other hairpins
miRNAunknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK (8 loci)
sblock8373 (miRNA) [miRNAunknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.33/0.56 | 18/23/0.24 | 0.0 0.0 | 0.0 1.2 | 214 22 | 0 0 | 5 3 | 0 0 | 18 17 | 10 7 | 5arm 3arm | 1 1 | nd nd | 0.22 0.06 | 3 1 | 313 | 6 | -4 | 4 |
| reads | miRBase family seed | |||||||
| seed | -------------------UGUGUCA----------------------------------------------------------------------- | 278 | novel | |||||
| seed | ----------------------------------------------------------CAUCACG-------------------------------- | 28 | novel | |||||
| seed | ------------------UUGUGUC------------------------------------------------------------------------ | 4 | novel | |||||
| seed | --------------------GUGUCAA---------------------------------------------------------------------- | 3 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| ------------------TTGTGTCAATATGCGATG------------------------------------------------------------- | 18 | 116 | 98 | 3 | - | 2 | - | |
| ------------------TTGTGTCAATATGCGATGATGT--------------------------------------------------------- | 22 | 2 | 20 | 3 | - | - | - | |
| ---------------------------------------------------------TCATCACGTGGTGACGCAACATC----------------- | 23 | 7 | 8 | - | - | - | - | |
| ------------------TTGTGTCAATATGCGATGATG---------------------------------------------------------- | 21 | 5 | 5 | - | - | - | 1 | |
| ------------------TTGTGTCAATATGCGATGATGTG-------------------------------------------------------- | 23 | 3 | 8 | - | - | - | - | |
| ------------------TTGTGTCAATATGCGATGA------------------------------------------------------------ | 19 | 3 | 5 | - | - | 2 | - | |
| ---------------------------------------------------------TCATCACGTGGTGACGCA---------------------- | 18 | 3 | 1 | - | - | - | - | |
| ---------------------------------------------------------TCATCACGTGGTGACGCAAC-------------------- | 20 | - | 4 | - | - | - | - | |
| ---------------------------------------------------------TCATCACGTGGTGACGCAACAT------------------ | 22 | - | 2 | - | 1 | - | - | |
| -----------------ATTGTGTCAATATGCGAT-------------------------------------------------------------- | 18 | 1 | 1 | - | - | - | - | |
| -----------------ATTGTGTCAATATGCGATGA------------------------------------------------------------ | 20 | 2 | - | - | - | - | - | |
| ------------------TTGTGTCAATATGCGATGAT----------------------------------------------------------- | 20 | 1 | 1 | - | - | - | - | |
| ---------------------------------------------------------TCATCACGTGGTGACGCAA--------------------- | 19 | - | - | - | 1 | - | - | |
| -------------------TGTGTCAATATGCGATGATGT--------------------------------------------------------- | 21 | - | 1 | - | - | - | - | |
| ---------------------------------------------------------TCATCACGTGGTGACGCAACA------------------- | 21 | - | 1 | - | - | - | - | |
| -------------------TGTGTCAATATGCGATGAT----------------------------------------------------------- | 19 | 1 | - | - | - | - | - | |
| -------------------TGTGTCAATATGCGATGATG---------------------------------------------------------- | 20 | 1 | - | - | - | - | - | |
| rat | tgatattatgccatggcaTTGTGTCAATATGCGATGatgtgttgtgatggcacagcgtcatcacgtggtgacgcaacatcatgacgtaagacatcac | |||||||
| ************************************************************************************************* | ||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000031714 ENSRNOG00000021468 Grm8 | |||||||
| .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>...... | ENSRNOT00000054571 ENSRNOG00000036461 | |||||||
| rat | ((((.(((((.(((((..((((((((...((((.((((((((((((....))))))).))))))))).))))))))..))))).)))))...)))). | 0.910 -39.40 | ||||||
| rat | chromosome:4:54685582:54685678:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000054571|ENSRNOG00000036461 ## Same_strand|Intronic_coding|ENSRNOT00000031714|ENSRNOG00000021468 ## ENSRNOG00000021468|protein_coding|Grm8|Metabotropic glutamate receptor 8 precursor (mGluR8). [Source:UniProtKB/Swiss-Prot;Acc:P70579] ## ENSRNOG00000036461|miRNA|| |
