other hairpins
novel_lenNOK_shortStem_mirtron_bulgeHIGH (9 loci)
block1954583 [novel_lenNOK_shortStem_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.056 | no | no | 0.32/0.32 | 25/25/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 9 | 3arm | 1 | 2 | 0.29 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------CUAACUC----------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------------------------------------------ACTAACTCACTCTCTTTCTAATTCT | 25 | 1 | |
| rat | ggggtgtaggggagggagtctcctggttgcttggaaacagcttcttACTAACTCACTCTCTTTCTAATTCT | ||
| *********************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000052408 ENSRNOG00000005540 NP_001100207.1 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000007529 ENSRNOG00000005540 NP_001100207.1 | ||
| rat | (((((...((..(((((((....((((.((.((....)))).....))))....)))))))..)).))))) | 1.000 -21.90 |
| rat | chromosome:6:92172581:92172651:-1 | Same_strand|Intronic_coding|ENSRNOT00000007529|ENSRNOG00000005540 ## ENSRNOG00000005540|protein_coding|NP_001100207.1|ninein [Source:RefSeq_peptide;Acc:NP_001100207] |
block1984832 [novel_lenNOK_shortStem_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.507 | no | no | 0.42/0.48 | 18/23/0.20 | 0.6 | 1.2 | 5 | 0 | 1 | 0 | 1 | 9 | 3arm | 1 | 1 | 0.26 | 4 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------CACACCU------------------ | 3 | novel |
| seed | --------------------------------------------------ACACCUC----------------- | 1 | novel |
| seed | ---------------------------------------------------CACCUCA---------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ------------------------------------------------TCACACCTCAACCTTTCAT------- | 19 | 3 | |
| -------------------------------------------------CACACCTCAACCTTTCAT------- | 18 | 1 | |
| --------------------------------------------------ACACCTCAACCTTTCATTCCAGC- | 23 | 1 | |
| rat | ggcatggcccagagggagcagtggagtgggtcttaagccagcctgagcTCACACCTCAACCTTTCATTCCAGCt | ||
| ************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041706 ENSRNOG00000034190 LOC678701 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000006888 ENSRNOG00000034190 LOC678701 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040702 ENSRNOG00000034190 LOC678701 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000048378 ENSRNOG00000034190 LOC678701 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000007140 ENSRNOG00000034190 LOC678701 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000056845 ENSRNOG00000034190 LOC678701 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000047415 ENSRNOG00000034190 LOC678701 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000056844 ENSRNOG00000034190 LOC678701 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000052420 ENSRNOG00000034190 LOC678701 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> | ENSRNOT00000056843 ENSRNOG00000034190 LOC678701 | ||
| rat | (((.(((...((((((((..((((((((((.((......)))))..)))).))))))..)))))....)))))) | 0.980 -20.30 |
| rat | chromosome:6:138443847:138443920:-1 | Same_strand|Boundary_coding|ENSRNOT00000048378|ENSRNOG00000034190 ## Same_strand|Intronic_coding|ENSRNOT00000041706|ENSRNOG00000034190 ## ENSRNOG00000034190|protein_coding|LOC678701|LOC366747 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q5I0L9] |
block2182501 [novel_lenNOK_shortStem_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.050 | no | no | 0.74/0.74 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 21 | 5arm | 1 | 1 | 0.26 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --UGCGCGG------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| -GTGCGCGGAGGTGGGGATG------------------------------------------------------------------------- | 19 | 1 | |
| rat | gGTGCGCGGAGGTGGGGATGgggggcgctgctgggggcgggagttcctgcctactgactctgccttgattccccctgctccccgcagccacca | ||
| ********************************************************************************************* | |||
