other hairpins
novel_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (9 loci)
sblock10320 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.798 | no | no | 0.60/0.70 | 18/21/0.71 | 0.0 1.8 0.0 | 0.0 1.2 0.0 | 1 5 1 | 0 0 0 | 1 4 1 | 0 0 0 | 34 46 43 | -1 -17 -1 | 5arm_loop 3arm_loop 3arm | 2 2 2 | 54 34 31 | 0.35 0.52 0.35 | 4 6 6 | 7 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------CCUGCCG-------------------------------------------------------------- | 2 | novel | |||
| seed | -------------------------------------------------------CCGGGUC---------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------UGGAAGC------------------------------------------------------------------------------ | 1 | novel | |||
| seed | -----------------------------------------------------UGCCGGG------------------------------------------------------------ | 1 | novel | |||
| seed | ----------------------------------------------------------GGUCAGC------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------GCCGGGU----------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T3S1 | T3S2 | T4S2 | |||
| --------------------------------------------------GCCTGCCGGGTCAGCACCAT-------------------------------------------------- | 20 | 2 | - | - | - | |
| ---------------------------------------------------------GGGTCAGCACCATGAGCTCC------------------------------------------- | 20 | - | - | - | 1 | |
| ------------------------------------------------------GCCGGGTCAGCACCATGA------------------------------------------------ | 18 | - | - | - | 1 | |
| ----------------------------------CTGGAAGCGTTCTGTGGCCT------------------------------------------------------------------ | 20 | - | 1 | - | - | |
| ----------------------------------------------------CTGCCGGGTCAGCACCAT-------------------------------------------------- | 18 | - | 1 | - | - | |
| -----------------------------------------------------TGCCGGGTCAGCACCATGAGC---------------------------------------------- | 21 | - | - | 1 | - | |
| rat | gagcagtgtgcggcttaggagcggcgcttgaggcCTGGAAGCGTTCTGTGGCCTGCCGGGTCAGCACCATGAGCTCCattggcactggggtgagtctctccgcgccgtcttttccagctc | |||||
| ************************************************************************************************************************ | ||||||
| .......................................................................>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++ | ENSRNOT00000010753 ENSRNOG00000007851 Psma3 | |||||
| rat | ((((.....(((((...((((.(((((((.((((((((.(((....(((((((.....))))).))......))))))..))).)).))))..))).))))..)))))........)))) | 0.890 -44.82 | ||||
| rat | chromosome:6:93092125:93092244:1 | Same_strand|Boundary_non-coding|ENSRNOT00000010753|ENSRNOG00000007851 ## intergenic ## ENSRNOG00000007851|protein_coding|Psma3|proteasome (prosome, macropain) subunit, alpha type 3 (Psma3), mRNA [Source:RefSeq_dna;Acc:NM_017280] |
sblock1056 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.569 | no | no | 0.43/0.53 | 19/21/0.89 | 1.5 0.0 0.0 | 2.0 0.0 0.0 | 2 5 1 | 0 0 0 | 1 1 1 | 0 0 0 | 18 39 23 | 1 -18 -1 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.47 0.52 0.43 | 5 6 6 | 9 | 2 | -2 | 0 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------GCAACUU------------------------------------------- | 5 | novel | |
| seed | -----------------------------------------CAACUUG------------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------GCAUUUC------------------------------------ | 1 | novel | |
| seed | -------------------GCUGACG---------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------GACGUAG------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------TGCAACTTGCATTTCTTGGTG------------------------------ | 21 | - | 5 | |
| ----------------------------------------GCAACTTGCATTTCTTGGTG------------------------------ | 20 | - | 1 | |
| ------------------GGCTGACGTAGTGCTTAAC----------------------------------------------------- | 19 | - | 1 | |
| ---------------------TGACGTAGTGCTTAACCTTG------------------------------------------------- | 20 | - | 1 | |
| ----------------------------------------------TGCATTTCTTGGTGCCCAGTG----------------------- | 21 | 1 | - | |
