other hairpins
novel_multiarm_DicerNOK_loopOverlap_randfoldOK (9 loci)
sblock11835 [novel_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.38/0.47 | 19/23/0.71 | 0.0 1.0 0.0 1.0 | 0.0 0.3 0.0 2.0 | 1 3 1 2 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 28 34 39 12 | 4 -7 3 24 | 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.21 0.35 0.21 0.62 | 2 5 2 6 | 7 | 2 | -1 | -2 |
| reads | miRBase family seed | |||
| seed | --------------------------------------GGCAUUU------------------------------------------------------------------------ | 2 | novel | |
| seed | ------------------------------------------------------------ACAGUUU-------------------------------------------------- | 1 | novel | |
| seed | -----------------------------ACCACUA--------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------GUGCUGU----------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------------------GCUGUUU--------------------------- | 1 | novel | |
| seed | -----------------------------------ACUGGCA--------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------------TGGCATTTGTAATGAGACACA----------------------------------------------------------- | 21 | 2 | - | |
| --------------------------------------------------------------------------------TGTGCTGTTTCTTCCAAAGAA---------------- | 21 | 1 | - | |
| ----------------------------------------------------------------------------------TGCTGTTTCTTCCAAAGAAGACA------------ | 23 | 1 | - | |
| -----------------------------------------------------------TACAGTTTGTCAGCTGTGG--------------------------------------- | 19 | 1 | - | |
| ----------------------------------TACTGGCATTTGTAATGAGACAC------------------------------------------------------------ | 23 | 1 | - | |
| ----------------------------GACCACTACTGGCATTTGT---------------------------------------------------------------------- | 19 | - | 1 | |
| rat | agacttttgaaggtgagagggactgcaaGACCACTACTGGCATTTGTAATGAGACACAaTACAGTTTGTCAGCTGTGGctTGTGCTGTTTCTTCCAAAGAAGACAttggaaagtctc | |||
| ********************************************************************************************************************* | ||||
| rat | ((((((((.((..((..((..((.(((((.((((..((((((.(((((.((.....)).)))))..))))))..)))))))))...))..))..)).........)).)))))))). | 0.940 -40.40 | ||
| rat | chromosome:8:72083653:72083769:-1 | intergenic |
sblock1889 [novel_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.50/0.50 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 3 | 0 0 | 1 1 | 0 0 | 31 35 | 6 -3 | 5arm 3arm_loop | 1 1 | nd nd | 0.27 0.25 | 4 2 | 4 | 1 | 0 | -8 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------AUGACAU----------------------------------------------- | 3 | miR-489 |
| seed | --------------------------------UGACAGU------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------------------------CATGACATCATCTCCCCAAG----------------------------------- | 20 | 3 | |
| -------------------------------CTGACAGTCAGAGTGAAGGAGA---------------------------------------------------------------- | 22 | 1 | |
| rat | agagagcccctgccacttcctctccatgtttCTGACAGTCAGAGTGAAGGAGAtgagtttttCATGACATCATCTCCCCAAGgcctgtcagggtggagcaagagaaaggtggccttc | ||
| ********************************************************************************************************************* | |||
| rat | .(((.((((((....(((...((((((...((((((((((....((..(((((((((((......))).)))))))).)).))).)))))))))))))...)))..))).)))))). | 0.960 -44.20 |
| rat | chromosome:1:128258733:128258849:1 | intergenic |
sblock2837 [novel_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.41/0.68 | 19/24/0.71 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 2 2 1 1 1 | 0 0 0 0 0 | 2 1 1 1 1 | 0 0 0 0 0 | 0 20 32 31 23 | 28 11 -6 2 10 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 2 2 2 2 2 | nd nd nd nd nd | 0.27 0.26 0.29 0.27 0.27 | 6 3 6 3 2 | 7 | 3 | -11 | -8 |
| reads | miRBase family seed | ||||
| seed | ---------------------AUGCUCU----------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -GAGAUUU------------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------GCCGGUU----------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------CCGCAUG------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------GGCAUGG--------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| --------------------CATGCTCTGTCTTGCCGGT------------------------------------------------------------------------ | 19 | - | - | 2 | |
| TGAGATTTCCAGGGTTTGAACA----------------------------------------------------------------------------------------- | 22 | 1 | - | 1 | |
| ----------------------------------------------------------TGGCATGGTCCGCATGGCCCAC------------------------------- | 22 | - | - | 1 | |
| ------------------------------------------------------------------TCCGCATGGCCCACAGACGTGT----------------------- | 22 | - | - | 1 | |
| --------------------------------TGCCGGTTCCATGCCAATTCCTCT------------------------------------------------------- | 24 | - | 1 | - | |
| rat | TGAGATTTCCAGGGTTTGAACATGCTCTGTCTTGCCGGTTCCATGCCAATTCCTCTgtTGGCATGGTCCGCATGGCCCACAGACGTGTatccagaaccacttcaggctgga | ||||
