other hairpins
novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap (8 loci)
sblock392 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.157 | no | no | 0.35/0.45 | 19/24/0.94 | 4.0 0.0 | 1.9 0.0 | 9 6 | 0 0 | 3 2 | 0 0 | 1 11 | -1 11 | 5arm_loop 3arm | 39 39 | nd nd | 0.18 0.65 | 2 11 | 16 | 4 | 6 | 0 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------AAAUCAG----------------------- | 7 | novel | |||
| seed | ----GUCUAUG------------------------------------------------------------------ | 3 | novel | |||
| seed | --GUGUCUA-------------------------------------------------------------------- | 3 | novel | |||
| seed | -------------GUGUUCA--------------------------------------------------------- | 2 | miR-124* | |||
| seed | ----------GUUGUGU------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------GAAATCAGCAAGGGTAGAGA----------- | 20 | 1 | - | 6 | - | |
| -TGTGTCTATGTTGTGTTCACTTCT---------------------------------------------------- | 24 | - | - | 3 | - | |
| ---TGTCTATGTTGTGTTCACTTCT---------------------------------------------------- | 22 | - | - | 3 | - | |
| ---------TGTTGTGTTCACTTCTATTC------------------------------------------------ | 20 | - | - | - | 1 | |
| ------------TGTGTTCACTTCTATTCCTA--------------------------------------------- | 20 | - | - | 1 | - | |
| ------------TGTGTTCACTTCTATTCCT---------------------------------------------- | 19 | - | 1 | - | - | |
| rat | aTGTGTCTATGTTGTGTTCACTTCTattcctatttagtcgtagaggGAAATCAGCAAGGGTAGAGAaggggaccgta | |||||
| ***************************************************************************** | ||||||
| rat | (((.((((.(((((..(((.(((((((..((....))..))))))))))..))))).............))))))). | 0.740 -17.44 | ||||
| rat | chromosome:1:50855093:50855169:-1 | intergenic |
sblock470 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.688 | no | no | 0.36/0.50 | 20/24/1.00 | 1.0 1.5 0.0 | 0.0 3.5 0.0 | 6 2 6 | 0 0 0 | 1 1 3 | 0 0 0 | 10 43 27 | 15 -21 1 | 5arm 5arm_loop_3arm 3arm | 25 46 46 | nd nd nd | 0.18 0.62 0.55 | 2 8 8 | 16 | 3 | -17 | -21 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------AAAUCAG--------------------------------------- | 8 | novel | ||
| seed | -------------GUCUAUG---------------------------------------------------------------------------------- | 3 | novel | ||
| seed | -----------GUGUCUA------------------------------------------------------------------------------------ | 3 | novel | ||
| seed | -----------------------------------------------CCUAGAG------------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------------AGUCCUA--------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGA--------------------------- | 20 | - | 1 | 6 | |
| ----------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 24 | - | - | 3 | |
| ------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 22 | - | - | 3 | |
| ----------------------------------------------TCCTAGAGGGAAATCAGCAAGGGT-------------------------------- | 24 | - | - | 1 | |
| -------------------------------------------------------GAAATCAGCAAGGGTAGAGAAT------------------------- | 22 | 1 | - | - | |
| -------------------------------------------TAGTCCTAGAGGGAAATCAG--------------------------------------- | 20 | - | - | 1 | |
| rat | aggagaacaaTGTGTCTATGTTGTGTTCACTTCTgttcctatttagtcctagaggGAAATCAGCAAGGGTAGAGAatgggaccgtaactggacaaagctgct | ||||
| ****************************************************************************************************** | |||||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000041486 ENSRNOG00000033456 LOC308198 | ||||
| rat | ((.((.......((((((.(((((((((..((((..((((......(((.....)))........))))...))))..)))).)))))))))))...)).)) | 0.670 -20.54 | |||
| rat | chromosome:1:52395449:52395550:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000044415|ENSRNOG00000033456 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041486|ENSRNOG00000033456 ## ENSRNOG00000033456|protein_coding|LOC308198| |
sblock10597 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.812 | no | no | 0.38/0.61 | 19/25/0.73 | 0.0 4.4 | 0.0 3.9 | 1 10 | 0 0 | 1 2 | 0 0 | 4 15 | 3 -17 | 5arm 3arm | 4 16 | nd nd | 0.29 0.30 | 2 4 | 11 | 2 | 0 | 3 |
| reads | miRBase family seed | |||
| seed | ------------------------GGAGCAC------------------------------------- | 3 | novel | |
