other hairpins
novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH (8 loci)
block1487692 [novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.489 | no | no | 0.37/0.47 | 18/23/0.77 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 5 1 18 | 0 0 0 | 2 1 2 | 0 0 0 | 26 34 40 | -5 -9 -17 | 5arm_loop 5arm_loop_3arm 3arm_loop | 1 1 1 | nd nd nd | 0.57 0.63 0.52 | 6 9 9 | 31 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------GCAUCUC---------------------------------------------- | 21 | novel | |
| seed | ---------------------------CCUUGUG------------------------------------------------------------ | 7 | novel | |
| seed | -------------------------------GUGUGUU-------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------GUUCAUG---------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------CUCAUCA------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ----------------------------------------TGCATCTCATCATTGCTAGAC--------------------------------- | 21 | - | 18 | |
| --------------------------TCCTTGTGTGTTCATGCATCTCA--------------------------------------------- | 23 | 1 | 5 | |
| ----------------------------------------TGCATCTCATCATTGCTAG----------------------------------- | 19 | 1 | 2 | |
| --------------------------TCCTTGTGTGTTCATGCA-------------------------------------------------- | 18 | - | 1 | |
| --------------------------------------------TCTCATCATTGCTAGACGG------------------------------- | 19 | - | 1 | |
| ------------------------------TGTGTGTTCATGCATCTCA--------------------------------------------- | 19 | - | 1 | |
| ----------------------------------TGTTCATGCATCTCATCAT----------------------------------------- | 19 | - | 1 | |
| rat | gtttcctgtgactgacaccccacttgtccttgtgtgttcaTGCATCTCATCATTGCTAGACggtaggaaactttacagtgtcatcggggttaat | |||
| ********************************************************************************************** | ||||
| rat | (((..((.(((.((((((........((((....((((...(((.........)))..))))..)))).........))))))))).))..))) | 0.460 -20.13 | ||
| rat | chromosome:3:115214303:115214396:1 | intergenic |
block2247873 [novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.915 | no | no | 0.38/0.44 | 18/25/0.88 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 9 4 | 0 0 0 | 1 1 1 | 0 0 0 | 30 14 8 | -20 -1 6 | 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.52 0.52 0.45 | 7 6 6 | 16 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------AGCCUCU--------------------------- | 10 | novel | |
| seed | -------------------------------------------------ACUCCUA-------------------- | 5 | novel | |
| seed | -------------------------------GUCUUAA-------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------TAGCCTCTACTCCTAAGAAGA-------------- | 21 | - | 9 | |
| ------------------------------------------------TACTCCTAAGAAGATGGACA-------- | 20 | - | 4 | |
| ------------------------------------------------TACTCCTAAGAAGATGGACAT------- | 21 | - | 1 | |
| -----------------------------------------TAGCCTCTACTCCTAAGA----------------- | 18 | - | 1 | |
| ------------------------------AGTCTTAAATCTAGCCTCTACTCCT--------------------- | 25 | 1 | - | |
| rat | cagaaagagtctcctataattggtaaatgtagtcttaaatcTAGCCTCTACTCCTAAGAAGATGGACAtgggtctg | |||
| **************************************************************************** | ||||
| rat | ((((....((.(((.....((((.....((((.((.......))...))))..))))......))).))...)))) | 0.480 -9.70 | ||
| rat | chromosome:7:112750295:112750370:1 | intergenic |
block2551381 [novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.255 | no | no | 0.44/0.53 | 18/24/0.70 | 0.0 0.3 | 0.0 1.2 | 1 10 | 0 0 | 1 7 | 0 0 | 34 46 | 6 -12 | 5arm 5arm_loop_3arm | 3 3 | nd nd | 0.58 0.48 | 7 5 | 27 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -----------------------------------------------UCCCAUG------------------------------------------------------------------ | 12 | novel | |||||||
| seed | ------------------------------------------------CCCAUGU----------------------------------------------------------------- | 9 | novel | |||||||