sblock8918 (miRNA) [miRNAunknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.56/0.63 | 18/23/0.58 | 0.0 0.1 | 1.4 0.7 | 162 261 | 0 0 | 8 6 | 0 0 | 28 23 | 4 3 | 5arm 3arm | 2 2 | nd nd | 0.05 0.17 | 1 2 | 725 | 9 | 2 | 0 |
| reads | miRBase family seed | ||||||||||
| seed | ------------------------------------------------------------------AACCUGG----------------------------------- | 418 | novel | ||||||||
| seed | -----------------------------CAUGGAU------------------------------------------------------------------------ | 220 | novel | ||||||||
| seed | -----------------------------------------------------------------CAACCUG------------------------------------ | 85 | novel | ||||||||
| seed | -------------------------------------------------------------------ACCUGGA---------------------------------- | 1 | novel | ||||||||
| seed | --------------------------------------------------------------------CCUGGAG--------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S2 | |||
| -----------------------------------------------------------------CAACCTGGAGGACTCCATGC----------------------- | 20 | 50 | 33 | - | - | - | - | 18 | 80 | 1 | |
| -----------------------------------------------------------------CAACCTGGAGGACTCCATG------------------------ | 19 | 38 | 7 | - | - | - | - | 11 | 21 | - | |
| ----------------------------CCATGGATCTCCAGGTGGGTC----------------------------------------------------------- | 21 | 31 | 14 | 2 | 1 | - | 1 | 9 | 17 | - | |
| -----------------------------------------------------------------CAACCTGGAGGACTCCAT------------------------- | 18 | 13 | 14 | - | - | - | - | 15 | 32 | - | |
| ----------------------------CCATGGATCTCCAGGTGG-------------------------------------------------------------- | 18 | 22 | 10 | - | - | - | - | 12 | 7 | - | |
| ----------------------------CCATGGATCTCCAGGTGGG------------------------------------------------------------- | 19 | 21 | 9 | - | 3 | 1 | - | 4 | 11 | - | |
| ----------------------------------------------------------------CCAACCTGGAGGACTCCA-------------------------- | 18 | 6 | 7 | - | - | - | - | 6 | 28 | - | |
| -----------------------------------------------------------------CAACCTGGAGGACTCCATGCT---------------------- | 21 | 14 | 11 | - | - | - | - | 3 | 18 | 1 | |
| ----------------------------CCATGGATCTCCAGGTGGGT------------------------------------------------------------ | 20 | 24 | 8 | - | 1 | 1 | - | 3 | 1 | - | |
| -----------------------------------------------------------------CAACCTGGAGGACTCCATGCTG--------------------- | 22 | 20 | 7 | - | - | - | - | - | 7 | - | |
| ----------------------------------------------------------------CCAACCTGGAGGACTCCATG------------------------ | 20 | 4 | 4 | - | - | 1 | - | 2 | 6 | - | |
| ----------------------------------------------------------------CCAACCTGGAGGACTCCATGC----------------------- | 21 | 1 | 1 | - | - | - | - | 5 | 4 | - | |
| ----------------------------CCATGGATCTCCAGGTGGGTCA---------------------------------------------------------- | 22 | 3 | 1 | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------CCAACCTGGAGGACTCCATGCT---------------------- | 22 | 1 | - | - | - | - | - | - | 3 | - | |
| ----------------------------------------------------------------CCAACCTGGAGGACTCCAT------------------------- | 19 | - | - | - | - | - | - | 1 | 3 | - | |
| -----------------------------------------------------------------CAACCTGGAGGACTCCATGCTGT-------------------- | 23 | 1 | 1 | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------CCAACCTGGAGGACTCCATGCTG--------------------- | 23 | 1 | 1 | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------ACCTGGAGGACTCCATGCTGTTG------------------ | 23 | - | 1 | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------AACCTGGAGGACTCCATGC----------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------CCATGGATCTCCAGGTGGGTCAC--------------------------------------------------------- | 23 | 1 | - | - | - | - | - | - | - | - | |
| rat | gctgatttggaaagttcattgttcgacaCCATGGATCTCCAGGTGGGTCacgtttagatatacaCCAACCTGGAGGACTCCATGCtgttgagctgttcacgagcagcg | ||||||||||
| ************************************************************************************************************ | |||||||||||
| ............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>...................... | ENSRNOT00000054395 ENSRNOG00000036272 | ||||||||||