| seed | ------------------------------CACUCAG------------------------------- | 3 | novel | |
| seed | -----GUUCAAG-------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------CAGUAUU--------------------------- | 1 | novel | |
| seed | -----------------------------ACACUCA-------------------------------- | 1 | novel | |
| seed | ----------------CCCCUGC--------------------------------------------- | 1 | novel | |
| seed | ---------------------GCUGGAG---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------TGGAGCACACTCAGTATTTACA----------------------- | 22 | - | 3 | |
| -----------------------------ACACTCAGTATTTACATGGAC------------------ | 21 | - | 2 | |
| -----------------------------ACACTCAGTATTTACATGGACCC---------------- | 23 | - | 1 | |
| --------------------TGCTGGAGCACACTCAGTATTTACA----------------------- | 25 | - | 1 | |
| ----------------------------CACACTCAGTATTTACATGGACCCC--------------- | 25 | 1 | - | |
| ---------------------------------TCAGTATTTACATGGACCC---------------- | 19 | - | 1 | |
| ---------------TCCCCTGCTGGAGCACACTCAGT------------------------------ | 23 | - | 1 | |
| ----GGTTCAAGAAGTCCCCTGCTG------------------------------------------- | 21 | - | 1 | |
| rat | tattGGTTCAAGAAGTCCCCTGCTGGAGCACACTCAGTATTTACATGGACCCCctttgtcattagtag | |||
| ******************************************************************** | ||||
| rat | (((((((.((((..((((..((((.(((....))))))).......))))....))))..))))))). | 0.860 -10.10 | ||
| rat | chromosome:7:17109120:17109187:-1 | intergenic |
sblock10629 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.812 | no | no | 0.38/0.61 | 19/25/0.73 | 0.0 4.4 | 0.0 3.9 | 1 10 | 0 0 | 1 2 | 0 0 | 4 15 | 3 -17 | 5arm 3arm | 4 16 | nd nd | 0.29 0.30 | 2 4 | 11 | 2 | 0 | 3 |
| reads | miRBase family seed | |||
| seed | ------------------------GGAGCAC------------------------------------- | 3 | novel | |
| seed | ------------------------------CACUCAG------------------------------- | 3 | novel | |
| seed | -----GUUCAAG-------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------CAGUAUU--------------------------- | 1 | novel | |
| seed | -----------------------------ACACUCA-------------------------------- | 1 | novel | |
| seed | ----------------CCCCUGC--------------------------------------------- | 1 | novel | |
| seed | ---------------------GCUGGAG---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------TGGAGCACACTCAGTATTTACA----------------------- | 22 | - | 3 | |
| -----------------------------ACACTCAGTATTTACATGGAC------------------ | 21 | - | 2 | |
| -----------------------------ACACTCAGTATTTACATGGACCC---------------- | 23 | - | 1 | |
| --------------------TGCTGGAGCACACTCAGTATTTACA----------------------- | 25 | - | 1 | |
| ----------------------------CACACTCAGTATTTACATGGACCCC--------------- | 25 | 1 | - | |
| ---------------------------------TCAGTATTTACATGGACCC---------------- | 19 | - | 1 | |
| ---------------TCCCCTGCTGGAGCACACTCAGT------------------------------ | 23 | - | 1 | |
| ----GGTTCAAGAAGTCCCCTGCTG------------------------------------------- | 21 | - | 1 | |
| rat | tattGGTTCAAGAAGTCCCCTGCTGGAGCACACTCAGTATTTACATGGACCCCctttgtcattagtag | |||
| ******************************************************************** | ||||
| rat | (((((((.((((..((((..((((.(((....))))))).......))))....))))..))))))). | 0.860 -10.10 | ||
| rat | chromosome:7:17361937:17362004:-1 | intergenic |
sblock10706 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.812 | no | no | 0.38/0.61 | 19/25/0.73 | 0.0 4.4 | 0.0 3.9 | 1 10 | 0 0 | 1 2 | 0 0 | 4 15 | 3 -17 | 5arm 3arm | 4 16 | nd nd | 0.29 0.30 | 2 4 | 11 | 2 | 0 | 3 |
| reads | miRBase family seed | |||
| seed | ------------------------GGAGCAC------------------------------------- | 3 | novel | |
| seed | ------------------------------CACUCAG------------------------------- | 3 | novel | |
| seed | -----GUUCAAG-------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------CAGUAUU--------------------------- | 1 | novel | |
| seed | -----------------------------ACACUCA-------------------------------- | 1 | novel | |
| seed | ----------------CCCCUGC--------------------------------------------- | 1 | novel | |
| seed | ---------------------GCUGGAG---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------TGGAGCACACTCAGTATTTACA----------------------- | 22 | - | 3 | |