| seed | ------------------------------------------GCGCUUC----------------------------------------------------------------------- | 4 | novel | |||||||
| seed | -----------------------------------CAACUUU------------------------------------------------------------------------------ | 1 | novel | |||||||
| seed | ----------------------------------------UUGCGCU------------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------TTCCCATGTTCTGTTCTGCAG----------------------------------------------------- | 21 | - | 1 | - | - | - | - | 7 | - | |
| -----------------------------------------------TCCCATGTTCTGTTCTGCAG----------------------------------------------------- | 20 | 1 | - | 1 | - | - | 1 | 2 | 1 | |
| -----------------------------------------------TCCCATGTTCTGTTCTGCAGCTTT------------------------------------------------- | 24 | - | - | - | - | - | - | 3 | - | |
| -----------------------------------------TGCGCTTCCCATGTTCTGT------------------------------------------------------------ | 19 | - | - | - | - | - | - | 2 | - | |
| ----------------------------------------------TTCCCATGTTCTGTTCTGC------------------------------------------------------- | 19 | - | - | - | - | - | - | 2 | - | |
| ----------------------------------------------TTCCCATGTTCTGTTCTG-------------------------------------------------------- | 18 | - | - | - | - | - | - | 2 | - | |
| ---------------------------------------TTTGCGCTTCCCATGTTCT-------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | |
| -----------------------------------------TGCGCTTCCCATGTTCTGTT----------------------------------------------------------- | 20 | - | - | - | 1 | - | - | - | - | |
| ----------------------------------CCAACTTTGCGCTTCCCAT------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | |
| -----------------------------------------TGCGCTTCCCATGTTCTGTTCT--------------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| rat | aacttttcctctccctgaccagctctcttcttggccaactttgcgcTTCCCATGTTCTGTTCTGCAGCTTTgctggtgtgctgcccttctgcttcctgggtcctggagggttccaaggtt | |||||||||
| ************************************************************************************************************************ | ||||||||||
| <<<<<<<<<<<<<<<<<<<--------------------------------------------------------------------------------------------------------------- | ENSRNOT00000047326 ENSRNOG00000037286 LOC367336 | |||||||||
| rat | ((((((..((((((..((((((..........(((.......((((...(((.((.(((.....)))....))))).)))).)))..........)))).))..))))))....)))))) | 0.680 -28.65 | ||||||||
| rat | chromosome:9:105315498:105315617:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000047326|ENSRNOG00000037286 ## ENSRNOG00000037286|protein_coding|LOC367336| |
sblock8192 [novel_cloningOK_multiarm_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.443 | no | no | 0.38/0.50 | 18/24/0.76 | 1.0 0.0 0.0 0.0 | 1.3 0.0 2.5 0.0 | 3 1 6 7 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 20 32 45 20 | 5 -8 -21 3 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.45 0.50 0.54 0.45 | 3 5 6 5 | 17 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------AUCUAGU-------------------------------- | 7 | novel | |
| seed | ----------------------------------------------GGGAAAA------------------------------------------- | 6 | novel | |
| seed | ---------------------CAUACUC-------------------------------------------------------------------- | 2 | novel | |
| seed | ------------------------ACUCUGU----------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------GCCAGAA-------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------TATCTAGTGATGGCATGAAG-------------------- | 20 | - | 7 | |
| ---------------------------------------------TGGGAAAACCATATCTAGTGA------------------------------ | 21 | 1 | 2 | |
| ---------------------------------------------TGGGAAAACCATATCTAG--------------------------------- | 18 | - | 2 | |
| --------------------TCATACTCTGTGTGCCAGA--------------------------------------------------------- | 19 | - | 2 | |
