other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem (9 loci)
sblock9444 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.259 | no | no | 0.33/0.42 | 19/21/0.52 | 0.9 1.5 0.0 0.0 | 1.0 0.5 0.0 0.0 | 14 2 1 1 | 0 0 0 0 | 4 1 1 1 | 0 0 0 0 | 4 25 18 13 | 16 -20 6 11 | 5arm 3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.26 0.05 0.16 0.42 | 2 1 2 7 | 23 | 4 | -12 | -14 |
| reads | miRBase family seed | |||||
| seed | ---------ACAGAAC-------------------------------------------------------------------------- | 9 | novel | |||
| seed | --------AACAGAA--------------------------------------------------------------------------- | 7 | novel | |||
| seed | -----AGUAACA------------------------------------------------------------------------------ | 3 | novel | |||
| seed | --------------------------------------------GAUAUCA--------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------AAGAUGU----------------------------- | 1 | novel | |||
| seed | -----------------------------------------------AUCAGUU------------------------------------ | 1 | novel | |||
| seed | -----------------------------------------------------------GUGUCCG------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| --------AACAGAACATACAGGATGCT-------------------------------------------------------------- | 20 | 1 | 2 | 1 | 4 | |
| -------TAACAGAACATACAGGATG---------------------------------------------------------------- | 19 | - | - | - | 7 | |
| ----TAGTAACAGAACATACAGGA------------------------------------------------------------------ | 20 | - | - | - | 3 | |
| -------------------------------------------TGATATCAGTTAAGATGTGTC-------------------------- | 21 | - | - | - | 1 | |
| ----------------------------------------------------------TGTGTCCGTTTGTAATCCA------------- | 19 | - | - | - | 1 | |
| ----------------------------------------------TATCAGTTAAGATGTGTCC------------------------- | 19 | - | - | - | 1 | |
| --------AACAGAACATACAGGATGC--------------------------------------------------------------- | 19 | - | - | - | 1 | |
| -----------------------------------------------------TAAGATGTGTCCGTTTGTA------------------ | 19 | - | - | - | 1 | |
| rat | cactTAGTAACAGAACATACAGGATGCTatcaagtcttgctgatgatatcagttaagatgtgtccgtttgtaatccatcctgggacgagt | |||||
| ****************************************************************************************** | ||||||
| rat | .((((.((..(((.(((.((.((((((......(((((((((((...)))))).))))))))))))).)))........)))..)))))) | 0.590 -20.20 | ||||
| rat | chromosome:5:114559121:114559210:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerOK_Multihit_bulgeHIGH (9 loci)
sblock1498 [novel_lenNOK_cloningOK_multiarm_DicerOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.203 | no | no | 0.37/0.58 | 18/23/0.39 | 0.0 3.0 0.0 0.0 0.0 | 0.5 2.7 0.0 0.0 0.0 | 2 3 1 8 12 | 0 0 0 0 0 | 1 2 1 2 1 | 0 0 0 0 0 | 2 8 45 26 16 | 28 16 -13 0 14 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 23 27 27 27 31 | nd nd nd nd nd | 0.37 0.53 0.44 0.30 0.58 | 4 10 7 6 10 | 31 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------CCAAAUU--------------------------- | 12 | novel | |
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ---------------AGGACCA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------TCCAAATTGCAAGACCTTT---------------- | 19 | - | 12 | |
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| --------------AAGGACCAATATTGTGGTAG------------------------------------------------------------------------ | 20 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGCAAGACCTTTacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.900 -30.15 | ||
| rat | chromosome:1:51598055:51598160:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1569 [novel_lenNOK_cloningOK_multiarm_DicerOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.196 | no | no | 0.37/0.58 | 18/23/0.39 | 0.0 3.0 0.0 0.0 0.0 | 0.5 2.7 0.0 0.0 0.0 | 2 3 1 8 12 | 0 0 0 0 0 | 1 2 1 2 1 | 0 0 0 0 0 | 2 8 45 26 16 | 28 16 -13 0 14 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 23 27 27 27 31 | nd nd nd nd nd | 0.37 0.53 0.44 0.30 0.58 | 4 10 7 6 10 | 31 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------CCAAAUU--------------------------- | 12 | novel | |
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ---------------AGGACCA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------TCCAAATTGCAAGACCTTT---------------- | 19 | - | 12 | |
