other hairpins
novel_5varHIGH_randfoldOK (8 loci)
novel_Multihit_5varHIGH_bulgeHIGH (8 loci)
block964438 [novel_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.441 | no | no | 0.57/0.61 | 23/23/1.00 | 2.5 | 2.5 | 2 | 0 | 1 | 0 | 12 | 12 | 3arm | 18 | nd | 0.30 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------UAGCCAG-------------------------------- | 1 | novel |
| seed | ----------------------------------------------------------------------AGCCACU--------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------------------------------------TTAGCCAGCCACTGATGGGGACA----------------- | 23 | 1 | |
| ---------------------------------------------------------------------CAGCCACTGATGGGGACAGACTC------------ | 23 | 1 | |
| rat | ttgagcacaggaacactgcttcatttggatattcctaatttcttggaccctcccttgaatcctcTTAGCCAGCCACTGATGGGGACAGACTCgccctctcctca | ||
| ******************************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||
| rat | .((((...(((....(((((((((((((......((((.(((..((......))..))).....))))....)))..))))))).)))......)))...)))) | 0.410 -19.80 |
| rat | chromosome:1:52237735:52237838:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block911006 [novel_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.694 | no | no | 0.27/0.35 | 20/22/1.00 | 1.5 | 2.5 | 2 | 0 | 2 | 0 | 16 | 15 | 5arm | 12 | nd | 0.30 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------GAUAGAU--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------GAAGAUA------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ----------------GGAAGATAGATTTATGACCT------------------------------------------------------------------------------ | 20 | 1 | - | |
| -------------------AGATAGATTTATGACCTTAGTT------------------------------------------------------------------------- | 22 | - | 1 | |
| rat | gcaggtgagacgcttgGGAAGATAGATTTATGACCTTAGTTagggacttggccatatacctatgggaagacactcagcataagaaactacatcttttcttctagcaactgtgca | |||
| ****************************************************************************************************************** | ||||
| rat | ((((((.....(((..((((((.((((.((....(((((((.((..(((..(((((....))))).)))...)).))).))))....)).))))..))))))))).))).))). | 0.540 -23.20 | ||
| rat | chromosome:1:202990984:202991097:-1 | intergenic |
block911098 [novel_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.617 | no | no | 0.27/0.35 | 20/22/1.00 | 1.5 | 2.5 | 2 | 0 | 2 | 0 | 16 | 15 | 5arm | 12 | nd | 0.30 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------GAUAGAU--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------GAAGAUA------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ----------------GGAAGATAGATTTATGACCT------------------------------------------------------------------------------ | 20 | 1 | - | |
| -------------------AGATAGATTTATGACCTTAGTT------------------------------------------------------------------------- | 22 | - | 1 | |
| rat | gcaggtgagaagcttgGGAAGATAGATTTATGACCTTAGTTagggacttggccatatacctatgggaagacactcagcataagaaactacatcttttcttctagcaactgtgca | |||
| ****************************************************************************************************************** | ||||
| rat | ((((((.....(((..((((((.((((.((....(((((((.((..(((..(((((....))))).)))...)).))).))))....)).))))..))))))))).))).))). | 0.680 -23.20 | ||
| rat | chromosome:1:203009784:203009897:-1 | intergenic |
block911127 [novel_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.617 | no | no | 0.27/0.35 | 20/22/1.00 | 1.5 | 2.5 | 2 | 0 | 2 | 0 | 16 | 15 | 5arm | 12 | nd | 0.30 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------GAUAGAU--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------GAAGAUA------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ----------------GGAAGATAGATTTATGACCT------------------------------------------------------------------------------ | 20 | 1 | - | |
| -------------------AGATAGATTTATGACCTTAGTT------------------------------------------------------------------------- | 22 | - | 1 | |
| rat | gcaggtgagaagcttgGGAAGATAGATTTATGACCTTAGTTagggacttggccatatacctatgggaagacactcagcataagaaactacatcttttcttctagcaactgtgca | |||
| ****************************************************************************************************************** | ||||
| rat | ((((((.....(((..((((((.((((.((....(((((((.((..(((..(((((....))))).)))...)).))).))))....)).))))..))))))))).))).))). | 0.680 -23.20 | ||
| rat | chromosome:1:203013638:203013751:-1 | intergenic |
block911162 [novel_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.694 | no | no | 0.27/0.35 | 20/22/1.00 | 1.5 | 2.5 | 2 | 0 | 2 | 0 | 16 | 15 | 5arm | 12 | nd | 0.30 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------GAUAGAU--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------GAAGAUA------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ----------------GGAAGATAGATTTATGACCT------------------------------------------------------------------------------ | 20 | 1 | - | |