| >>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> | ENSRNOT00000027847 ENSRNOG00000020501 NP_001101543.1 | ||
| rat | ((((.((....((((((((((((((((..((.(((((((((....))))))......))).))..))...))))))).))))))).)))))). | 0.870 -48.50 |
| rat | chromosome:7:9928694:9928786:1 | Same_strand|Boundary_coding|ENSRNOT00000027847|ENSRNOG00000020501 ## ENSRNOG00000020501|protein_coding|NP_001101543.1|tight junction protein 3 [Source:RefSeq_peptide;Acc:NP_001101543] |
novel_mirtron_randfoldOK_bulgeHIGH (9 loci)
block25362 [novel_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 13 | 6 | 3arm | 1 | 3 | 0.29 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------ACUCCUU-------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------------------------------------------------TACTCCTTAATCCCCACCCTT------------- | 21 | 1 | |
| rat | aattgggagttgttgagaggatggggagttggagaagaagagtatgaggtcttattttTACTCCTTAATCCCCACCCTTcaggctacgattg | ||
| ******************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> | ENSRNOT00000021357 ENSRNOG00000015674 NP_001099266.1 | ||
| rat | (((((..(((..((((.(((.((((((...((((...(((((((........))))))).))))....)))))).)))))))))).))))). | 1.000 -30.90 |
| rat | chromosome:10:56725987:56726078:-1 | Same_strand|Intronic_coding|ENSRNOT00000021357|ENSRNOG00000015674 ## ENSRNOG00000015674|protein_coding|NP_001099266.1|centaurin, beta 1 [Source:RefSeq_peptide;Acc:NP_001099266] |
block1312051 [novel_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.41/0.41 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | 11 | 3arm | 1 | 1 | 0.23 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------GUUCCCA------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ------------------------------------------------------------AGTTCCCATCCTTTATCCTAGT---------- | 22 | 1 | |
| rat | agtcaggtatcagggagataagggattgggaccgggtatgaaaggaggtcctaatgcatcAGTTCCCATCCTTTATCCTAGTggccttcgac | ||
| ******************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>> | ENSRNOT00000030622 ENSRNOG00000022373 Dennd4b | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>> | ENSRNOT00000049810 ENSRNOG00000022373 Dennd4b | ||
| rat | .(((((((.....((.((((((((((.(((((.((((((...(((....))).)))).)).))))).))))))))))))....))))..))) | 1.000 -34.20 |
| rat | chromosome:2:182522464:182522555:1 | Same_strand|Boundary_coding|ENSRNOT00000030622|ENSRNOG00000022373 ## ENSRNOG00000022373|protein_coding|Dennd4b|DENN/MADD domain containing 4B Gene [Source:MGI Symbol;Acc:MGI:2446201] |
block1502979 [novel_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 18 | 6 | 3arm | 2 | 1 | 0.20 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------UUGAUCU------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| ------------------------------------------------------------TTTGATCTCTGGCTTCCACA------------------ | 20 | 1 | |
| rat | agtgagtaagggaagcaggaggctagggattagggacatgtaggaaaagtgattcaaatcTTTGATCTCTGGCTTCCACAgggtggccatatgctgac | ||
| ************************************************************************************************** | |||
| >>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000025612 ENSRNOG00000018755 NP_001101263.1 | ||
| rat | .((.((((..((..((.(((((((((((((((((((..((..............))..))))))))))))))))))).....))..))...)))).)) | 0.970 -35.94 |
| rat | chromosome:3:146050547:146050644:1 | Same_strand|Intronic_coding|ENSRNOT00000025612|ENSRNOG00000018755 ## ENSRNOG00000018755|protein_coding|NP_001101263.1|acyl-CoA synthetase short-chain family member 2 [Source:RefSeq_peptide;Acc:NP_001101263] |
block1568098 [novel_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.40/0.40 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 2 | 0 | 37 | 1 | 3arm | 1 | 0 | 0.25 | 5 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------CUGCUCU------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| -----------------------------------------------------------TCTGCTCTTGATTTTCCTAG------------------------------------- | 20 | 1 | 1 | |