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| --------------AAGGACCAATATTGTGGTAG------------------------------------------------------------------------ | 20 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGCAAGACCTTTatgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.890 -30.15 | ||
| rat | chromosome:1:52000845:52000950:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1605 [novel_lenNOK_cloningOK_multiarm_DicerOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.203 | no | no | 0.37/0.58 | 18/23/0.39 | 0.0 3.0 0.0 0.0 0.0 | 0.5 2.7 0.0 0.0 0.0 | 2 3 1 8 12 | 0 0 0 0 0 | 1 2 1 2 1 | 0 0 0 0 0 | 2 8 45 26 16 | 28 16 -13 0 14 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 23 27 27 27 31 | nd nd nd nd nd | 0.37 0.53 0.44 0.30 0.58 | 4 10 7 6 10 | 31 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------CCAAAUU--------------------------- | 12 | novel | |
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ---------------AGGACCA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------TCCAAATTGCAAGACCTTT---------------- | 19 | - | 12 | |
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| --------------AAGGACCAATATTGTGGTAG------------------------------------------------------------------------ | 20 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGCAAGACCTTTacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.900 -30.15 | ||
| rat | chromosome:1:52232556:52232661:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1678 [novel_lenNOK_cloningOK_multiarm_DicerOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.203 | no | no | 0.37/0.58 | 18/23/0.39 | 0.0 3.0 0.0 0.0 0.0 | 0.5 2.7 0.0 0.0 0.0 | 2 3 1 8 12 | 0 0 0 0 0 | 1 2 1 2 1 | 0 0 0 0 0 | 2 8 45 26 16 | 28 16 -13 0 14 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 23 27 27 27 31 | nd nd nd nd nd | 0.37 0.53 0.44 0.30 0.58 | 4 10 7 6 10 | 31 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------CCAAAUU--------------------------- | 12 | novel | |
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ---------------AGGACCA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------TCCAAATTGCAAGACCTTT---------------- | 19 | - | 12 | |
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| --------------AAGGACCAATATTGTGGTAG------------------------------------------------------------------------ | 20 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGCAAGACCTTTacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059908 ENSRNOG00000030267 RGD1561185_predicted | |||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.900 -30.15 | ||
| rat | chromosome:1:52817597:52817702:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000059908|ENSRNOG00000030267 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059909|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
sblock223 [novel_lenNOK_cloningOK_multiarm_DicerOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.203 | no | no | 0.37/0.58 | 18/23/0.39 | 0.0 3.0 0.0 0.0 0.0 | 0.5 2.7 0.0 0.0 0.0 | 2 3 1 8 12 | 0 0 0 0 0 | 1 2 1 2 1 | 0 0 0 0 0 | 2 8 45 26 16 | 28 16 -13 0 14 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 23 27 27 27 31 | nd nd nd nd nd | 0.37 0.53 0.44 0.30 0.58 | 4 10 7 6 10 | 31 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------CCAAAUU--------------------------- | 12 | novel | |
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ---------------AGGACCA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------TCCAAATTGCAAGACCTTT---------------- | 19 | - | 12 | |
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| --------------AAGGACCAATATTGTGGTAG------------------------------------------------------------------------ | 20 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGCAAGACCTTTacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.900 -30.15 | ||
| rat | chromosome:1:49951473:49951578:-1 | intergenic |
sblock234 [novel_lenNOK_cloningOK_multiarm_DicerOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.203 | no | no | 0.37/0.58 | 18/23/0.39 | 0.0 3.0 0.0 0.0 0.0 | 0.5 2.7 0.0 0.0 0.0 | 2 3 1 8 12 | 0 0 0 0 0 | 1 2 1 2 1 | 0 0 0 0 0 | 2 8 45 26 16 | 28 16 -13 0 14 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 23 27 27 27 31 | nd nd nd nd nd | 0.37 0.53 0.44 0.30 0.58 | 4 10 7 6 10 | 31 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------CCAAAUU--------------------------- | 12 | novel | |
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ---------------AGGACCA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------TCCAAATTGCAAGACCTTT---------------- | 19 | - | 12 | |
