other hairpins
miRNAunknown_lenNOK_Multihit_randfoldOK (8 loci)
block630552 (miRNA) [miRNAunknown_lenNOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.37/0.37 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | 0 | 5arm | 281 | nd | 0.16 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------GUGUGUG----------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| -------------------------TGTGTGTGTACATGTGTAT------------------------------------------------------------ | 19 | 1 | |
| rat | tgtatttgcatgtgtgtatgttttgTGTGTGTGTACATGTGTATacagggagaaacatatacatacacacacacgcaaatacacacacacacacacaagcacac | ||
| ******************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2 | ||
| .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>...... | ENSRNOT00000063324 ENSRNOG00000041571 | ||
| rat | (((.((((..(((((((.((((((((((((((((..((((((((............))))))))..)))))))))))))...))).)))))))..)))).))). | 1.000 -39.80 |
| rat | chromosome:17:79279602:79279705:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000051529|ENSRNOG00000029235 ## Same_strand|Exonic_non-coding|ENSRNOT00000063324|ENSRNOG00000041571 ## Same_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## ENSRNOG00000041571|miRNA|| ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: dust 79279663 79279681 0 class=dust,trf 1 11 0 class=trf,trf 490 509 0 class=trf,(CATATA)n 2 20 -1 class=Simple_repeat,(CATATA)n 2 47 -1 class=Simple_repeat} |
block630559 (miRNA) [miRNAunknown_lenNOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.37/0.37 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | 0 | 5arm | 281 | nd | 0.16 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------GUGUGUG----------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| -------------------------TGTGTGTGTACATGTGTAT------------------------------------------------------------ | 19 | 1 | |
| rat | tgtatttgcatgtgtgtatgttttgTGTGTGTGTACATGTGTATacagggagaaacatatacatacacacacacgcaaatacacacacacacacacaagcacac | ||
| ******************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2 | ||
| .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>...... | ENSRNOT00000063384 ENSRNOG00000041631 | ||
| rat | (((.((((..(((((((.((((((((((((((((..((((((((............))))))))..)))))))))))))...))).)))))))..)))).))). | 1.000 -39.80 |
| rat | chromosome:17:79280594:79280697:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000051529|ENSRNOG00000029235 ## Same_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## Same_strand|Exonic_non-coding|ENSRNOT00000063384|ENSRNOG00000041631 ## ENSRNOG00000041631|miRNA|| ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: trf 1 11 0 class=trf,(CATATA)n 2 20 -1 class=Simple_repeat,(CATATA)n 2 47 -1 class=Simple_repeat,dust 79280655 79280673 0 class=dust} |
block2105813 (miRNA) [miRNAunknown_lenNOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 45 | 0 | 3arm | 145 | nd | 0.22 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------CACAAGC------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| -----------------------------------------GCACAAGCACACACACAC--------------------------------------------- | 18 | 2 | |
| rat | tgctttcacacgtgtgcgcgtgtgtgcgtgcgcgtgcgcgcGCACAAGCACACACACACacacacacacacacacacacacacacacacacacaccagaaggca | ||
| ******************************************************************************************************** | |||
| ................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............... | ENSRNOT00000063107 ENSRNOG00000041354 | ||
| rat | .((((((....(((((...(((((((.((((..((((....))))..)))).)))))))...)))))..............................)))))). | 0.420 -35.38 |
| rat | chromosome:7:40202923:40203026:-1 | Opposite_strand|Exonic_non-coding|ENSRNOT00000063107|ENSRNOG00000041354 ## ENSRNOG00000041354|miRNA|| ## {Repeats: (TG)n 1 47 -1 class=Simple_repeat,(CG)n 2 6 -1 class=Simple_repeat,dust 40202968 40202986 0 class=dust,(CG)n 2 40 -1 class=Simple_repeat,(TG)n 37 47 -1 class=Simple_repeat,trf 37 47 0 class=trf} |
block1117824 (miRNA) [miRNAunknown_lenNOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.32/0.32 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 14 | 15 | 3arm | 197 | nd | 0.05 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------UACAUAC------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| -------------------------------------------------------------------ATACATACACACACACAAA-------------- | 19 | 1 | |