| *************************************************************************************************************** | |||||
| rat | .......(((((((((((((((((.(((((...((((((.((((((((((......))))))))))...)).))))..)))))))))).))..)))))........))))) | 0.810 -41.40 | |||
| rat | chromosome:10:92627304:92627414:1 | intergenic |
sblock3423 [novel_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.35/0.37 | 19/23/0.75 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 34 45 11 | 1 -9 18 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.20 0.53 0.26 | 3 7 3 | 4 | 1 | 16 | 19 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------GUGAAAC-------------------------- | 2 | novel |
| seed | -----------------------------------ACAAAUG------------------------------------------------------------------------ | 1 | novel |
| seed | ----------------------------------------------CCUUUUC------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------------------------------------------TGTGAAACATTCATACATGTCAG----------- | 23 | 2 | |
| ----------------------------------TACAAATGGCATCCTTTTCT------------------------------------------------------------ | 20 | 1 | |
| ---------------------------------------------TCCTTTTCTAATGCTTCTG-------------------------------------------------- | 19 | 1 | |
| rat | ggaggctgtcgttgcaagtacgtttatcttgtggTACAAATGGCATCCTTTTCTAATGCTTCTGgtcaggtgccgttttaTGTGAAACATTCATACATGTCAGcgatgcttccc | ||
| ****************************************************************************************************************** | |||
| rat | ((((((.(((((((.....((((.(((..(((..(((((((((((.(((...(((.......)))..))))))))))...))))..)))...))).))))))))))))))))). | 0.850 -36.40 |
| rat | chromosome:12:5621917:5622030:1 | intergenic |
sblock9113 [novel_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.56/0.61 | 18/25/0.78 | 0.2 0.0 | 0.9 0.0 | 8 1 | 0 0 | 6 1 | 0 0 | 34 13 | -19 0 | 5arm_loop_3arm 3arm | 2 2 | nd nd | 0.70 0.16 | 16 2 | 9 | 6 | 0 | 21 |
| reads | miRBase family seed | |||||||
| seed | -----------------------------------CCAACUU-------------------------------------------------- | 6 | novel | |||||
| seed | ------------------------------------CAACUUC------------------------------------------------- | 2 | novel | |||||
| seed | -------------------------------------------------------GGCUCAC------------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T4S2 | T5S1 | |||
| -----------------------------------CCAACTTCATCTCCCTCCCTG------------------------------------ | 21 | - | - | - | - | - | 2 | |
| ----------------------------------GCCAACTTCATCTCCCTCCCTG------------------------------------ | 22 | 2 | - | - | - | - | - | |
| ----------------------------------GCCAACTTCATCTCCCTCCCTGG----------------------------------- | 23 | - | 1 | - | 1 | - | - | |
| ------------------------------------------------------TGGCTCACCACGCCTCATCTCATGT------------- | 25 | - | - | - | - | - | 1 | |
| ----------------------------------GCCAACTTCATCTCCCTC---------------------------------------- | 18 | - | - | - | - | 1 | - | |
| ----------------------------------GCCAACTTCATCTCCCTCCCT------------------------------------- | 21 | - | - | 1 | - | - | - | |
| rat | aggagccaccagcaggagatgcagggtcgcttggGCCAACTTCATCTCCCTCCCTGGCTCACCACGCCTCATCTCATGTtggcagactctcc | |||||||
| ******************************************************************************************** | ||||||||
| rat | .((((...((((((.((((((.(((((....(((((((................)))))))..)).))))))))).))))))......)))) | 0.980 -32.99 | ||||||
| rat | chromosome:4:164266524:164266615:1 | intergenic |
sblock9721 [novel_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.60/0.65 | 18/20/0.80 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 2 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 2 34 0 | 18 -14 33 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.05 0.30 0.29 | 1 5 5 | 5 | 2 | 9 | 2 |
| reads | miRBase family seed | |||
| seed | -----------------------------------GCAGCUU------------------------------------------------------ | 2 | novel | |
| seed | ---UUCCAGG-------------------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------------------------------------------------------------------CCCUUGG---------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S2 | |||
| ----------------------------------AGCAGCTTCGGGCTCTTCAG------------------------------------------ | 20 | - | 2 | |
| --TTTCCAGGGGCGGAGCTAGC-------------------------------------------------------------------------- | 20 | - | 2 | |
| ------------------------------------------------------------------------------CCCCTTGGAAACCGTGTG | 18 | 1 | - | |
| rat | ggTTTCCAGGGGCGGAGCTAGCgcaggcgcctgaAGCAGCTTCGGGCTCTTCAGgctccagacgctgtcctgctctccCCCCTTGGAAACCGTGTG | |||
| ************************************************************************************************ | ||||
| rat | ((((((((((((.((((((((((..((.((((((((.(((.....))))))))))).))...)))))....)))))...))))))))))))..... | 0.810 -55.10 | ||