| rat | ((((.(((((((........((((((((.(((((((((((((((.(((...((........))))).)))))))))..)))))).))))))))..))).)))))))). | 0.980 -45.40 | |||||||||
| rat | chromosome:4:63815380:63815487:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054395|ENSRNOG00000036272 ## ENSRNOG00000036272|miRNA|| |
novel_5varHIGH_randfoldOK (8 loci)
block1449652 [novel_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.42/0.55 | 19/24/0.75 | 0.0 1.7 | 0.0 0.0 | 1 3 | 0 0 | 1 2 | 0 0 | 23 14 | 12 17 | 3arm 3arm | 1 1 | nd nd | 0.10 0.29 | 2 3 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------------------CGCCAUG------------------------------ | 2 | novel | ||
| seed | -----------------------------------------------------------------------UUUCCCG----------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------UGUCCUU------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S1 | T5S1 | |||
| ---------------------------------------------------------------------------CCGCCATGTCCTTTGTGGAGAGTT-------------- | 24 | 2 | - | - | |
| ----------------------------------------------------------------------CTTTCCCGCCATGTCCTTTG----------------------- | 20 | - | 1 | - | |
| --------------------------------------------------------------------------------ATGTCCTTTGTGGAGAGTT-------------- | 19 | - | - | 1 | |
| rat | gccgctgattggctgttgtcggggaggggcgtggcggtggaggacgctcgaccttcgcgggtctctcagtCTTTCCCGCCATGTCCTTTGTGGAGAGTTggaggtctgtaggc | ||||
| ***************************************************************************************************************** | |||||
| .................................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000006774 ENSRNOG00000005074 LOC499798 | ||||
| rat | (((((.((((.....((.((...((((((((((((((.(((((((....(((((....))))).....)))))))))))))))))))))...)).)).....)))).)).))) | 0.770 -49.50 | |||
| rat | chromosome:3:34722322:34722434:1 | Same_strand|Boundary_non-coding|ENSRNOT00000006774|ENSRNOG00000005074 ## ENSRNOG00000005074|protein_coding|LOC499798|ADP-ribosylation factor-like protein 6-interacting protein 6 (ARL-6- interacting protein 6) (Aip-6). [Source:UniProtKB/Swiss-Prot;Acc:Q68FV2] ## {SimpF: oe = 0.95 1 CpG} |
block2150509 [novel_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.71/0.73 | 22/24/1.00 | 3.5 | 2.5 | 2 | 0 | 2 | 0 | 17 | 4 | 5arm | 1 | 10 | 0.08 | 1 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------GUGUGAC------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------CCCUGGG------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S2 | |||
| ------------------------CCCCTGGGGTCCAGGCAGCATC---------------------------------------------------------------------- | 22 | 1 | - | |
| -----------------CGTGTGACCCCTGGGGTCCAGGCA--------------------------------------------------------------------------- | 24 | - | 1 | |
| rat | gggaaccggtgagtgtgCGTGTGACCCCTGGGGTCCAGGCAGCATCcttatgtgtgctgactatgcctgcctggtctccaggctgcggagtctgccgtttgcactcacccacctca | |||
| ******************************************************************************************************************** | ||||
| >>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000045280 ENSRNOG00000032574 RGD1565055_predicted | |||
| >>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000052080 ENSRNOG00000032574 RGD1565055_predicted | |||
| >>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000047338 ENSRNOG00000032574 RGD1565055_predicted | |||
| rat | (((....((((((((((((.(((((((((((((.(((((((((((..(((.......)))..)))).))))))).)))))).....)).))).)))))..)))))))))...))). | 0.650 -53.10 | ||
| rat | chromosome:7:114095786:114095901:-1 | Same_strand|Intronic_coding|ENSRNOT00000045280|ENSRNOG00000032574 ## ENSRNOG00000032574|protein_coding|RGD1565055_predicted| |
block2460535 [novel_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.53/0.72 | 18/24/0.71 | 3.3 0.8 | 1.7 2.0 | 3 4 | 0 0 | 1 4 | 0 0 | 8 20 | 20 11 | 5arm 5arm | 1 1 | nd nd | 0.27 0.17 | 2 2 | 7 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------GCAAGUU------------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ---------------------GGAGCAA------------------------------------------------------------------------------------------ | 2 | novel | |||