| rat | gatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacatgcatacatacATACATACACACACACAAAtacacacacacatc | ||
| **************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000000330 ENSRNOG00000000302 Sesn1 | ||
| ......<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......... | ENSRNOT00000063044 ENSRNOG00000041291 | ||
| rat | (((((((((((((((.((((((((((((((((((((((((((((((((....)))))))))))))))))))))))))))))))).))))))))))))))) | 1.000 -75.50 |
| rat | chromosome:20:45836938:45837037:1 | Same_strand|Intronic_coding|ENSRNOT00000000330|ENSRNOG00000000302 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000063044|ENSRNOG00000041291 ## Same_strand|Boundary_non-coding|ENSRNOT00000057129|ENSRNOG00000000302 ## ENSRNOG00000041291|miRNA|| ## ENSRNOG00000000302|protein_coding|Sesn1|sestrin 1 Gene [Source:MGI (curated);Acc:Sesn1-001] ## {Repeats: (CATA)n 17 36 1 class=Simple_repeat,trf 14 33 0 class=trf,dust 45836952 45836971 0 class=dust,(CATA)n 4 47 1 class=Simple_repeat} |
miRNAunknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK (8 loci)
sblock12650 (miRNA) [miRNAunknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.37/0.53 | 18/24/0.57 | 0.0 0.0 0.5 0.4 | 1.6 3.0 0.5 0.3 | 272 2 2 49 | 0 0 0 0 | 2 1 1 2 | 0 0 0 0 | 20 29 32 21 | 9 -3 4 14 | 5arm 5arm_loop 3arm 3arm | 1 1 2 2 | nd nd nd nd | 0.10 0.00 0.32 0.10 | 1 0 6 1 | 425 | 2 | -1 | -1 |
| reads | miRBase family seed | |||
| seed | ---------------------UCAUUCG------------------------------------------------------------------------------------ | 309 | novel | |
| seed | -----------------------------------------------------------------------ACAUCUG---------------------------------- | 66 | novel | |
| seed | -------------------------------------------------------------------------AUCUGGG-------------------------------- | 25 | novel | |
| seed | ----------------------CAUUCGG----------------------------------------------------------------------------------- | 15 | novel | |
| seed | ------------------------------------------------------------------------CAUCUGG--------------------------------- | 3 | novel | |
| seed | ------------------------------UGUCCAG--------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------AUUCGGC---------------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------------------------------------------------------GGCAAUA-------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------GCAAUAA------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------UACAUCU----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --------------------TTCATTCGGCTGTCCAGATGT----------------------------------------------------------------------- | 21 | 55 | 36 | |
| --------------------TTCATTCGGCTGTCCAGA-------------------------------------------------------------------------- | 18 | 61 | 29 | |
| --------------------TTCATTCGGCTGTCCAGATG------------------------------------------------------------------------ | 20 | 34 | 27 | |
| --------------------TTCATTCGGCTGTCCAGAT------------------------------------------------------------------------- | 19 | 30 | 15 | |
| ----------------------------------------------------------------------TACATCTGGGCAACTGATTGA--------------------- | 21 | 12 | 21 | |
| --------------------TTCATTCGGCTGTCCAGATGTA---------------------------------------------------------------------- | 22 | 13 | 8 | |
| ------------------------------------------------------------------------CATCTGGGCAACTGATTGA--------------------- | 19 | 6 | 9 | |
| ----------------------------------------------------------------------TACATCTGGGCAACTGAT------------------------ | 18 | 5 | 6 | |
| ----------------------------------------------------------------------TACATCTGGGCAACTGATT----------------------- | 19 | 7 | 4 | |
| ----------------------------------------------------------------------TACATCTGGGCAACTGATTG---------------------- | 20 | 2 | 5 | |
| ---------------------TCATTCGGCTGTCCAGATGT----------------------------------------------------------------------- | 20 | 5 | 2 | |
| ------------------------------------------------------------------------CATCTGGGCAACTGATTGAACT------------------ | 22 | 5 | 1 | |
| ----------------------------------------------------------------------TACATCTGGGCAACTGATTGAAC------------------- | 23 | 2 | 2 | |
| ---------------------TCATTCGGCTGTCCAGATGTATC-------------------------------------------------------------------- | 23 | 2 | 1 | |