| rat | tgggatgaaatcaagggtgagggcaggggtgggagtcaggagcaggaaagggctggaatTCTGCTCTTGATTTTCCTAGacaaattcctgccctctgtgccgccatgagctgccca | |||
| ******************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000016699 ENSRNOG00000012035 MGC94464 | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000016748 ENSRNOG00000012035 MGC94464 | |||
| rat | .(((......(((..((((((((((((((((((((((((((((((((...........)))))))))))))))))........))))))))))))......))).)))....))). | 0.950 -50.60 | ||
| rat | chromosome:4:105665796:105665911:-1 | Same_strand|Intronic_coding|ENSRNOT00000016748|ENSRNOG00000012035 ## ENSRNOG00000012035|protein_coding|MGC94464|RING finger protein 181. [Source:UniProtKB/Swiss-Prot;Acc:Q6AXU4] |
block1615430 [novel_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 9 | 6 | 3arm | 1 | 2 | 0.30 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------GAGCUCC--------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| --------------------------------------------------------TGAGCTCCCTCTCTCTTCCT--------- | 20 | 1 | |
| rat | agcagagctccaggaagccagggctgttctacgtgggtgcttctctccctcactcaTGAGCTCCCTCTCTCTTCCTagagtctgt | ||
| ************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>> | ENSRNOT00000009439 ENSRNOG00000007131 LOC681792 | ||
| rat | .(((((.(((.((((((..((((..((((...(((((((...........))))))))))).))))....)))))).)))))))) | 1.000 -32.10 |
| rat | chromosome:4:2836322:2836406:1 | Same_strand|Intronic_coding|ENSRNOT00000009439|ENSRNOG00000007131 ## Same_strand|Boundary_non-coding|ENSRNOT00000062071|ENSRNOG00000007131 ## ENSRNOG00000007131|protein_coding|LOC681792|PAX interacting (with transcription-activation domain) protein 1 [Source:RefSeq_peptide;Acc:NP_001101314] |
block1650804 [novel_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.52/0.52 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 12 | 5arm | 1 | 0 | 0.30 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------UAACUGC------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------GTAACTGCTCCTTCTTTCCCCAG--------------------------------------------------------------------- | 23 | 1 | |
| rat | ttcctggtGTAACTGCTCCTTCTTTCCCCAGggacctctgagctgcttcctctctctgctttcctgtcacctgcagaggctggaggagccacagcaggag | ||
| **************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000010111 ENSRNOG00000007405 RGD1306967_predicted | ||
| ++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000043856 ENSRNOG00000007405 RGD1306967_predicted | ||
| rat | .(((((.(((....((((((((.(((..(((((((....((((..............))))....))).))))..)))...)))))))).))).))))). | 0.470 -38.34 |
| rat | chromosome:4:76485767:76485866:1 | Same_strand|Intronic_coding|ENSRNOT00000010111|ENSRNOG00000007405 ## ENSRNOG00000007405|protein_coding|RGD1306967_predicted| |
block1801450 [novel_mirtron_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.70/0.70 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 27 | 8 | 3arm | 1 | 0 | 0.30 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------CGAGCCU------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ----------------------------------------------------------------ACGAGCCTGTCCTCTGCCCCCAG--------------------------- | 23 | 1 | |
| rat | tcacctgggtgccttgagccatctgcctggcaaggaagggttctctgtttagcatgctggcaacACGAGCCTGTCCTCTGCCCCCAGgatgtgcctcaagtcccagatggtgga | ||
| ****************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000012301 ENSRNOG00000009217 Fbxo6b | ||
| rat | (((((((((...((((((((((((....((((((((.((((((..(((((((....)))..)))).)))))).)))).))))....))))).)).))))).))))...))))). | 0.960 -48.40 |
| rat | chromosome:5:165223792:165223905:-1 | Same_strand|Intronic_coding|ENSRNOT00000012301|ENSRNOG00000009217 ## ENSRNOG00000009217|protein_coding|Fbxo6b|F-box only protein 6 (F-box only protein 6b) (F-box/G-domain protein 2). [Source:UniProtKB/Swiss-Prot;Acc:Q923V4] |
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