| seed | ---------GGCCUGC------------------------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ----------------------GAGCAAG----------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------AGCAAGG---------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S2 | |||
| -------------TGCAAGTTGGAGCAAGGAG-------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | |
| --------------------TGGAGCAAGGAGGTGCGGGTG----------------------------------------------------------------------------- | 21 | - | 1 | - | - | |
| ----------------------GAGCAAGGAGGTGCGGGTGCCA-------------------------------------------------------------------------- | 22 | 1 | - | - | - | |
| -------------TGCAAGTTGGAGCAAGGAGGTG----------------------------------------------------------------------------------- | 22 | - | - | 1 | - | |
| --------------------TGGAGCAAGGAGGTGCGGGTGCCA-------------------------------------------------------------------------- | 24 | - | - | - | 1 | |
| ---------------------GGAGCAAGGAGGTGCGGG------------------------------------------------------------------------------- | 18 | - | - | 1 | - | |
| --------GGGCCTGCAAGTTGGAGCAAGGA--------------------------------------------------------------------------------------- | 23 | - | - | 1 | - | |
| rat | tgcaagtcGGGCCTGCAAGTTGGAGCAAGGAGGTGCGGGTGCCAaaaggctcagactctccgaagctggtgggcacttgctcacacccatgctttggctggcaccccagacctgacaa | |||||
| ********************************************************************************************************************** | ||||||
| rat | ((((.((((((..(((.(((..(((((.((..(((((((((((....(((((.((...)).)).)))....)))))))))..))..)).)))))..))).))).))).))).)).)). | 1.000 -52.00 | ||||
| rat | chromosome:8:123868388:123868505:1 | intergenic ## {SimpF: oe = 0.85 1 CpG} |
block2153139 [novel_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.39/0.45 | 19/23/0.80 | 0.0 2.0 | 1.0 0.7 | 2 3 | 0 0 | 1 1 | 0 0 | 6 13 | 13 3 | 5arm 5arm | 2 2 | nd nd | 0.43 0.15 | 9 1 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------UCCAGGU---------------------------------------------------------------------------------- | 2 | novel |
| seed | ----------------AUAACAC------------------------------------------------------------------------- | 1 | novel |
| seed | ------------------AACACAG----------------------------------------------------------------------- | 1 | novel |
| seed | --------------AGAUAAC--------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------TTCCAGGTAGATAACACAG----------------------------------------------------------------------- | 19 | 1 | |
| ------TTCCAGGTAGATAACACAGAG--------------------------------------------------------------------- | 21 | 1 | |
| -------------TAGATAACACAGAGGTATGGACT------------------------------------------------------------ | 23 | 1 | |
| -----------------TAACACAGAGGTATGGACTA----------------------------------------------------------- | 20 | 1 | |
| ---------------GATAACACAGAGGTATGGAC------------------------------------------------------------- | 20 | 1 | |
| rat | gaggcaTTCCAGGTAGATAACACAGAGGTATGGACTAgagaaacagtgggacaagttctggcccaaggcctctgtgtccaaggaagggaggcctta | ||
| ************************************************************************************************ | |||
| rat | (((((.((((.........((((((((((.(((.((((((...............)))))).)))..)))))))))).........))))))))). | 0.900 -36.63 |
| rat | chromosome:7:116616590:116616685:-1 | intergenic |
block1094250 [novel_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.45/0.58 | 20/24/1.00 | 2.0 0.0 | 0.0 0.0 | 2 3 | 0 0 | 2 2 | 0 0 | 10 20 | 14 8 | 5arm 5arm | 1 1 | nd nd | 0.15 0.30 | 1 4 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------GUCUCCU------------------------------------------------------------------------ | 3 | novel | ||
| seed | -----------CCCUGCA---------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------GCAGCUG------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T5S1 | T5S2 | |||
| --------------------TGTCTCCTCTCAGATTCTCA------------------------------------------------------------ | 20 | - | 2 | 1 | |
| --------------TGCAGCTGTCTCCTCTCAGA------------------------------------------------------------------ | 20 | 1 | - | - | |