| ---------------------TCATTCGGCTGTCCAGAT------------------------------------------------------------------------- | 18 | 2 | - | |
| -----------------------------------------------------------------------ACATCTGGGCAACTGATTGA--------------------- | 20 | 1 | 1 | |
| ----------------------CATTCGGCTGTCCAGATGT----------------------------------------------------------------------- | 19 | 2 | - | |
| ---------------------TCATTCGGCTGTCCAGATGTA---------------------------------------------------------------------- | 21 | - | 2 | |
| ------------------------------------------------------------------------CATCTGGGCAACTGATTGAAC------------------- | 21 | - | 2 | |
| ------------------------------------------------------------------------CATCTGGGCAACTGATTGAA-------------------- | 20 | - | 1 | |
| -------------------------------------------------------------GGCAATAAATACATCTGGG-------------------------------- | 19 | - | 1 | |
| -----------------------------CTGTCCAGATGTATCCAA----------------------------------------------------------------- | 18 | 1 | - | |
| ---------------------TCATTCGGCTGTCCAGATG------------------------------------------------------------------------ | 19 | 1 | - | |
| -----------------------------------------------------------------------ACATCTGGGCAACTGATTGAAC------------------- | 22 | 1 | - | |
| ------------------------------------------------------------TGGCAATAAATACATCTGG--------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------------------------CATCTGGGCAACTGATTG---------------------- | 18 | 1 | - | |
| --------------------TTCATTCGGCTGTCCAGATGTATC-------------------------------------------------------------------- | 24 | 1 | - | |
| -----------------------------CTGTCCAGATGTATCCAAGTACCC----------------------------------------------------------- | 24 | 1 | - | |
| ---------------------------------------------------------------------ATACATCTGGGCAACTGATTGA--------------------- | 22 | 1 | - | |
| rat | gagagatgaggggttaagagTTCATTCGGCTGTCCAGATGTatccaagtaccctgttatttggcaataaaTACATCTGGGCAACTGATTGAacttttcgcttctcttgactc | |||
| **************************************************************************************************************** | ||||
| ........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.... | ENSRNOT00000063291 ENSRNOG00000041538 | |||
| rat | (((....(((..((.(((((((((.((((.((((((((((((((((((((......)))))))......))))))))))))).)))).))))))))).))..)))....))) | 1.000 -51.70 | ||
| rat | chromosome:X:31139089:31139200:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000063291|ENSRNOG00000041538 ## ENSRNOG00000041538|miRNA|| |
sblock12721 (miRNA) [miRNAunknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.32/0.58 | 18/23/0.52 | 0.0 0.0 0.3 | 0.0 0.6 0.9 | 2 1920 117 | 0 0 0 | 2 10 10 | 0 0 0 | 0 19 12 | 26 6 4 | 5arm 5arm 3arm | 1 2 2 | nd nd nd | 0.37 0.15 0.17 | 5 2 2 | 4137 | 10 | 0 | 2 |
| reads | miRBase family seed | |||||||||||
| seed | --------------------UUUGCGA------------------------------------------------------------- | 3871 | novel | |||||||||
| seed | -------------------------------------------------------UUGGGGA-------------------------- | 114 | novel | |||||||||
| seed | ---------------------UUGCGAU------------------------------------------------------------ | 91 | novel | |||||||||
| seed | --------------------------------------------------------UGGGGAC------------------------- | 49 | novel | |||||||||
| seed | -------------------UUUUGCG-------------------------------------------------------------- | 5 | miR-450a | |||||||||
| seed | ---------------------------------------------------------GGGGACG------------------------ | 3 | novel | |||||||||
| seed | ------------------------------------------------------AUUGGGG--------------------------- | 2 | novel | |||||||||
| seed | -AGCCAGA-------------------------------------------------------------------------------- | 2 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------TTTTGCGATGTGTTCCTAAT------------------------------------------------- | 20 | 107 | 78 | 94 | 110 | 233 | 110 | 277 | 157 | 194 | 450 | |
| -------------------TTTTGCGATGTGTTCCTA--------------------------------------------------- | 18 | 104 | 75 | 75 | 69 | 156 | 102 | 123 | 98 | 162 | 150 | |
| -------------------TTTTGCGATGTGTTCCTAA-------------------------------------------------- | 19 | 39 | 35 | 36 | 36 | 92 | 81 | 69 | 127 | 102 | 141 | |
