------------------------------------------ | 18 | 6 | 1 | - | 3 | 1 | 6 | 5 | 6 | |
| -------------------------------------------------------------------CCTGGAGGTACTTAGACTC | 19 | - | - | 2 | - | - | - | - | - | |
| rat | acTGGGAACATTCAGCAGGGcacaggtgacattggcaggagctaacctgttctaaccactcgtctcaCCTGGAGGTACTTAGACTC | |||||||||
| ************************************************************************************** | ||||||||||
| rat | .(((((.((.(((((..(((.((..(((.....((((((......)))))).....)))..)))))..))))).)).))))).... | 0.920 -25.40 | ||||||||
| rat | chromosome:14:101189540:101189625:-1 | intergenic |
sblock4404 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.259 | no | no | 0.32/0.47 | 18/25/0.17 | 0.0 0.5 0.0 | 3.0 0.0 0.0 | 2 4 22 | 0 0 0 | 1 2 4 | 0 0 0 | 10 25 2 | -2 -12 7 | 5arm_loop 5arm_loop_3arm 3arm | 2 2 2 | nd nd nd | 0.32 0.47 0.16 | 4 7 2 | 42 | 5 | 11 | 4 |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------ACCAAAC------------- | 29 | novel | ||||
| seed | ---------------------------------------------AAUACCA---------------- | 3 | novel | ||||
| seed | -----------AAGACGU-------------------------------------------------- | 2 | novel | ||||
| seed | ---------------------------AGUCAAG---------------------------------- | 2 | novel | ||||
| seed | --------------------------GAGUCAA----------------------------------- | 2 | novel | ||||
| seed | ------------------------------------------ACUAAUA------------------- | 2 | novel | ||||
| seed | -----------------------------------------UACUAAU-------------------- | 1 | novel | ||||
| seed | -------------------------------------------------CCAAACC------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T5S1 | T5S2 | |||
| -----------------------------------------------TACCAAACCTCTAGACTTG-- | 19 | - | 3 | 1 | 22 | 2 | |
| --------------------------------------------TAATACCAAACCTCTAGACT---- | 20 | - | - | - | 3 | - | |
| -----------------------------------------TACTAATACCAAACCTCTAGACT---- | 23 | - | - | - | 2 | - | |
| --------------------------GAGTCAAGGCCTCATTACT----------------------- | 19 | - | - | - | 2 | - | |
| -------------------------AGAGTCAAGGCCTCATTACT----------------------- | 20 | 1 | - | - | 1 | - | |
| -----------------------------------------------TACCAAACCTCTAGACTT--- | 18 | - | - | - | 1 | - | |
| ------------------------------------------------ACCAAACCTCTAGACTTGG- | 19 | - | - | - | 1 | - | |
| ----------TAAGACGTTTGGTCAAGAG--------------------------------------- | 19 | - | - | - | 1 | - | |
| ----------------------------------------TTACTAATACCAAACCTCT--------- | 19 | - | - | - | 1 | - | |
| ----------TAAGACGTTTGGTCAAGAGTCAAGG--------------------------------- | 25 | - | - | - | 1 | - | |
| rat | ctcacaacagtaagacgtttggtcaagagtcaaggcctcattactaaTACCAAACCTCTAGACTTGgg | ||||||
| ******************************************************************** | |||||||
| rat | ((((....(((.(((.(((((((....(((.((.......)))))...))))))).)))..))))))) | 0.990 -12.20 | |||||
| rat | chromosome:15:256369:256436:-1 | intergenic |
sblock5651 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.178 | no | no | 0.37/0.79 | 18/19/0.00 | 0.0 0.0 | 0.0 0.2 | 1 9 | 0 0 | 1 4 | 0 0 | 0 1 | 34 30 | 5arm 3arm | 1 3 | nd nd | 0.32 0.26 | 4 2 | 10 | 5 | -5 | -2 |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------------------------------------------------------------CUGGCUG------------ | 9 | novel | ||||
| seed | -UUCUGUU------------------------------------------------------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T4S1 | T4S2 | |||
| ------------------------------------------------------------------------------------------------GCTGGCTGGGGAGGGCAG-- | 18 | 3 | 3 | 1 | - | - | |
| ------------------------------------------------------------------------------------------------GCTGGCTGGGGAGGGCAGG- | 19 | 1 | - | - | - | 1 | |
| TTTCTGTTCGGGATTTTTG------------------------------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| rat | TTTCTGTTCGGGATTTTTGttggctttttagacaactgcctttctttttttttttttttttttcttgacaaattagcattggatccagttgtgaggGCTGGCTGGGGAGGGCAGGa | ||||||
| ******************************************************************************************************************** | |||||||
