other hairpins
novel_lenNOK_multiarm_DicerNOK_5varHIGH_randfoldOK (9 loci)
sblock2654 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.37/0.63 | 18/20/0.14 | 0.0 2.2 0.5 | 0.0 1.8 1.0 | 1 4 2 | 0 0 0 | 1 3 2 | 0 0 0 | 23 19 4 | 4 8 26 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.17 0.21 0.37 | 2 3 5 | 7 | 5 | 9 | 10 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------------------------------------CGCCUGA----------------------------- | 2 | novel | ||||
| seed | -----------------------------------------------------------------------------CCUAUCU---------------- | 1 | novel | ||||
| seed | -------------------------------------------------------------CUUCGCC-------------------------------- | 1 | novel | ||||
| seed | ------------------------CAGAGCG--------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------AGUCUUC----------------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------------------------ACCUAUC----------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T4S2 | |||
| ---------------------------------------------------------------TCGCCTGAGCCAGACCTA------------------- | 18 | - | - | 2 | - | - | |
| -----------------------ACAGAGCGAAGAAGGACC----------------------------------------------------------- | 18 | 1 | - | - | - | - | |
| ----------------------------------------------------------------------------ACCTATCTTTGCAAACTAGC---- | 20 | - | 1 | - | - | - | |
| ---------------------------------------------------------------------------GACCTATCTTTGCAAACTA------ | 19 | - | - | - | 1 | - | |
| ------------------------------------------------------------TCTTCGCCTGAGCCAGACC--------------------- | 19 | - | - | - | - | 1 | |
| ---------------------------------------------------------CAGTCTTCGCCTGAGCCAG------------------------ | 19 | - | - | - | 1 | - | |
| rat | gatcctgggaaggaggagggggtACAGAGCGAAGAAGGACCgcgcatgtgcgcggctCAGTCTTCGCCTGAGCCAGACCTATCTTTGCAAACTAGCttcc | ||||||
| **************************************************************************************************** | |||||||
| rat | ((..((((...((((((((.(((.(((.(((((((..((((((((....)))))).))..)))))))))).)))...))).))))).....))))..)). | 0.980 -47.70 | |||||
| rat | chromosome:10:46129899:46129998:1 | intergenic |
sblock5726 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.40/0.52 | 24/25/0.33 | 0.0 4.0 | 0.0 3.5 | 1 2 | 0 0 | 1 2 | 0 0 | 24 0 | 4 19 | 5arm 3arm | 1 1 | nd nd | 0.28 0.13 | 4 3 | 3 | 2 | 14 | 14 |
| reads | miRBase family seed | |||
| seed | -------------------------CACAGUG------------------------------------------------------------------------------- | 1 | miR-128 | |
| seed | ----------------------------------------------------------------------------------------GAAUUCC---------------- | 1 | novel | |
| seed | --------------------------------------------------------------------------------UGCACUU------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| -------------------------------------------------------------------------------TTGCACTTTGAATTCCTTCCCTAAC------- | 25 | 1 | - | |
| ---------------------------------------------------------------------------------------TGAATTCCTTCCCTAACTGCCTCT | 24 | - | 1 | |
| ------------------------TCACAGTGCGAGTTTCCTCAGAGTC-------------------------------------------------------------- | 25 | - | 1 | |
| rat | gggggcggggggaggaggcaaactTCACAGTGCGAGTTTCCTCAGAGTCaggaggtttaatccaggtttgtgtttcagcTTGCACTTTGAATTCCTTCCCTAACTGCCTCT | |||
| *************************************************************************************************************** | ||||
| rat | (((((((((((((((((......((((.((((((((((....((((.((.(((.......))).))))))......)))))))))).)))))))))))))...)))))))) | 0.850 -45.40 | ||
| rat | chromosome:19:15927273:15927383:-1 | intergenic |
sblock6647 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.40/0.58 | 18/23/0.33 | 0.0 2.2 0.8 | 0.0 0.5 0.8 | 1 4 4 | 0 0 0 | 1 3 3 | 0 0 0 | 31 25 15 | 11 6 19 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.11 0.16 0.47 | 1 3 8 | 9 | 5 | -5 | 1 |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------------------------------------------------------UGAGACA-------------------------- | 3 | novel | ||||
| seed | -----------------------------------------------------------------------CCCACUU------------------------------------------ | 2 | novel | ||||
| seed | ----------------------------------------------------------------------------UUCUUUG------------------------------------- | 1 | novel | ||||