| rat | gccttcgcctttctgcggggctgacgtagtgcttaacctTGCAACTTGCATTTCTTGGTGcccagtggccttgaacagttgctcaggggc | |||
| ****************************************************************************************** | ||||
| rat | (((((.((....((((((((((.((...(((((......(((.....)))......)))))...)))))))))..)))..))...))))) | 0.510 -25.50 | ||
| rat | chromosome:1:241526301:241526390:-1 | intergenic |
sblock2836 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.753 | no | no | 0.40/0.67 | 19/23/0.80 | 0.0 2.0 | 0.0 4.0 | 2 3 | 0 0 | 1 1 | 0 0 | 43 6 | -10 16 | 5arm_loop 3arm | 1 1 | nd nd | 0.70 0.32 | 11 4 | 5 | 1 | 0 | 0 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------ACAGGUC---------------------------------------------------------------- | 2 | novel |
| seed | ------------------------------------------------------------------------------------AGGUCCA------------------------ | 1 | novel |
| seed | -----------------------------------------------------------------------------------------CAGUCCA------------------- | 1 | novel |
| seed | -------------------------------------------------------------------------------------GGUCCAG----------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------------TACAGGTCTTAGAAAAGGGA---------------------------------------------------- | 20 | 2 | |
| ----------------------------------------------------------------------------------------CCAGTCCAGTCCTGCAGCAGC------ | 21 | 1 | |
| -----------------------------------------------------------------------------------TAGGTCCAGTCCAGTCCTG------------- | 19 | 1 | |
| ------------------------------------------------------------------------------------AGGTCCAGTCCAGTCCTGCAGCA-------- | 23 | 1 | |
| rat | ggctcatagaactctctggtcaggctgggaatgcccaaagtgtTACAGGTCTTAGAAAAGGGAtaaagaggtttggggcagcgTAGGTCCAGTCCAGTCCTGCAGCAGCtgtggt | ||
| ******************************************************************************************************************* | |||
| rat | .((.(((((......(((..(((((((((...(((.....(((..(((..(((..............)))..)))..))).....)))....))))).)))))))...))))))) | 0.750 -30.14 |
| rat | chromosome:10:92626701:92626815:1 | intergenic |
sblock3257 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.880 | no | no | 0.24/0.50 | 19/24/0.80 | 0.0 0.0 1.5 0.0 | 0.0 0.0 0.0 0.0 | 1 1 2 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 22 19 7 0 | -4 4 14 26 | 5arm_loop 3arm 3arm 3arm | 2 2 2 2 | nd nd nd nd | 0.52 0.41 0.46 0.56 | 5 5 5 5 | 5 | 3 | 9 | 12 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------GCUUUUG-------------------- | 1 | novel | ||
| seed | -----------------------GGAAGCC---------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------GGGAGUC--------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------AACCUUU----------- | 1 | novel | ||
| seed | ----------------------------------------------------------------AGAGCUU----------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T5S1 | |||
| ---------------------------------------------------------------GAGAGCTTTTGATAACCTTTTTTT------- | 24 | 1 | - | - | |
| ---------------------------------------------------------------------------TAACCTTTTTTTGATGCAC | 19 | - | - | 1 | |
| -----------------------------------------------------TGGGAGTCCAGAGAGCTTTTGA------------------- | 22 | - | - | 1 | |
| ------------------------------------------------------------------AGCTTTTGATAACCTTTTTTT------- | 21 | - | 1 | - | |
| ----------------------TGGAAGCCACAAGATGTAGCA--------------------------------------------------- | 21 | - | - | 1 | |
| rat | ctcaaggcctggccgtcttcacTGGAAGCCACAAGATGTAGCAagattggcacTGGGAGTCCAGAGAGCTTTTGATAACCTTTTTTTGATGCAC | ||||
| ********************************************************************************************** | |||||
| rat | .((((((...((..((((((.(((((..((...((.(((..........))))).))..))))).))).....)))..))...))))))..... | 0.590 -19.70 | |||
| rat | chromosome:12:27564250:27564343:-1 | intergenic |
sblock5228 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.585 | no | no | 0.52/0.68 | 19/23/0.89 | 0.5 2.0 0.0 | 0.5 2.0 0.0 | 2 6 1 | 0 0 0 | 2 6 1 | 0 0 0 | 22 33 36 | 15 -1 1 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.32 0.48 0.53 | 6 6 4 | 9 | 6 | 2 | -1 |