| ----------ACCCTGCAGCTGTCTCCTCTCAGA------------------------------------------------------------------ | 24 | - | 1 | - | |
| rat | tgtcgtgtgcACCCTGCAGCTGTCTCCTCTCAGATTCTCAttgaacagtttcttctgtgactgcctctcagaggaggctccacatgctgctaccacggcc | ||||
| **************************************************************************************************** | |||||
| rat | .((((((........(((((.(((((((((.(((....((....((((......))))...))..))).))))))))).......)))))...)))))). | 0.590 -33.30 | |||
| rat | chromosome:20:5564777:5564876:1 | intergenic |
block1499770 [novel_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.41/0.45 | 22/24/1.00 | 3.0 | 3.7 | 3 | 0 | 3 | 0 | 10 | 8 | 5arm | 2 | nd | 0.18 | 2 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------CAUGCAU------------------------------------------------------------------------------ | 1 | novel | ||
| seed | -----------------GCAUUGA--------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------GAUCAUG--------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------------TGCATTGAACCTAGTGGACAAACT----------------------------------------------------------- | 24 | - | - | 1 | |
| -------------TCATGCATTGAACCTAGTGGAC---------------------------------------------------------------- | 22 | - | 1 | - | |
| ----------TGATCATGCATTGAACCTAGTG------------------------------------------------------------------- | 22 | 1 | - | - | |
| rat | ccacgtgtgcTGATCATGCATTGAACCTAGTGGACAAACTgatggcagtttctgtaaattggatgtctcttcttgtttaagcatgttagggtgtgtggc | ||||
| *************************************************************************************************** | |||||
| rat | ((((..((.((((.(((((.((((((..((.(((((..(((((.((((...))))..))))).)))))...)).))))))))))))))).))..)))). | 0.850 -29.40 | |||
| rat | chromosome:3:141754198:141754296:1 | intergenic |
block1499821 [novel_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.41/0.45 | 22/24/1.00 | 3.0 | 3.7 | 3 | 0 | 3 | 0 | 10 | 8 | 5arm | 2 | nd | 0.18 | 2 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------CAUGCAU------------------------------------------------------------------------------ | 1 | novel | ||
| seed | -----------------GCAUUGA--------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------GAUCAUG--------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------------TGCATTGAACCTAGTGGACAAACT----------------------------------------------------------- | 24 | - | - | 1 | |
| -------------TCATGCATTGAACCTAGTGGAC---------------------------------------------------------------- | 22 | - | 1 | - | |
| ----------TGATCATGCATTGAACCTAGTG------------------------------------------------------------------- | 22 | 1 | - | - | |
| rat | ccacgtgtgcTGATCATGCATTGAACCTAGTGGACAAACTgatggcagtttctgtaaattggatgtctcttcttgtttaagcatgttagggtgtgtggc | ||||
| *************************************************************************************************** | |||||
| rat | ((((..((.((((.(((((.((((((..((.(((((..(((((.((((...))))..))))).)))))...)).))))))))))))))).))..)))). | 0.850 -29.40 | |||
| rat | chromosome:3:141756006:141756104:1 | intergenic |
block1773152 [novel_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.35/0.36 | 20/22/1.00 | 1.5 | 2.5 | 2 | 0 | 2 | 0 | 7 | 20 | 3arm | 4 | nd | 0.30 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------------CAUGAAA--------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------------------AUCCAUG------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ----------------------------------------------------------------------------------CCATGAAACTACATTCAATTCC------- | 22 | - | 1 | |
| -------------------------------------------------------------------------------CATCCATGAAACTACATTCA------------ | 20 | 1 | - | |
| rat | tcatgactattggcaatgagtggttttgataccccaaggttcttttccagctttccttcctgggtatggaatcctgtggCATCCATGAAACTACATTCAATTCCatcatga | |||
| *************************************************************************************************************** | ||||
| rat | ((((((....(((...((((((((((((((.((.((.((((((..(((((.........)))))...)))))).)).)).)))...))))))))..)))...))))))))) | 0.990 -31.30 | ||
| rat | chromosome:5:126882088:126882198:-1 | intergenic |
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