| seed | --------------------------------CUCACAU--------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------------------------------------GUGUGAG----------------------------- | 1 | novel | ||||
| seed | ---------------------------------------------------------------------------CUUCUUU-------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | |||
| ----------------------------------------------------------------------TCCCACTTCTTTGTGTGTGAGAC--------------------------- | 23 | - | - | - | 2 | - | |
| --------------------------------------------------------------------------------------GTGAGACAAGCAGAACGC---------------- | 18 | 2 | - | - | - | - | |
| --------------------------------------------------------------------------------------GTGAGACAAGCAGAACGCC--------------- | 19 | - | 1 | - | - | - | |
| -----------------------------------------------------------------------------------TGTGTGAGACAAGCAGAAC------------------ | 19 | - | - | - | - | 1 | |
| --------------------------------------------------------------------------ACTTCTTTGTGTGTGAGAC--------------------------- | 19 | - | - | 1 | - | - | |
| ---------------------------------------------------------------------------CTTCTTTGTGTGTGAGACAA------------------------- | 20 | 1 | - | - | - | - | |
| -------------------------------GCTCACATACAAAAGATGG---------------------------------------------------------------------- | 19 | - | 1 | - | - | - | |
| rat | tctggttagcagtcttcaaaagggttaatgaGCTCACATACAAAAGATGGtggatcttgtggcccagaagTCCCACTTCTTTGTGTGTGAGACAAGCAGAACGCCtttcaatttgccaga | ||||||
| ************************************************************************************************************************ | |||||||
| rat | ((((((............((((((((......(((((((((.(((((.(((((..(((.((...)).)))..)))))))))))))))))))........))).)))))......)))))) | 0.940 -38.71 | |||||
| rat | chromosome:20:2983425:2983544:-1 | intergenic |
sblock9058 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.45/0.52 | 22/25/0.67 | 0.0 1.5 | 1.0 1.5 | 4 2 | 0 0 | 1 1 | 0 0 | 6 19 | 13 0 | 5arm 3arm | 1 1 | nd nd | 0.24 0.13 | 3 1 | 6 | 1 | -13 | -14 |
| reads | miRBase family seed | ||
| seed | -------AAGCAGA------------------------------------------------------------------------------ | 4 | novel |
| seed | ---------------------------------------------------CCUAAGA---------------------------------- | 1 | novel |
| seed | ------------------------------------------------AAGCCUA------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------TAAGCAGACTTGACAGTCCAACCAG------------------------------------------------------------- | 25 | 2 | |
| -----------------------------------------------GAAGCCTAAGAAGCTGGTGATGT---------------------- | 23 | 1 | |
| --------------------------------------------------GCCTAAGAAGCTGGTGATGTGTC------------------- | 23 | 1 | |
| ------TAAGCAGACTTGACAGTCCAAC---------------------------------------------------------------- | 22 | 1 | |
| ------TAAGCAGACTTGACAGTCCAACCA-------------------------------------------------------------- | 24 | 1 | |
| rat | aatgtcTAAGCAGACTTGACAGTCCAACCAGcctcctaggttttggaGAAGCCTAAGAAGCTGGTGATGTGTCcagaatctcacatggatat | ||
| ******************************************************************************************** | |||
| rat | .(((((((...(((((.(((((((..((((((.((.((((((((...)))))))).)).))))))))).)))).))..)))....))))))) | 0.490 -30.00 |
| rat | chromosome:4:164247069:164247160:1 | intergenic |
sblock9191 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.37/0.50 | 19/24/0.57 | 1.3 0.0 0.0 0.5 | 0.0 0.0 0.0 0.5 | 3 1 1 2 | 0 0 0 0 | 2 1 1 2 | 0 0 0 0 | 1 10 20 27 | 28 18 8 15 | 5arm 5arm 5arm 3arm | 1 1 1 1 | nd nd nd nd | 0.11 0.08 0.08 0.26 | 1 1 1 3 | 7 | 4 | -17 | -15 |
| reads | miRBase family seed | |||||
| seed | ------CCAAUAC----------------------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | -------------------------------------------------------------------------UCUACCA---------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------------------------CUACCAU--------------------------------------- | 1 | novel | |||
| seed | --AUGUCCA--------------------------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------CAGCAAA-------------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------ACUCAGU------------------------------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T4S2 | T5S1 | |||