| -----------------------------ACACTCAGTATTTACATGGAC------------------ | 21 | - | 2 | |
| -----------------------------ACACTCAGTATTTACATGGACCC---------------- | 23 | - | 1 | |
| --------------------TGCTGGAGCACACTCAGTATTTACA----------------------- | 25 | - | 1 | |
| ----------------------------CACACTCAGTATTTACATGGACCCC--------------- | 25 | 1 | - | |
| ---------------------------------TCAGTATTTACATGGACCC---------------- | 19 | - | 1 | |
| ---------------TCCCCTGCTGGAGCACACTCAGT------------------------------ | 23 | - | 1 | |
| ----GGTTCAAGAAGTCCCCTGCTG------------------------------------------- | 21 | - | 1 | |
| rat | tattGGTTCAAGAAGTCCCCTGCTGGAGCACACTCAGTATTTACATGGACCCCctttgtcattagtag | |||
| ******************************************************************** | ||||
| rat | (((((((.((((..((((..((((.(((....))))))).......))))....))))..))))))). | 0.860 -10.10 | ||
| rat | chromosome:7:18802142:18802209:-1 | intergenic |
sblock10749 [novel_cloningOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.812 | no | no | 0.38/0.61 | 19/25/0.73 | 0.0 4.4 | 0.0 3.9 | 1 10 | 0 0 | 1 2 | 0 0 | 4 15 | 3 -17 | 5arm 3arm | 4 16 | nd nd | 0.29 0.30 | 2 4 | 11 | 2 | 0 | 3 |
| reads | miRBase family seed | |||
| seed | ------------------------GGAGCAC------------------------------------- | 3 | novel | |
| seed | ------------------------------CACUCAG------------------------------- | 3 | novel | |
| seed | -----GUUCAAG-------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------CAGUAUU--------------------------- | 1 | novel | |
| seed | -----------------------------ACACUCA-------------------------------- | 1 | novel | |
| seed | ----------------CCCCUGC--------------------------------------------- | 1 | novel | |
| seed | ---------------------GCUGGAG---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------TGGAGCACACTCAGTATTTACA----------------------- | 22 | - | 3 | |
| -----------------------------ACACTCAGTATTTACATGGAC------------------ | 21 | - | 2 | |
| -----------------------------ACACTCAGTATTTACATGGACCC---------------- | 23 | - | 1 | |
| --------------------TGCTGGAGCACACTCAGTATTTACA----------------------- | 25 | - | 1 | |
| ----------------------------CACACTCAGTATTTACATGGACCCC--------------- | 25 | 1 | - | |
| ---------------------------------TCAGTATTTACATGGACCC---------------- | 19 | - | 1 | |
| ---------------TCCCCTGCTGGAGCACACTCAGT------------------------------ | 23 | - | 1 | |
| ----GGTTCAAGAAGTCCCCTGCTG------------------------------------------- | 21 | - | 1 | |
| rat | tattGGTTCAAGAAGTCCCCTGCTGGAGCACACTCAGTATTTACATGGACCCCctttgtcattagtag | |||
| ******************************************************************** | ||||
| rat | (((((((.((((..((((..((((.(((....))))))).......))))....))))..))))))). | 0.860 -10.10 | ||
| rat | chromosome:7:19397124:19397191:-1 | intergenic |
novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH (8 loci)
block770064 [novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.117 | no | no | 0.44/0.62 | 18/22/0.85 | 0.0 1.5 0.0 | 0.4 0.0 0.8 | 19 2 4 | 0 0 0 | 2 1 1 | 0 0 0 | 12 21 29 | -4 -12 -20 | 5arm_loop 5arm_loop_3arm 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.43 0.52 0.53 | 4 7 7 | 26 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------GGGAACC------------------------------------------------ | 20 | novel | |
| seed | ------------------------------GAGAAUA------------------------------- | 4 | novel | |
| seed | -------------------------GAUCUGA------------------------------------ | 1 | novel | |
| seed | ----------------------GGUGAUC--------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------TGGGAACCGTGGTGATCTGAGA---------------------------------- | 22 | 1 | 11 | |
| ------------TGGGAACCGTGGTGATCTGAG----------------------------------- | 21 | - | 8 | |
| -----------------------------TGAGAATAGGGGAACCGGG-------------------- | 19 | - | 2 | |
| -----------------------------TGAGAATAGGGGAACCGGGGC------------------ | 21 | - | 1 | |
| -----------------------------TGAGAATAGGGGAACCGG--------------------- | 18 | - | 1 | |
| ---------------------TGGTGATCTGAGAATAGGGGA-------------------------- | 21 | - | 1 | |
| ------------------------TGATCTGAGAATAGGGGA-------------------------- | 18 | - | 1 | |
| rat | gcacagcaatgcTGGGAACCGTGGTGATCTGAGAataggggaaccggggcgtctgagttgtgaaagtg | |||
| ******************************************************************** | ||||