| -------------------AGATAGATTTATGACCTTAGTT------------------------------------------------------------------------- | 22 | - | 1 | |
| rat | gcaggtgagacgcttgGGAAGATAGATTTATGACCTTAGTTagggacttggccatatacctatgggaagacactcagcataagaaactacatcttttcttctagcaactgtgca | |||
| ****************************************************************************************************************** | ||||
| rat | ((((((.....(((..((((((.((((.((....(((((((.((..(((..(((((....))))).)))...)).))).))))....)).))))..))))))))).))).))). | 0.540 -23.20 | ||
| rat | chromosome:1:203017516:203017629:-1 | intergenic |
block911196 [novel_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.694 | no | no | 0.27/0.35 | 20/22/1.00 | 1.5 | 2.5 | 2 | 0 | 2 | 0 | 16 | 15 | 5arm | 12 | nd | 0.30 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------GAUAGAU--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------GAAGAUA------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ----------------GGAAGATAGATTTATGACCT------------------------------------------------------------------------------ | 20 | 1 | - | |
| -------------------AGATAGATTTATGACCTTAGTT------------------------------------------------------------------------- | 22 | - | 1 | |
| rat | gcaggtgagacgcttgGGAAGATAGATTTATGACCTTAGTTagggacttggccatatacctatgggaagacactcagcataagaaactacatcttttcttctagcaactgtgca | |||
| ****************************************************************************************************************** | ||||
| rat | ((((((.....(((..((((((.((((.((....(((((((.((..(((..(((((....))))).)))...)).))).))))....)).))))..))))))))).))).))). | 0.540 -23.20 | ||
| rat | chromosome:1:203021360:203021473:-1 | intergenic |
block911229 [novel_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.694 | no | no | 0.27/0.35 | 20/22/1.00 | 1.5 | 2.5 | 2 | 0 | 2 | 0 | 16 | 15 | 5arm | 12 | nd | 0.30 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------GAUAGAU--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------GAAGAUA------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ----------------GGAAGATAGATTTATGACCT------------------------------------------------------------------------------ | 20 | 1 | - | |
| -------------------AGATAGATTTATGACCTTAGTT------------------------------------------------------------------------- | 22 | - | 1 | |
| rat | gcaggtgagacgcttgGGAAGATAGATTTATGACCTTAGTTagggacttggccatatacctatgggaagacactcagcataagaaactacatcttttcttctagcaactgtgca | |||
| ****************************************************************************************************************** | ||||
| rat | ((((((.....(((..((((((.((((.((....(((((((.((..(((..(((((....))))).)))...)).))).))))....)).))))..))))))))).))).))). | 0.540 -23.20 | ||
| rat | chromosome:1:203025225:203025338:-1 | intergenic |
block911264 [novel_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.617 | no | no | 0.27/0.35 | 20/22/1.00 | 1.5 | 2.5 | 2 | 0 | 2 | 0 | 16 | 15 | 5arm | 12 | nd | 0.30 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------GAUAGAU--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------GAAGAUA------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ----------------GGAAGATAGATTTATGACCT------------------------------------------------------------------------------ | 20 | 1 | - | |
| -------------------AGATAGATTTATGACCTTAGTT------------------------------------------------------------------------- | 22 | - | 1 | |
| rat | gcaggtgagaagcttgGGAAGATAGATTTATGACCTTAGTTagggacttggccatatacctatgggaagacactcagcataagaaactacatcttttcttctagcaactgtgca | |||
| ****************************************************************************************************************** | ||||
| rat | ((((((.....(((..((((((.((((.((....(((((((.((..(((..(((((....))))).)))...)).))).))))....)).))))..))))))))).))).))). | 0.680 -23.20 | ||
| rat | chromosome:1:203029080:203029193:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap (8 loci)
sblock1370 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.593 | no | no | 0.35/0.50 | 19/24/0.95 | 4.0 1.5 0.0 | 1.9 3.5 0.0 | 9 2 6 | 0 0 0 | 3 1 3 | 0 0 0 | 1 15 10 | -1 -1 11 | 5arm_loop 3arm 3arm | 39 46 46 | nd nd nd | 0.18 0.25 0.65 | 2 3 11 | 19 | 5 | 6 | 0 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------AAAUCAG---------------------- | 8 | novel | ||||
| seed | ----GUCUAUG----------------------------------------------------------------- | 3 | novel | ||||
| seed | --GUGUCUA------------------------------------------------------------------- | 3 | novel | ||||
| seed | -------------GUGUUCA-------------------------------------------------------- | 2 | miR-124* | ||||
| seed | -----------------------------------AGUCCUA---------------------------------- | 1 | novel | ||||