| -----TCCAATACTCAGTGTTCAG------------------------------------------------------------------------------------------------ | 19 | - | - | 2 | - | |
| --------------------TCAGCAAAGGATGTGGACTGAGTC---------------------------------------------------------------------------- | 24 | - | - | - | 1 | |
| ------------------------------------------------------------------------TTCTACCATATTGTTTGCTGC--------------------------- | 21 | - | 1 | - | - | |
| -------------------------------------------------------------------------TCTACCATATTGTTTGCTG---------------------------- | 19 | - | - | - | 1 | |
| ----------TACTCAGTGTTCAGCAAAGGATGT-------------------------------------------------------------------------------------- | 24 | 1 | - | - | - | |
| -TATGTCCAATACTCAGTGTTCAG------------------------------------------------------------------------------------------------ | 23 | - | - | - | 1 | |
| rat | gTATGTCCAATACTCAGTGTTCAGCAAAGGATGTGGACTGAGTCattgtgactctcagtccgtgttgtttagTTCTACCATATTGTTTGCTGCggaagggagctgggtattgtaagtgct | |||||
| ************************************************************************************************************************ | ||||||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000008737 ENSRNOG00000006444 Fkbp4 | |||||
| rat | ((((...(((((((((((.(((((((((.(((((((((((((.((.((.(((.....)))))...))))))))....))))))).)))))))..)).....)))))))))))...)))). | 0.440 -42.10 | ||||
| rat | chromosome:4:165461052:165461171:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000008737|ENSRNOG00000006444 ## ENSRNOG00000006444|protein_coding|Fkbp4|FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (p59 protein) (HSP-binding immunophilin) (HBI) (FKBP52 protein) (52 kDa FK506-binding protein) (FKBP59) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:Q9QVC8] |
novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH_bulgeHIGH (9 loci)
sblock11806 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.44/0.60 | 18/26/0.22 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 3.8 | 1 1 1 6 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 8 15 20 9 | 12 6 -5 17 | 5arm 5arm 5arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.45 0.37 0.48 0.50 | 5 5 6 4 | 9 | 3 | 19 | 20 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------------AGACAGA--------------------------- | 6 | novel | ||
| seed | ---------------------GGACCCU------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ---------ACGCCUU------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ----------------CCUCUGG----------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S1 | |||
| -----------------------------------------------------------------------TAGACAGAGTGAGGCCAGAAACAAAG--------- | 26 | - | - | 2 | |
| -----------------------------------------------------------------------TAGACAGAGTGAGGCCAG----------------- | 18 | - | - | 2 | |
| --------TACGCCTTCCTCTGGACCCT------------------------------------------------------------------------------ | 20 | - | - | 1 | |
| -----------------------------------------------------------------------TAGACAGAGTGAGGCCAGAAACAA----------- | 24 | - | - | 1 | |
| --------------------TGGACCCTCATGCTTTAATGCTCAA------------------------------------------------------------- | 25 | 1 | - | - | |
| -----------------------------------------------------------------------TAGACAGAGTGAGGCCAGA---------------- | 19 | - | - | 1 | |
| ---------------TCCTCTGGACCCTCATGCT------------------------------------------------------------------------ | 19 | - | 1 | - | |
| rat | ctgctcccTACGCCTTCCTCTGGACCCTCATGCTTTAATGCTCAAtcaagtcaacattgagagcctgactcTAGACAGAGTGAGGCCAGAAACAAAGggagacagg | ||||
| ********************************************************************************************************** | |||||
| rat | (((((((((..((((..(((((.....(((.(((((((((..............)))))).))).))).......)))))..)))).........)))))).))). | 0.620 -33.74 | |||
| rat | chromosome:8:72073922:72074027:-1 | intergenic |
sblock2050 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.50/0.61 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 4 33 | 17 0 | 5arm 3arm | 2 2 | nd nd | 0.39 0.39 | 5 6 | 4 | 3 | -16 | -15 |
| reads | miRBase family seed | ||||
| seed | -----UCCUGUG---------------------------------------------------------------------------------- | 3 | novel | ||
| seed | --------------------------------------------UUCCAGG------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T5S1 | T5S2 | |||