| -------------------TTTTGCGATGTGTTCCTAATA------------------------------------------------ | 21 | 3 | 8 | 9 | 5 | 10 | 13 | 17 | 2 | 21 | 10 | |
| -------------------TTTTGCGATGTGTTCCTAATAT----------------------------------------------- | 22 | 4 | 5 | 2 | 1 | 8 | 9 | 4 | 13 | 4 | 17 | |
| --------------------TTTGCGATGTGTTCCTAAT------------------------------------------------- | 19 | 1 | 2 | - | 2 | 4 | 1 | 7 | 9 | 6 | 13 | |
| ------------------------------------------------------ATTGGGGACGCTTCGCATTCAT------------ | 22 | 4 | 5 | - | 3 | 3 | 3 | 10 | 3 | 2 | 4 | |
| ------------------------------------------------------ATTGGGGACGCTTCGCATTCA------------- | 21 | 1 | 7 | 6 | - | 4 | 1 | 4 | 1 | 2 | 8 | |
| --------------------TTTGCGATGTGTTCCTAA-------------------------------------------------- | 18 | 2 | - | 1 | 1 | 3 | 2 | 3 | 8 | 4 | 5 | |
| -------------------------------------------------------TTGGGGACGCTTCGCATTCAT------------ | 21 | 4 | 2 | - | 4 | 2 | 3 | 1 | 1 | 3 | 6 | |
| -------------------TTTTGCGATGTGTTCCTAATATG---------------------------------------------- | 23 | 1 | 3 | 2 | - | 3 | 5 | 1 | - | 7 | 2 | |
| ------------------------------------------------------ATTGGGGACGCTTCGCAT---------------- | 18 | 2 | 2 | 3 | 2 | 3 | 2 | 5 | 2 | - | 1 | |
| ------------------------------------------------------ATTGGGGACGCTTCGCATTC-------------- | 20 | 1 | 3 | 1 | 2 | 2 | - | 3 | 2 | 2 | 3 | |
| -------------------------------------------------------TTGGGGACGCTTCGCATTCA------------- | 20 | 3 | - | 3 | 1 | - | - | 4 | 3 | 2 | 2 | |
| --------------------TTTGCGATGTGTTCCTAATAT----------------------------------------------- | 21 | - | 1 | - | 4 | - | 2 | 2 | - | - | 1 | |
| --------------------TTTGCGATGTGTTCCTAATA------------------------------------------------ | 20 | 1 | - | - | - | - | - | 1 | 1 | 1 | 1 | |
| -------------------------------------------------------TTGGGGACGCTTCGCATTCATG----------- | 22 | 1 | - | - | - | - | - | 1 | - | - | - | |
| ------------------TTTTTGCGATGTGTTCCTA--------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------TTGGGGACGCTTCGCATTC-------------- | 19 | - | - | - | - | 1 | - | - | 1 | - | - | |
| --------------------------------------------------------TGGGGACGCTTCGCATTCAT------------ | 20 | 1 | - | - | - | - | - | - | - | 1 | - | |
| AAGCCAGATGCTGAACTAT--------------------------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------ATTGGGGACGCTTCGCATT--------------- | 19 | - | - | 1 | - | - | - | 1 | - | - | - | |
| --------------------TTTGCGATGTGTTCCTAATATG---------------------------------------------- | 22 | - | - | - | - | - | 1 | - | - | - | 1 | |
| --------------------------------------------------------TGGGGACGCTTCGCATTCA------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------TTTTTGCGATGTGTTCCTAA-------------------------------------------------- | 20 | - | - | 1 | - | - | - | - | - | - | - | |
| ------------------TTTTTGCGATGTGTTCCT---------------------------------------------------- | 18 | - | - | - | 1 | - | - | - | - | - | - | |
| -----------------------------------------------------TATTGGGGACGCTTCGCATTC-------------- | 21 | - | - | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------TATTGGGGACGCTTCGCAT---------------- | 19 | - | - | 1 | - | - | - | - | - | - | - | |
| ------------------TTTTTGCGATGTGTTCCTAATA------------------------------------------------ | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| -------------------------------------------------------TTGGGGACGCTTCGCATT--------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| rat | aagccagatgctgaactatTTTTGCGATGTGTTCCTAATatgtactatgagtgtattggggacgcttcgcattcatggttctgcatca | |||||||||||
| **************************************************************************************** | ||||||||||||
| -------------------------------------------------------------------------------------------------- | ENSRNOT00000046779 ENSRNOG00000037484 | |||||||||||
| ...>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000054660 ENSRNOG00000036556 | |||||||||||
| rat | ......(((((.(((((((...(((((.(((((((((((((..((.....))))))))))))))).)))))...))))))).))))). | 1.000 -41.20 | ||||||||||
| rat | chromosome:X:139995085:139995172:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000046779|ENSRNOG00000037484 ## Same_strand|Exonic_non-coding|ENSRNOT00000054660|ENSRNOG00000036556 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000056740|ENSRNOG00000037484 ## ENSRNOG00000036556|miRNA|| ## ENSRNOG00000037484|protein_coding|| |