| seed | ----------GUUGUGU----------------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------CCUAGAG------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------GAAATCAGCAAGGGTAGAGA---------- | 20 | - | 1 | - | 6 | - | |
| -TGTGTCTATGTTGTGTTCACTTCT--------------------------------------------------- | 24 | - | - | - | 3 | - | |
| ---TGTCTATGTTGTGTTCACTTCT--------------------------------------------------- | 22 | - | - | - | 3 | - | |
| ----------------------------------TAGTCCTAGAGGGAAATCAG---------------------- | 20 | - | - | - | 1 | - | |
| -------------------------------------TCCTAGAGGGAAATCAGCAAGGGT--------------- | 24 | - | - | - | 1 | - | |
| ---------TGTTGTGTTCACTTCTATTC----------------------------------------------- | 20 | - | - | - | - | 1 | |
| ------------TGTGTTCACTTCTATTCCTA-------------------------------------------- | 20 | - | - | - | 1 | - | |
| ----------------------------------------------GAAATCAGCAAGGGTAGAGAAT-------- | 22 | 1 | - | - | - | - | |
| ------------TGTGTTCACTTCTATTCCT--------------------------------------------- | 19 | - | - | 1 | - | - | |
| rat | aTGTGTCTATGTTGTGTTCACTTCTattcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAatgggaccgt | ||||||
| **************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049496 ENSRNOG00000031160 LOC685793 | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042408 ENSRNOG00000031160 LOC685793 | ||||||
| -------------------------------------------------------------------------------------- | ENSRNOT00000059958 ENSRNOG00000030545 LOC685793 | ||||||
| -------------------------------------------------------------------------------------- | ENSRNOT00000049483 ENSRNOG00000030545 LOC685793 | ||||||
| -------------------------------------------------------------------------------------- | ENSRNOT00000039913 ENSRNOG00000030545 LOC685793 | ||||||
| rat | (((.((((.(((((..(((.((((((...((....))...)))))))))..))))).............))))))) | 0.610 -13.54 | |||||
| rat | chromosome:1:50083086:50083161:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000039913|ENSRNOG00000030545 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059959|ENSRNOG00000030545 ## Same_strand|Boundary_non-coding|ENSRNOT00000050327|ENSRNOG00000031160 ## Same_strand|Intronic_non-coding|ENSRNOT00000042408|ENSRNOG00000031160 ## Opposite_strand|Intronic_coding|ENSRNOT00000059958|ENSRNOG00000030545 ## ENSRNOG00000030545|protein_coding|LOC685793| ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock1512 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.688 | no | no | 0.36/0.50 | 20/24/1.00 | 1.0 1.5 0.0 | 0.0 3.5 0.0 | 6 2 6 | 0 0 0 | 1 1 3 | 0 0 0 | 10 43 27 | 15 -21 1 | 5arm 5arm_loop_3arm 3arm | 25 46 46 | nd nd nd | 0.18 0.62 0.55 | 2 8 8 | 16 | 3 | -17 | -21 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------AAAUCAG--------------------------------------- | 8 | novel | ||
| seed | -------------GUCUAUG---------------------------------------------------------------------------------- | 3 | novel | ||
| seed | -----------GUGUCUA------------------------------------------------------------------------------------ | 3 | novel | ||
| seed | -----------------------------------------------CCUAGAG------------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------------AGUCCUA--------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGA--------------------------- | 20 | - | 1 | 6 | |
| ----------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 24 | - | - | 3 | |
| ------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 22 | - | - | 3 | |
| ----------------------------------------------TCCTAGAGGGAAATCAGCAAGGGT-------------------------------- | 24 | - | - | 1 | |
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGAAT------------------------- | 22 | 1 | - | - | |
| -------------------------------------------TAGTCCTAGAGGGAAATCAG--------------------------------------- | 20 | - | - | 1 | |
| rat | aggagaacaaTGTGTCTATGTTGTGTTCACTTCTgttcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAatgggaccgtaactggacaaagctgct | ||||
| ****************************************************************************************************** | |||||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040973 ENSRNOG00000033340 RGD1561446_predicted | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046337 ENSRNOG00000033340 RGD1561446_predicted | ||||
| rat | ((.((.......((((((.(((((((((..((((..((((......(((.....)))........))))...))))..)))).)))))))))))...)).)) | 0.670 -20.54 | |||
| rat | chromosome:1:51651970:51652071:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Same_strand|Boundary_non-coding|ENSRNOT00000048434|ENSRNOG00000033340 ## Same_strand|Intronic_non-coding|ENSRNOT00000046337|ENSRNOG00000033340 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## ENSRNOG00000033340|protein_coding|RGD1561446_predicted| |
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