| ---------------------------------------------TGGGAAAACCATATCTAGTGATGG--------------------------- | 24 | - | 1 | |
| -----------------------TACTCTGTGTGCCAGAACAC----------------------------------------------------- | 20 | - | 1 | |
| --------------------------------TGCCAGAACACCTTGGGAAAACCA---------------------------------------- | 24 | - | 1 | |
| rat | agcctgtcaagggaagcccttcatactctgtgtgccagaacaccttgggaaaaccaTATCTAGTGATGGCATGAAGcttgggacctttcgatttgt | |||
| ************************************************************************************************ | ||||
| rat | .((..((((((((...(((........((.(((((((..((....(((.....)))......))..))))))).))...))).))))).)))..)) | 0.850 -23.50 | ||
| rat | chromosome:3:140163429:140163524:1 | intergenic |
novel_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH (8 loci)
block349814 [novel_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.029 | no | no | 0.32/0.48 | 19/23/0.73 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 2 1 8 | 0 0 0 | 1 1 1 | 0 0 0 | 34 23 12 | -16 -4 3 | 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.53 0.53 0.57 | 7 4 5 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------AGGAAAA--------------------------- | 8 | novel | |
| seed | -----------------------------------ACCCAUA---------------------------------------- | 2 | novel | |
| seed | -----------------------------------------AAAGUAU---------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------------------------------TAGGAAAACGCCCAAAGTTCCCA------------ | 23 | - | 8 | |
| ----------------------------------TACCCATAAAGTATAGGAA----------------------------- | 19 | - | 2 | |
| ----------------------------------------TAAAGTATAGGAAAACGCC----------------------- | 19 | 1 | - | |
| rat | ctaaagatggctgccatgaacaataagctctccatacccataaagtaTAGGAAAACGCCCAAAGTTCCCAtagccatatttg | |||
| ********************************************************************************** | ||||
| rat | .((((.(((((((....((((.....((..(((((((.......)))).)))....)).....))))...))))))).)))) | 0.980 -16.70 | ||
| rat | chromosome:14:42006682:42006763:-1 | intergenic |
block1574978 [novel_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.201 | no | no | 0.47/0.67 | 19/22/0.70 | 0.0 0.6 0.0 | 0.0 0.8 0.0 | 1 8 1 | 0 0 0 | 1 2 1 | 0 0 0 | 0 6 18 | 14 3 -6 | 5arm 5arm 5arm_loop_3arm | 2 2 2 | nd nd nd | 0.42 0.33 0.43 | 5 6 5 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------GCUCCUA------------------------------------------------ | 6 | novel | |
| seed | -AGGCUUA-------------------------------------------------------- | 1 | novel | |
| seed | -------AUGCUCC-------------------------------------------------- | 1 | novel | |
| seed | -------------------GCCUGCA-------------------------------------- | 1 | novel | |
| seed | ------------CCUAGUU--------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------TGCTCCTAGTTGCCTGCAGGGA---------------------------------- | 22 | 2 | 3 | |
| ------TATGCTCCTAGTTGCCTGCAG------------------------------------- | 21 | - | 1 | |
| -----------TCCTAGTTGCCTGCAGGGA---------------------------------- | 19 | - | 1 | |
| --------TGCTCCTAGTTGCCTGCAG------------------------------------- | 19 | - | 1 | |
| GAGGCTTATGCTCCTAGTT--------------------------------------------- | 19 | - | 1 | |
| ------------------TGCCTGCAGGGATGCCCAGAG------------------------- | 21 | - | 1 | |
| rat | GAGGCTTATGCTCCTAGTTGCCTGCAGGGATGCCCAGAGctcgtcttgtggagggcatattcct | |||
| **************************************************************** | ||||
| -------------------------------------------------------------------------- | ENSRNOT00000057552 ENSRNOG00000037879 | |||
| rat | .(((..(((((.(((......((((((((..((.....))...))))))))))))))))..))) | 0.810 -20.60 | ||
| rat | chromosome:4:119284804:119284867:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000057552|ENSRNOG00000037879 ## ENSRNOG00000037879|protein_coding|| |