| reads | miRBase family seed | |||||||
| seed | -----------------------------------UGCUUAU------------------------------------------------------------------------------ | 3 | novel | |||||
| seed | ------------------------------------------------------------------GCCUCGG----------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------GCUUAUU----------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------CCGAGCG------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | -----------------------------------------UUGGUCA------------------------------------------------------------------------ | 1 | novel | |||||
| seed | ------------------------CGAGCGC----------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------GUGCUUA------------------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T2S1 | T2S2 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| ----------------------------------GTGCTTATTGGTCAGCCTCC------------------------------------------------------------------ | 20 | 1 | - | - | - | 1 | - | |
| ----------------------ACCGAGCGCGGGGTGCTTATTG---------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| ----------------------------------------ATTGGTCAGCCTCCTGCCTTC----------------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| -----------------------------------TGCTTATTGGTCAGCCTCCTG---------------------------------------------------------------- | 21 | - | - | 1 | - | - | - | |
| ---------------------------------GGTGCTTATTGGTCAGCCTCC------------------------------------------------------------------ | 21 | - | 1 | - | - | - | - | |
| -----------------------------------------------------------------AGCCTCGGGATCAGACATT------------------------------------ | 19 | - | - | 1 | - | - | - | |
| -----------------------CCGAGCGCGGGGTGCTTATTGG--------------------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | |
| ----------------------------------GTGCTTATTGGTCAGCCTCCTGC--------------------------------------------------------------- | 23 | - | - | - | 1 | - | - | |
| rat | gctccgggagctgcagccgtagACCGAGCGCGGGGTGCTTATTGGTCAGCCTCCTGCCTTCtgtgAGCCTCGGGATCAGACATTtgcactccagtgccccggcggccgcccagctggagc | |||||||
| ************************************************************************************************************************ | ||||||||
| rat | (((((...((((((.((((....(((.(((((((((((......(((....(((((.(((....)))...)))))...)))....))))))).))))..))))))).))..))))))))) | 0.720 -48.60 | ||||||
| rat | chromosome:17:92866449:92866568:-1 | intergenic |
sblock684 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.044 | no | no | 0.35/0.59 | 21/26/0.89 | 1.5 0.0 0.0 0.2 0.0 | 3.5 0.0 0.0 0.0 0.0 | 2 1 1 4 1 | 0 0 0 0 0 | 2 1 1 2 1 | 0 0 0 0 0 | 22 40 50 40 0 | 0 -12 -20 -2 38 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.31 0.57 0.62 0.32 0.59 | 4 7 7 3 11 | 9 | 3 | -2 | -5 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------AACACUG------------------------------------------------------- | 3 | miR-141/200a | ||
| seed | -----------------------------------------CCGAUUG----------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------------------------------------ACUUCAG--------------- | 1 | novel | ||
| seed | --------------------------GAAAUUG-------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------GCUGAAA----------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------AAGAGUA------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------ACACUGA------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------TAACACTGAGGGCACTCCAGGAA---------------------------------------- | 23 | - | 1 | 2 | |
| --------------------------------------------------TAAGAGTAACACTGAGGGCAC------------------------------------------------ | 21 | - | - | 1 | |
| ------------------------------------------------------------------------------------------------TACTTCAGACTTGAAAACAACCT | 23 | - | - | 1 | |
| ----------------------GGCTGAAATTGCTGGGACTCCG--------------------------------------------------------------------------- | 22 | - | - | 1 | |