| ----CTCCTGTGAGGTCCAGAG------------------------------------------------------------------------ | 18 | 2 | 1 | - | |
| -------------------------------------------TTTCCAGGGACTTGAAGG--------------------------------- | 18 | - | - | 1 | |
| rat | ggggCTCCTGTGAGGTCCAGAGgagagtcccagaggagagtcgTTTCCAGGGACTTGAAGGagggaacaaggagaactcagaggaatctgctcc | ||||
| ********************************************************************************************** | |||||
| rat | (((((((((.((((.(((......(((((((...(((((....))))).))))))).......)))..........)))).))))....))))) | 0.970 -34.92 | |||
| rat | chromosome:1:160070905:160070998:1 | intergenic ## {Repeats: trf 21 26 0 class=trf} |
sblock2951 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.43/0.61 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 8 | 38 14 | 5arm 3arm | 3 3 | nd nd | 0.44 0.33 | 4 4 | 2 | 2 | -6 | -3 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------------GAGCGAA--------------------- | 1 | novel | |
| seed | -----CCCCACC------------------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ----TCCCCACCCTCCCTTCTT-------------------------------------------------------------------------------------------- | 18 | 1 | - | |
| -------------------------------------------------------------------------------------TGAGCGAACAAGTTAGGATAC-------- | 21 | - | 1 | |
| rat | ctctTCCCCACCCTCCCTTCTTccgctcacctccgtccatttctctcatatcttcttgccaaaagctccaaggcaaagatggacaTGAGCGAACAAGTTAGGATACggccgagc | |||
| ****************************************************************************************************************** | ||||
| rat | (((..((....(((..(((.((.((((((.....((((((((.............(((((...........))))))))))))).)))))))).)))..)))....))..))). | 0.830 -29.41 | ||
| rat | chromosome:11:51458817:51458930:-1 | intergenic |
sblock4577 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 15 12 | 18 20 | 5arm 3arm | 1 2 | nd nd | 0.61 0.44 | 5 5 | 2 | 2 | 3 | 4 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------GCAAGGC---------------------- | 1 | novel | |
| seed | ----------------AGAGGCC--------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| --------------------------------------------------------------------------AGCAAGGCAGGAAAGAGG------------ | 18 | 1 | - | |
| ---------------TAGAGGCCTGGTGTGGAA----------------------------------------------------------------------- | 18 | - | 1 | |
| rat | ctccactgtagcattTAGAGGCCTGGTGTGGAAactgcattcaatgaaggcagggcaggggacagaatggggaaAGCAAGGCAGGAAAGAGGagacagaggaga | |||
| ******************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000010260 ENSRNOG00000007378 Acox2 | |||
| rat | ((((.((((....(((....((((..(((.....((.(((((.......((...))........))))).))...))))))).....)))....)))).)))). | 0.840 -24.46 | ||
| rat | chromosome:15:18650232:18650335:1 | Same_strand|Intronic_coding|ENSRNOT00000010260|ENSRNOG00000007378 ## ENSRNOG00000007378|protein_coding|Acox2|Acyl-coenzyme A oxidase 2, peroxisomal (EC 1.17.99.3) (3-alpha,7- alpha,12-alpha-trihydroxy-5-beta-cholestanoyl-CoA 24-hydroxylase) (3- alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanoyl-CoA oxidase) (Trihydroxycoprostanoyl-CoA oxidase) (THCCox) (THCA- [Source:UniProtKB/Swiss-Prot;Acc:P97562] |
sblock5478 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.58/0.67 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 25 29 | 15 10 | 5arm 3arm | 1 1 | nd nd | 0.39 0.42 | 4 3 | 2 | 1 | -7 | -5 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------CUCCCAG---------------------------------------- | 1 | novel |
| seed | --------------------------GGCCUCC--------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ------------------------------------------------------------------------TCTCCCAGACCTCTGGACA----------------------------- | 19 | 1 | |
| -------------------------AGGCCTCCCCAGAACAGC----------------------------------------------------------------------------- | 18 | 1 | |
| rat | gggctccacagcagagcagctgctgAGGCCTCCCCAGAACAGCtggaacagcccgaccctagggtcctggcaTCTCCCAGACCTCTGGACAggactcaccttccctctcctgcccagccc | ||
| ************************************************************************************************************************ | |||
| rat | (((((...(((.((((.......((((.(((..(((((....((((....(((.((((....))))..))).....))))...)))))..))).))))......)))).)))...))))) | 0.620 -46.82 |
| rat | chromosome:18:31136216:31136335:-1 | intergenic |
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