| rat | .((((((((....(((..((..((((((...(((((((((...((..(((.((.............)).)))..))....))...)))))))))))))..))..))).)))))))) | 0.990 -25.22 | |||||
| rat | chromosome:18:28649257:28649372:1 | intergenic |
sblock9391 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.546 | no | no | 0.30/0.62 | 18/23/0.23 | 0.0 0.0 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 0.0 0.0 | 5 1 1 1 1 1 2 | 0 0 0 0 0 0 0 | 1 1 1 1 1 1 1 | 0 0 0 0 0 0 0 | 1 21 33 54 21 7 1 | 38 14 6 -17 11 27 32 | 5arm 5arm 5arm 5arm_loop_3arm 3arm 3arm 3arm | 1 1 1 1 1 1 1 | nd nd nd nd nd nd nd | 0.74 0.48 0.37 0.48 0.20 0.67 0.63 | 9 10 6 5 2 7 9 | 13 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | --AGAAGUA---------------------------------------------------------------------------------------------------------- | 6 | novel | |
| seed | ------------------------------------------------------------------------------------------------AGCCAUG------------ | 2 | novel | |
| seed | ----------------------AGGAGGG-------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------UAUGAAU-------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------GCAAUGG----------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------------------------CCUUUAG----------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------AAGACAU--------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| -TAGAAGTATCAAATGCACA----------------------------------------------------------------------------------------------- | 19 | - | 5 | |
| -----------------------------------------------------------------------------------------------TAGCCATGTTATCAAGCTG- | 19 | - | 2 | |
| ------------------------------------------------------------------------------------------TCCTTTAGCCATGTTATC------- | 18 | - | 1 | |
| -TAGAAGTATCAAATGCAC------------------------------------------------------------------------------------------------ | 18 | - | 1 | |
| ------------------------------------------------------GGCAATGGCTGCCACTGCAGT---------------------------------------- | 21 | - | 1 | |
| ---------------------------------TTATGAATTCTGTGTCAGT--------------------------------------------------------------- | 19 | - | 1 | |
| ---------------------TAGGAGGGTTTATTATGAATTCT----------------------------------------------------------------------- | 23 | - | 1 | |
| --------------------------------------------------------------------------TAAGACATGGGGGCCATCCT--------------------- | 20 | 1 | - | |
| rat | aTAGAAGTATCAAATGCACAataggagggtttattatgaattctgtgtcagtagggcaatggctgccactgcagtaagacatgggggccatccttTAGCCATGTTATCAAGCTGt | |||
| ******************************************************************************************************************* | ||||
| rat | ((((.........(((......((((.(((..........(((((((((.((((((((.....)))).)))).....)))))))))))).)))).....))).........)))) | 0.410 -25.77 | ||
| rat | chromosome:5:114521974:114522088:-1 | intergenic |
sblock9422 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.036 | no | no | 0.37/0.52 | 19/23/0.18 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 8 | 0 0 0 | 1 1 3 | 0 0 0 | 0 9 0 | -2 10 21 | 5arm_loop 3arm 3arm | 1 1 1 | nd nd nd | 0.17 0.52 0.94 | 3 9 17 | 11 | 3 | 20 | 10 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------CUCAUGU----------- | 9 | novel | ||
| seed | -GAUUUGC--------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------AUGGCAC---------------------- | 1 | miR-183 | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------------------------------------------------TCTCATGTCATTCTTGTCA | 19 | 1 | 3 | 5 | |
| TGATTTGCCATGAGGAGGCTCAC------------------------------------------------ | 23 | - | - | 1 | |
| -----------------------------------------TATGGCACCAGTCTCATGTCA--------- | 21 | - | - | 1 | |
| rat | tgatttgccatgaggaggctcacacaggagagggccccttctatggcaccagTCTCATGTCATTCTTGTCA | ||||
| *********************************************************************** | |||||
| rat | .((((((((((((((.(((((..........))))).)))).))))))..))))................. | 0.410 -22.20 | |||
| rat | chromosome:5:114554568:114554638:-1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31005 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.