| rat | .(((..((..(((.(((.((.((((..(((.......)))..)))).))..))).)))..))...))) | 1.000 -19.20 | ||
| rat | chromosome:19:15929135:15929202:-1 | intergenic |
block1094024 [novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.179 | no | no | 0.26/0.48 | 18/24/0.77 | 0.3 0.0 | 0.0 0.0 | 6 9 | 0 0 | 3 6 | 0 0 | 15 25 | -8 -22 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.65 0.58 | 5 5 | 30 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | --------------------------AAACUUU----------------------------- | 15 | novel | ||||||
| seed | ----------------GCAUGGG--------------------------------------- | 6 | novel | ||||||
| seed | ---------------------------------GAUCCAA---------------------- | 3 | novel | ||||||
| seed | -------------CCUGCAU------------------------------------------ | 2 | novel | ||||||
| seed | -----------------CAUGGGG-------------------------------------- | 2 | novel | ||||||
| seed | -----------------------------------UCCAAAU-------------------- | 1 | novel | ||||||
| seed | -----------------------GCUAAAC-------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| -------------------------TAAACTTTGATCCAAATCAGGCTT------------- | 24 | - | - | - | - | - | 9 | 1 | |
| ---------------TGCATGGGGCTAAACTTTGA--------------------------- | 20 | - | 1 | 1 | - | - | 4 | - | |
| -------------------------TAAACTTTGATCCAAATCAG----------------- | 20 | - | - | - | - | 1 | 1 | 1 | |
| ----------------GCATGGGGCTAAACTTTGA--------------------------- | 19 | - | - | - | - | - | 2 | - | |
| ------------TCCTGCATGGGGCTAAACTTTGA--------------------------- | 23 | - | 1 | - | - | - | 1 | - | |
| --------------------------------TGATCCAAATCAGGCTTA------------ | 18 | - | - | - | 1 | - | 1 | - | |
| -------------------------TAAACTTTGATCCAAATCAGGCT-------------- | 23 | - | - | - | - | - | 1 | - | |
| ----------------------------------ATCCAAATCAGGCTTAGGG--------- | 19 | - | 1 | - | - | - | - | - | |
| --------------------------------TGATCCAAATCAGGCTTAG----------- | 19 | 1 | - | - | - | - | - | - | |
| ----------------------GGCTAAACTTTGATCCAAATCAG----------------- | 23 | - | - | - | - | - | 1 | - | |
| -------------------------TAAACTTTGATCCAAATCA------------------ | 19 | - | - | - | - | - | 1 | - | |
| rat | gaagactgctcttccTGCATGGGGCTAAACTTTGATCCAAATCAGGCTTagggccacacttt | ||||||||
| ************************************************************** | |||||||||
| rat | ((((...(((((.((((....((..((.....))..))....))))...)))))....)))) | 0.860 -13.60 | |||||||
| rat | chromosome:20:5556211:5556272:1 | intergenic |
block1094131 [novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.207 | no | no | 0.30/0.59 | 18/25/0.78 | 0.5 0.0 | 0.0 2.5 | 2 13 | 0 0 | 1 6 | 0 0 | 22 39 | 3 -16 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.36 0.52 | 4 11 | 27 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ----------------------------------------AGACUAU------------------------------------------------------------------- | 17 | novel | |||||
| seed | -----------------------------------------GACUAUU------------------------------------------------------------------ | 2 | novel | |||||
| seed | ------------------------------------------ACUAUUG----------------------------------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------------UGAUUAG------------------------------------------------------------ | 1 | novel | |||||
| seed | -------------------------------------CCUAGAC---------------------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------GCUGAAC----------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------CGGCCCU-------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------AUUGAUU-------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------AGCUGAA------------------------------------------------------------------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------TAGACTATTGATTAGATGGA------------------------------------------------------- | 20 | - | - | - | - | 5 | 1 | |
| ---------------------------------------TAGACTATTGATTAGATGGAAGTG--------------------------------------------------- | 24 | - | - | - | - | 3 | - | |
| ---------------------------------------TAGACTATTGATTAGATGGAAGTGG-------------------------------------------------- | 25 | - | - | - | - | 3 | - | |