| ----------------------------------------TCCGATTGTGTAAGAGTAACACT-------------------------------------------------------- | 23 | - | - | 1 | |
| -------------------------TGAAATTGCTGGGACTCCGATTGTGT-------------------------------------------------------------------- | 26 | 1 | - | - | |
| ---------------------------------------------------------AACACTGAGGGCACTCCAGGAA---------------------------------------- | 22 | - | - | 1 | |
| rat | aagtcctaagtctgccacttaaGGCTGAAATTGCTGGGACTCCGATTGTGTAAGAGTAACACTGAGGGCACTCCAGGAAtttcccatttgaggcacTACTTCAGACTTGAAAACAACCT | ||||
| *********************************************************************************************************************** | |||||
| rat | (((((..((((.((((..(((((...((((((.(((((..(((....((((.......))))...)))...))))).))))))...)))))))))..))))..)))))........... | 0.970 -32.90 | |||
| rat | chromosome:1:124840538:124840656:-1 | intergenic |
sblock712 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.279 | no | no | 0.38/0.53 | 19/25/0.71 | 0.0 1.2 0.0 0.0 | 0.0 3.5 0.0 0.0 | 1 4 1 1 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 8 14 34 17 | 13 -3 -15 3 | 5arm 5arm_loop 5arm_loop_3arm 3arm | 2 2 2 2 | nd nd nd nd | 0.74 0.38 0.33 0.45 | 12 4 5 5 | 7 | 3 | 5 | 0 |
| reads | miRBase family seed | ||||
| seed | ---------------CUCCUAG--------------------------------------------------------------- | 3 | novel | ||
| seed | -----------------------------------GUUGUCU------------------------------------------- | 1 | novel | ||
| seed | ---------GUCUCCC--------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------CGAAGUA----------------------------- | 1 | novel | ||
| seed | --------------------AGCACUU---------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S2 | T5S1 | |||
| -------------------TAGCACTTTATTCTCTGTTGTCTC------------------------------------------ | 24 | - | - | 1 | |
| --------------CCTCCTAGCACTTTATTCTCTGTTG---------------------------------------------- | 25 | - | - | 1 | |
| ----------------------------------TGTTGTCTCAGGCAGCGAAGT------------------------------ | 21 | - | - | 1 | |
| --------------CCTCCTAGCACTTTATTCTCTGT------------------------------------------------ | 23 | - | 1 | - | |
| --------------CCTCCTAGCACTTTATTCTCT-------------------------------------------------- | 21 | - | - | 1 | |
| --------TGTCTCCCTCCTAGCACTT---------------------------------------------------------- | 19 | 1 | - | - | |
| ------------------------------------------------GCGAAGTATTTGGTGTCTCT----------------- | 20 | - | - | 1 | |
| rat | aggcctcaTGTCTCCCTCCTAGCACTTTATTCTCTGTTGTCTCAGGCAGCGAAGTATTTGGTGTCTCTtccccacttcccctgcc | ||||
| ************************************************************************************* | |||||
| rat | .(((.................(((((..((.((.((((((.....)))))).)).))..)))))..................))) | 0.820 -15.25 | |||
| rat | chromosome:1:128999738:128999822:-1 | intergenic |
sblock7471 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.422 | no | no | 0.52/0.59 | 19/23/0.80 | 4.3 0.0 0.0 | 2.0 0.0 0.0 | 3 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 15 34 14 | 1 -11 -2 | 5arm 5arm_loop_3arm 3arm_loop | 1 1 1 | nd nd nd | 0.40 0.55 0.41 | 4 4 4 | 5 | 2 | 0 | -2 |
| reads | miRBase family seed | |||
| seed | -----------------------GGUCACA--------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------GUCAUGC--------------------------------------- | 1 | novel | |
| seed | ----------------------UGGUCAC---------------------------------------------------- | 1 | novel | |
| seed | ----------------GGAAAGU---------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------GGGUUUA---------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| ---------------------GTGGTCACAGGAAGGTCAT----------------------------------------- | 19 | 1 | - | |
| ---------------AGGAAAGTGGTCACAGGAAGGTC------------------------------------------- | 23 | 1 | - | |
| ---------------------------------------------TGGGTTTATGCCGCTTCCAGCC-------------- | 22 | 1 | - | |
| ----------------------------------GGTCATGCCCGTGGGTTTAT--------------------------- | 20 | - | 1 | |
| ----------------------TGGTCACAGGAAGGTCATGC--------------------------------------- | 20 | - | 1 | |