sblock12728 (miRNA) [miRNAunknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.57/0.72 | 18/24/0.55 | 0.0 0.8 | 1.8 1.4 | 683 50 | 0 0 | 10 7 | 0 0 | 28 19 | 1 3 | 5arm_loop 3arm | 1 2 | nd nd | 0.14 0.10 | 1 1 | 1167 | 10 | 6 | 7 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------ACCCUGG------------------------------------------------------------------------- | 1033 | novel | |||||||||
| seed | ----------------------------GACCCUG-------------------------------------------------------------------------- | 61 | novel | |||||||||
| seed | ---------------------------------------------------------------------AGCAGGG--------------------------------- | 45 | novel | |||||||||
| seed | ----------------------------------------------------------------GGGAGAG-------------------------------------- | 16 | novel | |||||||||
| seed | --------------------------------------------------------------------GAGCAGG---------------------------------- | 5 | novel | |||||||||
| seed | ---------------------------------------------------------------AGGGAGA--------------------------------------- | 3 | novel | |||||||||
| seed | -----------------------------------------------------------------GGAGAGC------------------------------------- | 1 | novel | |||||||||
| seed | -------------------------------CCUGGUC----------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------CCCUGGU------------------------------------------------------------------------ | 1 | novel | |||||||||
| seed | ---------------------------AGACCCU--------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------GACCCTGGTCTGCACTCTGTCT----------------------------------------------------------- | 22 | 126 | 98 | - | 1 | 6 | 7 | 17 | 31 | 27 | 19 | |
| ----------------------------GACCCTGGTCTGCACTCTG-------------------------------------------------------------- | 19 | 72 | 91 | 1 | - | 4 | 1 | 26 | 25 | 7 | 16 | |
| ----------------------------GACCCTGGTCTGCACTCT--------------------------------------------------------------- | 18 | 81 | 73 | 1 | - | 1 | 2 | 16 | 27 | 22 | 10 | |
| ----------------------------GACCCTGGTCTGCACTCTGTC------------------------------------------------------------ | 21 | 78 | 64 | 1 | - | 2 | 1 | 26 | 13 | 7 | 15 | |
| --------------------------------------------------------------------GAGCAGGGCAGGGTTTCCCAT-------------------- | 21 | 3 | 2 | - | - | - | - | 3 | 6 | 2 | 1 | |
| --------------------------------------------------------------------GAGCAGGGCAGGGTTTCCCA--------------------- | 20 | 1 | 4 | - | - | 1 | - | 4 | 6 | - | - | |
| ---------------------------AGACCCTGGTCTGCACTC---------------------------------------------------------------- | 18 | 5 | 2 | - | - | - | - | - | 7 | 1 | - | |
| ---------------------------AGACCCTGGTCTGCACTCTGTC------------------------------------------------------------ | 22 | 4 | 8 | - | - | - | - | 1 | - | 2 | - | |
| ----------------------------GACCCTGGTCTGCACTCTGT------------------------------------------------------------- | 20 | 2 | 7 | - | - | - | 1 | - | 1 | 1 | 2 | |
| ---------------------------AGACCCTGGTCTGCACTCTGTCT----------------------------------------------------------- | 23 | 5 | 3 | - | - | - | - | 1 | 3 | - | 2 | |
| ---------------------------AGACCCTGGTCTGCACTCT--------------------------------------------------------------- | 19 | 4 | 2 | - | - | 1 | - | - | 1 | 3 | 1 | |
| --------------------------------------------------------------------GAGCAGGGCAGGGTTTCCC---------------------- | 19 | 4 | 2 | - | - | - | - | 1 | 1 | - | 1 | |
| -------------------------------------------------------------------AGAGCAGGGCAGGGTTTCCC---------------------- | 20 | 3 | - | - | - | - | - | 2 | - | - | - | |
| ---------------------------AGACCCTGGTCTGCACTCTG-------------------------------------------------------------- | 20 | 2 | 2 | - | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------AGGGAGAGCAGGGCAGGGT--------------------------- | 19 | 2 | 1 | - | - | - | - | - | 1 | - | - | |
| ----------------------------GACCCTGGTCTGCACTCTGTCTG---------------------------------------------------------- | 23 | 1 | 2 | - | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------AGGGAGAGCAGGGCAGGGTT-------------------------- | 20 | 3 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------GAGCAGGGCAGGGTTTCCCATA------------------- | 22 | - | 1 | - | - | - | - | - | 2 | - | - | |