block1575148 [novel_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.201 | no | no | 0.47/0.67 | 19/22/0.70 | 0.0 0.6 0.0 | 0.0 0.8 0.0 | 1 8 1 | 0 0 0 | 1 2 1 | 0 0 0 | 0 6 18 | 14 3 -6 | 5arm 5arm 5arm_loop_3arm | 2 2 2 | nd nd nd | 0.42 0.33 0.43 | 5 6 5 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------GCUCCUA------------------------------------------------ | 6 | novel | |
| seed | -AGGCUUA-------------------------------------------------------- | 1 | novel | |
| seed | -------AUGCUCC-------------------------------------------------- | 1 | novel | |
| seed | -------------------GCCUGCA-------------------------------------- | 1 | novel | |
| seed | ------------CCUAGUU--------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --------TGCTCCTAGTTGCCTGCAGGGA---------------------------------- | 22 | 2 | 3 | |
| ------TATGCTCCTAGTTGCCTGCAG------------------------------------- | 21 | - | 1 | |
| -----------TCCTAGTTGCCTGCAGGGA---------------------------------- | 19 | - | 1 | |
| --------TGCTCCTAGTTGCCTGCAG------------------------------------- | 19 | - | 1 | |
| GAGGCTTATGCTCCTAGTT--------------------------------------------- | 19 | - | 1 | |
| ------------------TGCCTGCAGGGATGCCCAGAG------------------------- | 21 | - | 1 | |
| rat | GAGGCTTATGCTCCTAGTTGCCTGCAGGGATGCCCAGAGctcgtcttgtggagggcatattcct | |||
| **************************************************************** | ||||
| rat | .(((..(((((.(((......((((((((..((.....))...))))))))))))))))..))) | 0.810 -20.60 | ||
| rat | chromosome:4:119336813:119336876:-1 | intergenic |
block2312032 [novel_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.260 | no | no | 0.45/0.53 | 19/24/0.76 | 0.0 0.7 0.0 | 0.0 1.0 0.0 | 4 3 24 | 0 0 0 | 4 1 4 | 0 0 0 | 38 25 15 | -18 1 12 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.47 0.38 0.50 | 4 4 8 | 42 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------GCAAUUG----------------------------- | 29 | novel | |||||
| seed | ---------------------------------------UCCAGUC---------------------------------------------- | 7 | novel | |||||
| seed | ------------------------------------------------------CUGCAAU------------------------------- | 3 | novel | |||||
| seed | -----------------------------------------------CACAGCU-------------------------------------- | 2 | novel | |||||
| seed | ---------------------------------------------CUCACAG---------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T5S1 | |||
| -------------------------------------------------------TGCAATTGTCTCCCGTGTTTGT--------------- | 22 | - | 2 | - | - | - | 24 | |
| --------------------------------------TTCCAGTCTCACAGCTCTG----------------------------------- | 19 | 1 | - | 1 | - | 1 | 4 | |
| ----------------------------------------------TCACAGCTCTGCAATTGTCTC------------------------- | 21 | - | - | - | - | - | 2 | |
| -------------------------------------------------------TGCAATTGTCTCCCGTGTTTG---------------- | 21 | 1 | - | - | - | - | 1 | |
| -----------------------------------------------------TCTGCAATTGTCTCCCGTG-------------------- | 19 | - | - | - | 1 | - | 1 | |
| -------------------------------------------------------TGCAATTGTCTCCCGTGTT------------------ | 19 | - | - | - | - | - | 1 | |
| -----------------------------------------------------TCTGCAATTGTCTCCCGTGTTTGT--------------- | 24 | - | - | - | - | - | 1 | |
| --------------------------------------------TCTCACAGCTCTGCAATTGT---------------------------- | 20 | - | - | - | - | - | 1 | |
| rat | tcggtcgtatctcctgtgttgggagatctgcctggggattccagtctcacagctcTGCAATTGTCTCCCGTGTTTGTatcgtatgtttctgg | |||||||
| ******************************************************************************************** | ||||||||
| rat | .(((.(((((.........((((((((.(((((((((((....))))).)))....)))...))))))))..........)))))...))). | 0.980 -24.91 | ||||||
| rat | chromosome:8:57741339:57741430:-1 | intergenic |