| rat | chromosome:5:75933893:75933988:1 | intergenic |
sblock9734 [novel_multiarm_DicerNOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.33/0.57 | 19/24/0.80 | 0.0 0.0 0.0 | 1.0 0.0 0.0 | 3 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 0 37 21 | 35 -2 4 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.29 0.38 0.21 | 2 3 2 | 5 | 2 | 5 | 9 |
| reads | miRBase family seed | |||
| seed | -GCCACCA----------------------------------------------------------------------------------------------------------- | 3 | novel | |
| seed | -----------------------------------------------------------------------AUGCUCA------------------------------------- | 1 | novel | |
| seed | --------------------------------------UGCUAUU---------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| TGCCACCAATGGCCCTTTT------------------------------------------------------------------------------------------------ | 19 | - | 1 | |
| TGCCACCAATGGCCCTTTTGG---------------------------------------------------------------------------------------------- | 21 | - | 1 | |
| TGCCACCAATGGCCCTTTTG----------------------------------------------------------------------------------------------- | 20 | 1 | - | |
| -------------------------------------GTGCTATTTAAGTTTAGGTTC--------------------------------------------------------- | 21 | - | 1 | |
| ----------------------------------------------------------------------CATGCTCAAAAGCTCCTCCCATTG--------------------- | 24 | - | 1 | |
| rat | TGCCACCAATGGCCCTTTTGGccctgcctcagtggggGTGCTATTTAAGTTTAGGTTCaaaatgtcacctCATGCTCAAAAGCTCCTCCCATTGcagggcttaaggagctgtgtg | |||
| ******************************************************************************************************************* | ||||
| rat | ...(((..(((((((((..((((((((...((((((((.(((.(((.(((..((((..........))))...))).)))))).)).)))))))))))))).)))).)))))))) | 0.990 -46.30 | ||
| rat | chromosome:5:79246157:79246271:1 | intergenic |
novel_shortStem_5varHIGH_loopOverlap (9 loci)
block204043 [novel_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.032 | no | no | 0.65/0.68 | 20/22/1.00 | 1.7 | 2.7 | 3 | 0 | 3 | 0 | 0 | -1 | 5arm_loop | 2 | nd | 0.23 | 3 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -GCCCUUC---------------------------------------------------------- | 2 | novel | ||
| seed | ------UCACCCC----------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S2 | T5S1 | T5S2 | |||
| -----TTCACCCCTCCTCACCCGGTC---------------------------------------- | 21 | - | - | 1 | |
| TGCCCTTCACCCCTCCTCAC---------------------------------------------- | 20 | 1 | - | - | |
| TGCCCTTCACCCCTCCTCACCC-------------------------------------------- | 22 | - | 1 | - | |
| rat | TGCCCTTCACCCCTCCTCACCCGGTCcaccctttgccgtctccaggaagaggcggtggagaagcac | ||||
| ****************************************************************** | |||||
| rat | (((.(((((((((((.((...((((.........)))).......)).)))).)))))))..))). | 0.870 -22.70 | |||
| rat | chromosome:12:44296796:44296861:-1 | intergenic |
block505813 [novel_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.488 | no | no | 0.43/0.45 | 21/22/1.00 | 1.6 | 2.0 | 5 | 0 | 1 | 0 | 2 | -3 | 3arm | 2 | nd | 0.14 | 3 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------UCUUGAG-------------------- | 3 | novel |
| seed | -----------------------------------------------GAGGACU---------------- | 2 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------TTCTTGAGGACTGCAGATACA------- | 21 | 3 | |
| ----------------------------------------------TGAGGACTGCAGATACAAGGTT-- | 22 | 2 | |
| rat | ttaatttttattttttgatagtctgattcaccctttcagcttTTCTTGAGGACTGCAGATACAAGGTTaa | ||
| ********************************************************************** | |||
| rat | .(((((((.....((((.((((((...........((((......))))))))))))))...))))))). | 0.870 -8.50 |
| rat | chromosome:15:84142325:84142394:1 | intergenic |
block601548 [novel_shortStem_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.353 | no | no | 0.43/0.50 | 18/24/0.75 | 1.2 | 2.5 | 4 | 0 | 2 | 0 | 4 | -3 | 3arm | 1 | nd | 0.28 | 2 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------GAGCUCU------------------- | 2 | novel | |
| seed | ----------------------------------UGAGCUC-------------------- | 1 | novel | |
| seed | ---------------------------------CUGAGCU--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------------------------------TCTGAGCTCTCCGTGATGTT--------- | 20 | - | 1 | |
| ---------------------------------CTGAGCTCTCCGTGATGTTGAAAA---- | 24 | - | 1 | |
| ----------------------------------TGAGCTCTCCGTGATGTT--------- | 18 | 1 | - | |
| ----------------------------------TGAGCTCTCCGTGATGTTGAAAA---- | 23 | - | 1 | |
| rat | accacaatgcataaaaccagagcatgcttctcTCTGAGCTCTCCGTGATGTTGAAAAtggt | |||
| ************************************************************* | ||||
| rat | ((((....((((...((..(((...((((......)))).))).)).))))......)))) | 0.990 -10.60 | ||
| rat | chromosome:17:17554650:17554710:-1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31018 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.