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| --------------AAGGACCAATATTGTGGTAG------------------------------------------------------------------------ | 20 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGCAAGACCTTTacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.900 -30.15 | ||
| rat | chromosome:1:50002380:50002485:-1 | intergenic |
sblock270 [novel_lenNOK_cloningOK_multiarm_DicerOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.203 | no | no | 0.37/0.58 | 18/23/0.39 | 0.0 3.0 0.0 0.0 0.0 | 0.5 2.7 0.0 0.0 0.0 | 2 3 1 8 12 | 0 0 0 0 0 | 1 2 1 2 1 | 0 0 0 0 0 | 2 8 45 26 16 | 28 16 -13 0 14 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 23 27 27 27 31 | nd nd nd nd nd | 0.37 0.53 0.44 0.30 0.58 | 4 10 7 6 10 | 31 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------CCAAAUU--------------------------- | 12 | novel | |
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ---------------AGGACCA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------TCCAAATTGCAAGACCTTT---------------- | 19 | - | 12 | |
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| --------------AAGGACCAATATTGTGGTAG------------------------------------------------------------------------ | 20 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGCAAGACCTTTacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | |||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.900 -30.15 | ||
| rat | chromosome:1:50179535:50179640:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock317 [novel_lenNOK_cloningOK_multiarm_DicerOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.203 | no | no | 0.37/0.58 | 18/23/0.39 | 0.0 3.0 0.0 0.0 0.0 | 0.5 2.7 0.0 0.0 0.0 | 2 3 1 8 12 | 0 0 0 0 0 | 1 2 1 2 1 | 0 0 0 0 0 | 2 8 45 26 16 | 28 16 -13 0 14 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 23 27 27 27 31 | nd nd nd nd nd | 0.37 0.53 0.44 0.30 0.58 | 4 10 7 6 10 | 31 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------CCAAAUU--------------------------- | 12 | novel | |
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ---------------AGGACCA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------TCCAAATTGCAAGACCTTT---------------- | 19 | - | 12 | |
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| --------------AAGGACCAATATTGTGGTAG------------------------------------------------------------------------ | 20 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGCAAGACCTTTacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.900 -30.15 | ||
| rat | chromosome:1:50355233:50355338:-1 | intergenic |
sblock466 [novel_lenNOK_cloningOK_multiarm_DicerOK_Multihit_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.203 | no | no | 0.37/0.58 | 18/23/0.39 | 0.0 3.0 0.0 0.0 0.0 | 0.5 2.7 0.0 0.0 0.0 | 2 3 1 8 12 | 0 0 0 0 0 | 1 2 1 2 1 | 0 0 0 0 0 | 2 8 45 26 16 | 28 16 -13 0 14 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 23 27 27 27 31 | nd nd nd nd nd | 0.37 0.53 0.44 0.30 0.58 | 4 10 7 6 10 | 31 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------------------CCAAAUU--------------------------- | 12 | novel | |
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ---CUCCACA------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | ---------------AGGACCA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------------------------------------TCCAAATTGCAAGACCTTT---------------- | 19 | - | 12 | |
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| --CCTCCACAGTCAAAGGACC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| --------------AAGGACCAATATTGTGGTAG------------------------------------------------------------------------ | 20 | - | 1 | |
| --CCTCCACAGTCAAAGGACCA------------------------------------------------------------------------------------ | 20 | - | 1 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctccacagtcaaaggaccaatattgtggtagggcgtctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGCAAGACCTTTacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000041486 ENSRNOG00000033456 LOC308198 | |||
| rat | (((.((((..((((((((..........(((.((((..((((.((.((((.......)))))).)))))))))))..........)))))...)))..)))).))) | 0.900 -30.15 | ||
| rat | chromosome:1:52394445:52394550:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000044415|ENSRNOG00000033456 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041486|ENSRNOG00000033456 ## ENSRNOG00000033456|protein_coding|LOC308198| |
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