block827973 [novel_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.469 | no | no | 0.50/0.58 | 19/24/0.93 | 0.0 0.0 0.0 | 0.0 0.9 0.0 | 1 10 1 | 0 0 0 | 1 3 1 | 0 0 0 | 12 18 28 | 14 4 -6 | 5arm 5arm 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.45 0.48 0.58 | 4 5 5 | 15 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------GACCACC------------------------------------------------------------------ | 13 | novel | ||
| seed | -----------------------------GCAAUCG-------------------------------------------------------- | 1 | novel | ||
| seed | -------------CACAAUG------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ------------------TGACCACCTCTGCAATCGCTG----------------------------------------------------- | 21 | 1 | 1 | 7 | |
| ------------------TGACCACCTCTGCAATCGCTGGTT-------------------------------------------------- | 24 | - | - | 3 | |
| ------------TCACAATGACCACCTCTGCA------------------------------------------------------------ | 20 | - | - | 1 | |
| ----------------------------TGCAATCGCTGGTTTGGAACCACT---------------------------------------- | 24 | - | - | 1 | |
| ------------------TGACCACCTCTGCAATCGC------------------------------------------------------- | 19 | - | - | 1 | |
| rat | ggttgactagcctcacaaTGACCACCTCTGCAATCGCTGGTTtggaaccacttctcctgcttcaccagagctttcacagtgactgattcccc | ||||
| ******************************************************************************************** | |||||
| ------------------------------------------------------------------------------------------------------ | ENSRNOT00000044049 ENSRNOG00000040148 | ||||
| rat | ((..((.(((..((((..(((....(((((.....((.((...(((.....))).)).)).....)))))...)))..))))))).))..)) | 0.660 -17.00 | |||
| rat | chromosome:1:13905099:13905190:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000044049|ENSRNOG00000040148 ## ENSRNOG00000040148|protein_coding|| |
block1696320 [novel_cloningOK_multiarm_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.936 | no | no | 0.37/0.48 | 19/25/0.80 | 0.0 0.4 | 0.0 0.9 | 2 14 | 0 0 | 1 2 | 0 0 | 49 37 | -20 0 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.36 0.32 | 6 4 | 20 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------UGCAAUU---------------------------------------------------- | 11 | novel | |
| seed | --------------------------------------------------------------GCAAUUG--------------------------------------------------- | 7 | novel | |
| seed | --------------------------------------------------GCAGACA--------------------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------------------------------------TTGCAATTGAGGTTGATGACTG-------------------------------------- | 22 | 1 | 5 | |
| -------------------------------------------------------------TGCAATTGAGGTTGATGACT--------------------------------------- | 20 | - | 4 | |
| ------------------------------------------------------------TTGCAATTGAGGTTGATGAC---------------------------------------- | 20 | - | 3 | |
| -------------------------------------------------CGCAGACACCATTGCAATTGAGGTT---------------------------------------------- | 25 | - | 2 | |
| -------------------------------------------------------------TGCAATTGAGGTTGATGACTGC------------------------------------- | 22 | - | 2 | |
| ------------------------------------------------------------TTGCAATTGAGGTTGATGA----------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------------TTGCAATTGAGGTTGATGACT--------------------------------------- | 21 | - | 1 | |
| -------------------------------------------------------------TGCAATTGAGGTTGATGAC---------------------------------------- | 19 | - | 1 | |
| rat | ccggggggtgggggctatgcgagtcacagaggcaggaacaaacttagggCGCAGACACCATTGCAATTGAGGTTGATGACTGCtgtggaggtaggtgaaaggcaggtgttgtattgcttg | |||
| ************************************************************************************************************************ | ||||
| rat | .((((.((((.(((((.(((...((((...(((((...(((.(((((...((((......))))..))))).)))....)))))..........))))...)))))).)).)))).)))) | 0.640 -27.12 | ||
| rat | chromosome:4:164267428:164267547:1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 31024 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.