| ---------------------------------------------------------------AGGGAGAGCAGGGCAGGGTTTCCC---------------------- | 24 | - | 1 | - | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------AGGGAGAGCAGGGCAGGGTTTC------------------------ | 22 | 1 | - | - | - | - | - | - | 1 | - | - | |
| --------------------------------------------------------------AAGGGAGAGCAGGGCAGGG---------------------------- | 19 | - | - | - | - | - | - | 2 | - | - | - | |
| ---------------------------------------------------------------AGGGAGAGCAGGGCAGGGTTT------------------------- | 21 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------AGGGAGAGCAGGGCAGGGTTTCC----------------------- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------CCCTGGTCTGCACTCTGTCTGG--------------------------------------------------------- | 22 | - | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------AGGGAGAGCAGGGCAGGG---------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------AAGGGAGAGCAGGGCAGGGTTTCC----------------------- | 24 | - | - | - | - | - | - | 1 | - | - | - | |
| --------------------------GAGACCCTGGTCTGCACTCT--------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------ACCCTGGTCTGCACTCTGTC------------------------------------------------------------ | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------GGGAGAGCAGGGCAGGGTT-------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | tggaatgttggaactgctgctgttgggaGACCCTGGTCTGCACTCTGTCTggaaacttacagaagggagagcagggcagggtttcccatacagaggcacaggcaaccac | |||||||||||
| ************************************************************************************************************* | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049429 ENSRNOG00000003523 Fgf13 | |||||||||||
| ......................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.................. | ENSRNOT00000054382 ENSRNOG00000036259 | |||||||||||
| rat | (((..((((.....((((.((((((((((((((((.(((((.((((.((((........))))..)))).))))).)))))))))))).)))).))))..)))).))). | 1.000 -56.70 | ||||||||||
| rat | chromosome:X:144243818:144243926:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000054382|ENSRNOG00000036259 ## Same_strand|Intronic_coding|ENSRNOT00000049429|ENSRNOG00000003523 ## ENSRNOG00000003523|protein_coding|Fgf13|fibroblast growth factor 13 [Source:RefSeq_peptide;Acc:NP_445880] ## ENSRNOG00000036259|miRNA|| |
sblock12743 (miRNA) [miRNAunknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.002 | no | no | 0.36/0.48 | 18/24/0.69 | 0.0 0.0 | 1.0 1.5 | 162 10 | 0 0 | 10 4 | 0 0 | 28 28 | 5 3 | 5arm 3arm | 1 1 | nd nd | 0.16 0.09 | 1 1 | 271 | 10 | 0 | 3 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------ACUCCAG------------------------------------------------------------------------------ | 252 | novel | |||||||||
| seed | ----------------------------------------------------------------GAUUGAC------------------------------------------- | 10 | novel | |||||||||
| seed | ------------------------------CUCCAGA----------------------------------------------------------------------------- | 9 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------TACTCCAGAATATGGCAATCA----------------------------------------------------------------- | 21 | 3 | 1 | 1 | - | 1 | 1 | 16 | 23 | 33 | 30 | |
| ----------------------------TACTCCAGAATATGGCAA-------------------------------------------------------------------- | 18 | - | - | - | - | - | - | 9 | 25 | 14 | 10 | |
| ----------------------------TACTCCAGAATATGGCAAT------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | 4 | 6 | 11 | 3 | |
| ----------------------------TACTCCAGAATATGGCAATCATGC-------------------------------------------------------------- | 24 | 2 | - | - | - | 1 | - | 2 | 7 | - | 9 | |
| ----------------------------TACTCCAGAATATGGCAATCATG--------------------------------------------------------------- | 23 | - | - | 1 | - | - | 1 | 2 | 1 | 3 | 8 | |
| ----------------------------TACTCCAGAATATGGCAATCAT---------------------------------------------------------------- | 22 | - | - | - | 1 | - | - | 1 | 6 | - | 7 | |
| ----------------------------TACTCCAGAATATGGCAATC------------------------------------------------------------------ | 20 | - | - | - | - | - | - | 1 | 6 | 1 | - | |
| ---------------------------------------------------------------TGATTGACATGTCTGCAGTGGA----------------------------- | 22 | - | - | - | - | - | - | - | 2 | 1 | 2 | |
