other hairpins
novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH_bulgeHIGH (9 loci)
sblock5721 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.65/0.74 | 19/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 20 23 | 8 4 | 5arm 3arm | 1 1 | nd nd | 0.37 0.35 | 3 4 | 2 | 1 | -3 | -1 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------CAGGACC----------------------------------- | 1 | novel |
| seed | ---------------------CCAGCGU------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| --------------------ACCAGCGTCACGGGGACCC------------------------------------------------------------- | 19 | 1 | |
| ---------------------------------------------------------TCAGGACCCCATGTCGCGAG----------------------- | 20 | 1 | |
| rat | gccgtgcccatagtgcctgaACCAGCGTCACGGGGACCCtgagtgattaaaatgtccTCAGGACCCCATGTCGCGAGaaggaaaggctaagggcccagcc | ||
| **************************************************************************************************** | |||
| rat | ((...((((.((((.(((......(((.((.((((..((((((.(((......))))))))).)))).)).)))....)))....)))).))))...)). | 1.000 -43.40 |
| rat | chromosome:19:14307233:14307332:-1 | intergenic |
sblock6640 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.33/0.47 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 3 1 | 0 0 | 3 1 | 0 0 | 10 27 | 20 3 | 5arm 3arm | 1 1 | nd nd | 0.47 0.39 | 3 4 | 4 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | -----------CCUCACU------------------------------------------------------------------------------------- | 3 | novel | |||
| seed | -----------------------------------------------------------AUCUGUG------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T4S2 | T5S2 | |||
| ----------TCCTCACTCAAAGCCAACT-------------------------------------------------------------------------- | 19 | 1 | 1 | 1 | - | |
| ----------------------------------------------------------CATCTGTGTGTAACAAAT--------------------------- | 18 | - | - | - | 1 | |
| rat | cccagggcttTCCTCACTCAAAGCCAACTcctgttctcatgtgatgtgactatttttaCATCTGTGTGTAACAAATacttggtatgtaagagtaaaaacctgg | |||||
| ******************************************************************************************************* | ||||||
| rat | .(((((..(((.(((...((..(((((....((((..((((.(((((((......)))))))))))...)))).....))))).))...))).)))..))))) | 0.850 -27.00 | ||||
| rat | chromosome:20:1464542:1464644:-1 | intergenic |
sblock8044 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.32/0.54 | 19/26/0.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 20 19 | 4 15 | 5arm 3arm | 1 1 | nd nd | 0.31 0.42 | 4 8 | 3 | 1 | 11 | -1 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------GCCACAA------------------------------ | 2 | novel |
| seed | ---------------------GUGAAUC---------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------------------------------------TGCCACAATATCTTAGAAT------------------- | 19 | 2 | |
| --------------------TGTGAATCTGAGGCACACCTTGCCCT---------------------------------------------------------------- | 26 | 1 | |
| rat | ttagaacatgggccgttctaTGTGAATCTGAGGCACACCTTGCCCTactagactaagtaggagggcatcaagTGCCACAATATCTTAGAATaaagaacagcaccttctgg | ||
| ************************************************************************************************************** | |||
| rat | .(((((...((((.(((((.(((...((((((((((....((((((.(((.......))).))))))....)))))........)))))))).))))).)).))))))). | 0.900 -34.20 |
| rat | chromosome:3:76964480:76964589:1 | intergenic |
sblock8708 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.58/0.67 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 12 26 | 15 5 | 5arm 3arm | 1 2 | nd nd | 0.42 0.39 | 4 4 | 2 | 2 | -11 | -12 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------CCAAGGC------------------------------------ | 1 | novel | |
| seed | -------------CCCUAAC------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S1 | |||
| ------------TCCCTAACTTCCCCACCCT------------------------------------------------------------------- | 19 | 1 | - | |
| ------------------------------------------------------GCCAAGGCGGGAGGGAAA-------------------------- | 18 | - | 1 | |
| rat | gtctacgccagcTCCCTAACTTCCCCACCCTcccagcagcaggaccacaggtctGCCAAGGCGGGAGGGAAAgaggtttccacagcatgtctacgaca | |||
| ************************************************************************************************** | ||||
| rat | (((((.((..(((....((((((....(((((((.((.(((.((((...)))))))....)))))))))...)))))).....)))..)).)).))). | 0.970 -35.70 | ||
| rat | chromosome:4:159319733:159319830:-1 | intergenic |
novel_lenNOK_shortStem_mirtron_bulgeHIGH (9 loci)
block82531 [novel_lenNOK_shortStem_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.042 | no | no | 0.58/0.60 | 19/20/0.67 | 0.0 | 0.3 | 3 | 0 | 1 | 0 | 1 | 11 | 5arm | 1 | 1 | 0.30 | 4 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --UGGGCAU---------------------------------------------------------------- | 3 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| -GTGGGCATGCAGCAGTAGAC---------------------------------------------------- | 20 | 2 | |
| -GTGGGCATGCAGCAGTAGA----------------------------------------------------- | 19 | 1 | |
| rat | gGTGGGCATGCAGCAGTAGACcagcaggaagggtgacctagatgctgagacactctcatctgcagctccactg | ||
| ************************************************************************* | |||
| >>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016759 ENSRNOG00000012240 Supt6h | ||
| rat | (((((((.(((((.(((....(((((...(((....)))...)))))....))).....))))))).))))). | 0.480 -30.00 |
| rat | chromosome:10:64407871:64407943:1 | Same_strand|Boundary_coding|ENSRNOT00000016759|ENSRNOG00000012240 ## ENSRNOG00000012240|protein_coding|Supt6h|Supt6h protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q4G018] |