| rat | ctccgtttatttagaAGGAAAGTGGTCACAGGAAGGTCATGCCCGTGGGTTTATGCCGCTTCCAGCCatgggcctttgggg | |||
| ********************************************************************************* | ||||
| ........................................................................>>>>>>>>>>>>>>>>>>> | ENSRNOT00000025534 ENSRNOG00000018899 C5 | |||
| rat | ((((.........(((((...(((((....(((.(((...(((....)))....)))...))).)))))...))))))))) | 0.890 -22.90 | ||
| rat | chromosome:3:14102731:14102811:-1 | intergenic |
sblock9461 [novel_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.081 | no | no | 0.30/0.48 | 18/25/0.88 | 2.7 0.0 0.0 0.0 | 2.2 0.0 0.0 0.0 | 6 5 1 4 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 20 36 28 4 | -10 -19 0 22 | 5arm_loop_3arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.50 0.65 0.43 0.52 | 4 6 5 9 | 17 | 1 | 0 | -21 |
| reads | miRBase family seed | ||
| seed | -------------------------------------AACUCAA------------------------------------------------ | 5 | novel |
| seed | ------------------------------------------------------------------AGGCCAA------------------- | 4 | novel |
| seed | ---------------------GGGCCUU---------------------------------------------------------------- | 3 | novel |
| seed | ----------------------------ACAUUAA--------------------------------------------------------- | 2 | novel |
| seed | --------------------------------------------GGUAUGC----------------------------------------- | 1 | novel |
| seed | -----------------------GCCUUAC-------------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------------------------------------GCCAAGU----------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------TAACTCAAGGTATGCTTCAG------------------------------------ | 20 | 5 | |
| -----------------------------------------------------------------TAGGCCAAGTTACAAACACAAAA---- | 23 | 4 | |
| ---------------------------TACATTAACTAACTCAAGGT--------------------------------------------- | 20 | 2 | |
| --------------------TGGGCCTTACATTAACTAACTCA------------------------------------------------- | 23 | 2 | |
| --------------------TGGGCCTTACATTAACTA------------------------------------------------------ | 18 | 1 | |
| -------------------------------------------------------------------GGCCAAGTTACAAACACAAAATAGA | 25 | 1 | |
| ----------------------GGCCTTACATTAACTAACTCA------------------------------------------------- | 21 | 1 | |
| -------------------------------------------AGGTATGCTTCAGCCTCAGAT---------------------------- | 21 | 1 | |
| rat | attggtatttggactgacttTGGGCCTTACATTAACTAACTCAAGGTATGCTTCAGcctcagattTAGGCCAAGTTACAAACACAAAAtaga | ||
| ******************************************************************************************** | |||
| rat | .(((..((((((.((((.(((((((....(((...((......))..))).....))).)))).)))).))))))..)))............ | 0.980 -19.60 |
| rat | chromosome:5:114565725:114565816:-1 | intergenic |
novel_multiarm_DicerNOK_loopOverlap_bulgeHIGH (9 loci)
sblock12641 [novel_multiarm_DicerNOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.011 | no | no | 0.15/0.35 | 20/20/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 28 37 | 0 -3 | 5arm 3arm_loop | 1 2 | nd nd | 0.25 0.30 | 4 4 | 2 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------CUUAAUA------------------------------------------------- | 1 | novel | |
| seed | -----------------------------GUGGUAC---------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------------------------TGTGGTACAAAGTTTTGTTG---------------------------------------------------------- | 20 | 1 | - | |
| -------------------------------------------------TCTTAATAAAATATAATACC------------------------------------- | 20 | - | 1 | |
| rat | attggccactgaagtaagatgttgtctgTGTGGTACAAAGTTTTGTTGtTCTTAATAAAATATAATACCacccttcattcagataggcttctctgttttggctaat | |||
| ********************************************************************************************************** | ||||
| rat | ((((((((....((..(((.((((((((.((((((....(((((((((....)))))))))....))))))........)))))).)).)))))....)))))))) | 0.620 -27.90 | ||
| rat | chromosome:X:17677553:17677658:-1 | intergenic |
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