| ---------------------------------------TAGACTATTGATTAGATGGAAG----------------------------------------------------- | 22 | - | - | 1 | - | 1 | - | |
| ---------------------------------------TAGACTATTGATTAGATGGAAGT---------------------------------------------------- | 23 | - | - | - | - | 2 | - | |
| ---------------------------------------TAGACTATTGATTAGATGG-------------------------------------------------------- | 19 | 1 | - | - | - | - | - | |
| ----------------------------------------AGACTATTGATTAGATGGAAGTGG-------------------------------------------------- | 24 | - | 1 | - | - | - | - | |
| ------------------------------------CCCTAGACTATTGATTAGA----------------------------------------------------------- | 19 | - | - | - | - | 1 | - | |
| -----------------------AGCTGAACCTCGGCCCTAGACT--------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | |
| --------------------------------------------TATTGATTAGATGGAAGTGGTGA----------------------------------------------- | 23 | - | - | - | - | 1 | - | |
| -----------------------------------------GACTATTGATTAGATGGAAG----------------------------------------------------- | 20 | - | - | - | 1 | - | - | |
| ----------------------------------------------TTGATTAGATGGAAGTGGTGA----------------------------------------------- | 21 | - | - | - | - | 1 | - | |
| --------------------------------TCGGCCCTAGACTATTGATTAGA----------------------------------------------------------- | 23 | - | - | - | - | 1 | - | |
| ----------------------TAGCTGAACCTCGGCCCTAGACT--------------------------------------------------------------------- | 23 | - | - | - | - | 1 | - | |
| -----------------------------------------GACTATTGATTAGATGGA------------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| ----------------------------------------AGACTATTGATTAGATGGAAG----------------------------------------------------- | 21 | - | - | - | - | 1 | - | |
| rat | gccatcgaggcggctgggtgggtagctgaacctcggcccTAGACTATTGATTAGATGGAAGTGGtgatctggccgagaaggtgggagagaagacaggcccggtagcccaggggg | |||||||
| ****************************************************************************************************************** | ||||||||
| rat | .((.((..(((.(((((((..((.(((....(((((((....((((((...........)))))).....)))))))..)))..........))..))))))).)))..)))). | 0.930 -39.50 | ||||||
| rat | chromosome:20:5560831:5560944:1 | intergenic |
block1469773 [novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.732 | no | no | 0.30/0.48 | 19/23/0.81 | 0.0 0.0 0.0 0.0 | 0.0 0.0 2.0 0.0 | 4 1 2 6 | 0 0 0 0 | 2 1 2 2 | 0 0 0 0 | 46 26 15 7 | -21 4 11 22 | 5arm_loop_3arm 3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.43 0.32 0.43 0.40 | 5 5 5 4 | 16 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------------------AAGCAUU------------------- | 7 | novel | ||
| seed | -----------------------------------------------GGAGCAG---------------------------------------------- | 6 | novel | ||
| seed | ---------------------------------------------------------------ACGAGUA------------------------------ | 2 | novel | ||
| seed | --------------------------------------------------------GUCCUUU------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -------------------------------------------------------------------------TAAGCATTACTTACACTCTG------- | 20 | 1 | - | 6 | |
| ----------------------------------------------TGGAGCAGATGTCCTTTACGAGT------------------------------- | 23 | - | 1 | 4 | |
| ----------------------------------------------TGGAGCAGATGTCCTTTAC----------------------------------- | 19 | - | - | 1 | |
| --------------------------------------------------------------TACGAGTATCTTAAGCATT------------------- | 19 | - | - | 1 | |
| -------------------------------------------------------TGTCCTTTACGAGTATCTT-------------------------- | 19 | - | - | 1 | |
| --------------------------------------------------------------TACGAGTATCTTAAGCATTACTT--------------- | 23 | - | 1 | - | |
| rat | agggcaatgggcagagggaagagcttacagatggccccaaagactcTGGAGCAGATGTCCTTTACGAGTatctTAAGCATTACTTACACTCTGgattcct | ||||
| **************************************************************************************************** | |||||
| rat | .(((.(((...(((((..(((.(((((.(((((.....((((((((((...)))).))).))).....))))))))))....)))...))))).)))))) | 0.850 -21.40 | |||
| rat | chromosome:3:76954079:76954178:1 | intergenic |
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