| -----------------------------ACTCCAGAATATGGCAATCA----------------------------------------------------------------- | 20 | - | - | - | - | - | - | 1 | 1 | 2 | - | |
| ---------------------------------------------------------------TGATTGACATGTCTGCAGTG------------------------------- | 20 | - | - | - | - | - | - | 2 | 1 | - | - | |
| -----------------------------ACTCCAGAATATGGCAATCATGC-------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | 1 | - | 1 | |
| -----------------------------ACTCCAGAATATGGCAATCATG--------------------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------TGATTGACATGTCTGCAGTGGAG---------------------------- | 23 | - | - | - | - | - | - | - | 1 | - | - | |
| -----------------------------ACTCCAGAATATGGCAAT------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------ACTCCAGAATATGGCAATCAT---------------------------------------------------------------- | 21 | - | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------TGATTGACATGTCTGCAG--------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | ttgatcatgacaactgtgtgtggttcttTACTCCAGAATATGGCAATCAtgcataattaaatgtgattgacatgtctgcagtggagtaacacatgcaatatatggcatgtgcag | |||||||||||
| ****************************************************************************************************************** | ||||||||||||
| ........................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>......................... | ENSRNOT00000063039 ENSRNOG00000041286 | |||||||||||
| rat | .((..((((.((..((((((((...(((((((.(((.(((((.(((((..((((......))))))))).)))))))).)))))))...)))))))).....)).))))..)). | 0.950 -35.60 | ||||||||||
| rat | chromosome:X:154190972:154191085:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000063039|ENSRNOG00000041286 ## ENSRNOG00000041286|miRNA|| |
sblock12807 (miRNA) [miRNAunknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.007 | no | no | 0.47/0.65 | 18/23/0.59 | 0.0 0.0 | 0.3 0.8 | 7 443 | 0 0 | 2 10 | 0 0 | 31 30 | 3 2 | 5arm 3arm | 1 1 | nd nd | 0.21 0.17 | 2 1 | 862 | 10 | 0 | 2 |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------------------------------------------------CGUCCUG------------------------------------------- | 854 | novel | |||||||||
| seed | --------------------------------UCUGCAA------------------------------------------------------------------------------- | 7 | novel | |||||||||
| seed | ---------------------------------------------------------------------GUCCUGA------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------------------CCGTCCTGAGCTTGTCGAGC------------------------------- | 20 | 74 | 62 | 1 | 7 | 15 | 13 | 19 | 27 | 22 | 45 | |
| -------------------------------------------------------------------CCGTCCTGAGCTTGTCGA--------------------------------- | 18 | 50 | 36 | 5 | 2 | 13 | 4 | 18 | 18 | 10 | 25 | |
| -------------------------------------------------------------------CCGTCCTGAGCTTGTCGAG-------------------------------- | 19 | 60 | 26 | - | 1 | 10 | 5 | 14 | 21 | 11 | 21 | |
| -------------------------------------------------------------------CCGTCCTGAGCTTGTCGAGCT------------------------------ | 21 | 20 | 22 | 2 | 4 | 7 | 7 | 11 | 16 | 21 | 38 | |
| -------------------------------------------------------------------CCGTCCTGAGCTTGTCGAGCTA----------------------------- | 22 | 20 | 7 | 1 | 1 | 2 | 5 | 6 | 9 | 2 | 7 | |
| -------------------------------------------------------------------CCGTCCTGAGCTTGTCGAGCTAT---------------------------- | 23 | 4 | - | - | - | 2 | 1 | - | 1 | - | 3 | |
| -------------------------------CTCTGCAACCTTAGGACTT-------------------------------------------------------------------- | 19 | - | 5 | - | - | - | - | - | - | - | - | |
| -------------------------------CTCTGCAACCTTAGGACT--------------------------------------------------------------------- | 18 | - | - | - | 2 | - | - | - | - | - | - | |
| --------------------------------------------------------------------CGTCCTGAGCTTGTCGAGCT------------------------------ | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | ctttgtgtcatggcttcacctgaatgcatgactctgcaaccttaggacttgcagaattaacagaatgCCGTCCTGAGCTTGTCGAGCTatgcgtttctgggcatttcatctctacaga | |||||||||||
| ********************************************************************************************************************** | ||||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000004505 ENSRNOG00000032208 RGD1563178_predicted | |||||||||||