block197386 [novel_lenNOK_shortStem_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.274 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 23 | 5arm | 1 | 1 | 0.22 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -GUCUGAC-------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| TGTCTGACTCTTGTTTCA---------------------------------------------------------------------- | 18 | 1 | |
| rat | TGTCTGACTCTTGTTTCAggacctgaagcctaagagcctggacgtccggcaagaggagctaggggccatggttgacaaggagatggca | ||
| **************************************************************************************** | |||
| ++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000001461 ENSRNOG00000001091 Hip1r | ||
| ++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000034264 ENSRNOG00000001091 Hip1r | ||
| rat | .(((....((((((((((((.((((...(((....(((.((....)))))...)))...))))..)).)))..)))))))....))). | 0.980 -27.50 |
| rat | chromosome:12:33717334:33717421:-1 | Same_strand|Intronic_coding|ENSRNOT00000034264|ENSRNOG00000001091 ## ENSRNOG00000001091|protein_coding|Hip1r|Huntingtin interacting protein 1 related (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q99PW9] |
block645218 [novel_lenNOK_shortStem_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.379 | no | no | 0.89/0.89 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 21 | 5arm | 1 | 4 | 0.28 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -GAGCGCC---------------------------------------------------------------------------------- | 1 | miR-339 |
| len | cloning frequencies | ||
| T4S2 | |||
| AGAGCGCCCCCCCGCCCC------------------------------------------------------------------------ | 18 | 1 | |
| rat | AGAGCGCCCCCCCGCCCCgactccccaccctcggagtgcatccagcctccgcacgcaccgggcagcttggcaggcagccgggtcccctct | ||
| ****************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000050126 ENSRNOG00000011423 Pitx1 | ||
| >>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000015307 ENSRNOG00000011423 Pitx1 | ||
| rat | ((((.((((....((((((((((((......(((((.((.....)))))))........))).)).))))..)))....))))...)))) | 0.970 -30.24 |
| rat | chromosome:17:14834607:14834696:1 | Same_strand|Intronic_coding|ENSRNOT00000015307|ENSRNOG00000011423 ## ENSRNOG00000011423|protein_coding|Pitx1|Pituitary homeobox 1. [Source:UniProtKB/Swiss-Prot;Acc:Q99NA7] |
block1148335 [novel_lenNOK_shortStem_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.058 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 23 | 5arm | 1 | 3 | 0.28 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -AGCAGCA------------------------------------------------------------------------------------------------- | 1 | miR-15b/16/195/322/497 |
| len | cloning frequencies | ||
| T1S1 | |||
| AAGCAGCACAGGTATTTT--------------------------------------------------------------------------------------- | 18 | 1 | |
| rat | AAGCAGCACAGGTATTTTccctctattggcttcaatgtgatataaacattatacagttacattgctagcgataaagcaggaaaaaaaaaacctccagaaatgttt | ||
| ********************************************************************************************************* | |||
| >>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000060146 ENSRNOG00000013336 RGD1309487 | ||
| >>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000017893 ENSRNOG00000013336 RGD1309487 | ||
| rat | (((((....((((.((((((((.((((.(((.(((((((((..............)))))))))..))))))).))..)))))).....)))).......))))) | 0.840 -19.84 |
| rat | chromosome:2:57696035:57696139:-1 | Same_strand|Intronic_coding|ENSRNOT00000060146|ENSRNOG00000013336 ## ENSRNOG00000013336|protein_coding|RGD1309487|WD repeat-containing protein 70. [Source:UniProtKB/Swiss-Prot;Acc:Q5EB92] |
block1476911 [novel_lenNOK_shortStem_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.057 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 12 | 5arm | 1 | 2 | 0.28 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --AAGGUGU------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| -TAAGGTGTTAGGTTTTGC-------------------------------------------- | 18 | 1 | |
| rat | gTAAGGTGTTAGGTTTTGCttccttgtagacagtgggtaaagagagggagaaatatattttat | ||
| *************************************************************** | |||
| >>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041494 ENSRNOG00000022178 Dcdc5 | ||
| rat | (((((((((....((((.(((((((....((.....)).))).)))).))))..))))))))) | 1.000 -12.30 |
| rat | chromosome:3:91872591:91872653:1 | Same_strand|Boundary_non-coding|ENSRNOT00000033597|ENSRNOG00000022178 ## Same_strand|Intronic_coding|ENSRNOT00000041494|ENSRNOG00000022178 ## ENSRNOG00000022178|protein_coding|Dcdc5|doublecortin domain containing 5 Gene [Source:MGI (curated);Acc:Dcdc5-003] |
block1871808 [novel_lenNOK_shortStem_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.453 | no | no | 0.37/0.37 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 9 | 3arm | 1 | 0 | 0.26 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------CUCUUGG------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| ----------------------------------------TCTCTTGGTTTCCTTTAAG-- | 19 | 1 | |
| rat | ttcttgaggccagtggtacaggcagtctctagaattcacaTCTCTTGGTTTCCTTTAAGaa | ||
| ************************************************************* | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000047791 ENSRNOG00000008841 Orc1l | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000012492 ENSRNOG00000008841 Orc1l | ||
| rat | .((((((((((((.((.........((....))........)).))))))))....)))). | 0.510 -10.23 |
| rat | chromosome:5:129900253:129900313:1 | Same_strand|Intronic_coding|ENSRNOT00000012492|ENSRNOG00000008841 ## ENSRNOG00000008841|protein_coding|Orc1l|origin recognition complex, subunit 1 [Source:RefSeq_peptide;Acc:NP_808792] |
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