| ..................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..................... | ENSRNOT00000062106 ENSRNOG00000040353 | |||||||||||
| rat | .((((((..((((.....((.(((((((((.(((.((((.((((((((..(((............))).)))))))).)))).))).)))))))))..)).....))))...)))))) | 0.980 -38.30 | ||||||||||
| rat | chromosome:X:88378172:88378289:1 | Same_strand|Exonic_non-coding|ENSRNOT00000062106|ENSRNOG00000040353 ## Same_strand|Intronic_coding|ENSRNOT00000004505|ENSRNOG00000032208 ## ENSRNOG00000040353|miRNA|| ## ENSRNOG00000032208|protein_coding|RGD1563178_predicted| |
sblock4462 (miRNA) [miRNAunknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.003 | no | no | 0.29/0.44 | 18/22/0.29 | 0.0 0.0 | 1.0 0.2 | 10 56 | 0 0 | 2 2 | 0 0 | 26 32 | 2 4 | 5arm 3arm | 1 1 | nd nd | 0.14 0.16 | 2 2 | 103 | 2 | 2 | -1 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------UAAGACG------------------------------------------- | 77 | miR-208 | |
| seed | ---------------------------AGCUUUU------------------------------------------------------------------------------ | 11 | novel | |
| seed | -------------------------------------------------------------AUAAGAC-------------------------------------------- | 9 | novel | |
| seed | ---------------------------------------------------------------AAGACGA------------------------------------------ | 6 | novel | |
| len | cloning frequencies | |||
| T4S1 | T4S2 | |||
| -------------------------------------------------------------ATAAGACGAACAAAAGGT--------------------------------- | 18 | 17 | 28 | |
| -------------------------------------------------------------ATAAGACGAACAAAAGGTT-------------------------------- | 19 | 8 | 11 | |
| -------------------------------------------------------------ATAAGACGAACAAAAGGTTT------------------------------- | 20 | 4 | 3 | |
| -------------------------------------------------------------ATAAGACGAACAAAAGGTTTG------------------------------ | 21 | 6 | - | |
| ------------------------------------------------------------TATAAGACGAACAAAAGGTTT------------------------------- | 21 | 2 | 4 | |
| --------------------------AAGCTTTTTGCTCGCGTTAT------------------------------------------------------------------ | 20 | 1 | 4 | |
| --------------------------------------------------------------TAAGACGAACAAAAGGTTT------------------------------- | 19 | 2 | - | |
| --------------------------AAGCTTTTTGCTCGCGTTATGT---------------------------------------------------------------- | 22 | 2 | - | |
| ------------------------------------------------------------TATAAGACGAACAAAAGG---------------------------------- | 18 | - | 2 | |
| --------------------------AAGCTTTTTGCTCGCGTT-------------------------------------------------------------------- | 18 | 2 | - | |
| --------------------------------------------------------------TAAGACGAACAAAAGGTT-------------------------------- | 18 | - | 2 | |
| --------------------------AAGCTTTTTGCTCGCGTTATG----------------------------------------------------------------- | 21 | - | 2 | |
| --------------------------------------------------------------TAAGACGAACAAAAGGTTTG------------------------------ | 20 | 2 | - | |
| ------------------------------------------------------------TATAAGACGAACAAAAGGT--------------------------------- | 19 | - | 1 | |
| rat | acccccacctcctgctcctctcagggaagctttttgctcgcgttatgtttctcatccgaatATAAGACGAACAAAAGGTTtgtctgagggctgagtgcacccacctggggta | |||
| **************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000024186 ENSRNOG00000016983 Myh7 | |||
| .....................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>........................ | ENSRNOT00000063134 ENSRNOG00000041381 | |||
| rat | (((((........((((((((((((.((((((((((.(((..((((((((.......))))))))..))).)))))))))).))))))))..))))..........))))). | 0.930 -41.97 | ||
| rat | chromosome:15:33078016:33078127:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000063134|ENSRNOG00000041381 ## Same_strand|Intronic_coding|ENSRNOT00000024186|ENSRNOG00000016983 ## ENSRNOG00000016983|protein_coding|Myh7|Myosin-7 (Myosin heavy chain 7) (Myosin heavy chain, cardiac muscle beta isoform) (MyHC-beta) (Myosin heavy chain slow isoform) (MyHC- slow). [Source:UniProtKB/Swiss-Prot;Acc:P02564] ## ENSRNOG00000041381|miRNA|| |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31020 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.